Wall clock time and date at job start Mon Mar 30 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47119 * 2 1 4 4 C 1.50697 * 109.47767 * 239.99612 * 2 1 3 5 5 H 1.08002 * 119.99989 * 240.00526 * 4 2 1 6 6 C 1.37877 * 119.99999 * 59.99798 * 4 2 1 7 7 N 1.31519 * 119.99614 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00095 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47487 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47185 * 120.00321 * 8 6 4 11 11 H 1.48502 * 109.47293 * 239.99950 * 8 6 4 12 12 C 1.50702 * 109.47010 * 119.99353 * 2 1 3 13 13 C 1.38250 * 119.97690 * 60.00702 * 12 2 1 14 14 C 1.38357 * 120.02365 * 180.23584 * 13 12 2 15 15 F 1.35102 * 120.00806 * 179.74409 * 14 13 12 16 16 C 1.38688 * 119.98106 * 359.48476 * 14 13 12 17 17 F 1.35103 * 120.02146 * 180.26022 * 16 14 13 18 18 C 1.38355 * 119.95301 * 0.50939 * 16 14 13 19 19 C 1.38423 * 119.97931 * 239.97921 * 12 2 1 20 20 F 1.35092 * 119.99207 * 0.02562 * 19 12 2 21 21 H 1.08991 * 109.47421 * 300.00351 * 1 2 3 22 22 H 1.09000 * 109.46966 * 60.00686 * 1 2 3 23 23 H 1.09005 * 109.46662 * 179.97438 * 1 2 3 24 24 H 0.97004 * 119.99371 * 179.97438 * 7 6 4 25 25 H 1.08002 * 119.98396 * 359.94940 * 13 12 2 26 26 H 1.08000 * 120.00737 * 179.76581 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3217 -1.1205 -4.0077 9 1 3.1459 -2.2879 -3.6035 10 1 1.1664 -1.5869 -4.8160 11 1 3.1469 -0.1876 -4.8163 12 6 2.0323 -0.7103 1.2306 13 6 1.6981 -2.0339 1.4489 14 6 2.1547 -2.6855 2.5808 15 9 1.8237 -3.9775 2.7965 16 6 2.9567 -2.0137 3.4912 17 9 3.4074 -2.6507 4.5941 18 6 3.2908 -0.6891 3.2718 19 6 2.8284 -0.0372 2.1412 20 9 3.1544 1.2562 1.9267 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7097 1.1615 -3.4845 25 1 1.0766 -2.5580 0.7380 26 1 3.9121 -0.1639 3.9821 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260426739.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:15 Heat of formation + Delta-G solvation = -135.867019 kcal Electronic energy + Delta-G solvation = -15700.773587 eV Core-core repulsion = 12522.068594 eV Total energy + Delta-G solvation = -3178.704993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.53512 -49.96032 -49.60890 -39.98306 -36.26666 -33.38300 -31.40253 -29.78105 -27.23860 -25.06062 -23.89329 -21.86681 -19.31255 -19.03248 -18.35493 -17.96906 -17.44216 -16.92356 -16.46101 -16.37456 -16.02101 -15.64590 -15.25176 -15.14584 -14.71699 -13.99185 -13.75788 -13.32155 -13.10710 -12.89373 -12.77938 -12.41258 -12.18623 -12.09175 -11.50271 -11.06500 -10.49925 -10.05008 -9.47627 -8.12510 -6.27207 -0.23205 -0.10814 1.42388 1.45765 1.55809 2.19362 2.44644 2.61942 2.99592 3.16906 3.40521 3.53377 3.75166 4.04548 4.49397 4.66961 4.78506 4.83765 4.95825 5.06967 5.14739 5.20614 5.58072 5.69251 5.84115 6.01608 6.25338 6.80739 7.41557 8.92504 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.031242 B = 0.008387 C = 0.007501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.013560 B = 3337.749144 C = 3732.123919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.069 3.931 3 H 0.017 0.983 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.283 1.283 12 C -0.065 4.065 13 C -0.091 4.091 14 C 0.058 3.942 15 F -0.131 7.131 16 C 0.076 3.924 17 F -0.125 7.125 18 C -0.144 4.144 19 C 0.099 3.901 20 F -0.134 7.134 21 H 0.028 0.972 22 H 0.063 0.937 23 H 0.041 0.959 24 H 0.263 0.737 25 H 0.155 0.845 26 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.489 -4.186 9.647 10.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 H 0.035 0.965 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.191 1.191 10 H -0.204 1.204 11 H -0.209 1.209 12 C -0.066 4.066 13 C -0.110 4.110 14 C 0.037 3.963 15 F -0.110 7.110 16 C 0.056 3.944 17 F -0.104 7.104 18 C -0.163 4.163 19 C 0.079 3.921 20 F -0.113 7.113 21 H 0.047 0.953 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.173 0.827 26 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.425 -4.100 9.563 10.684 hybrid contribution 0.262 -0.264 -0.846 0.924 sum 2.687 -4.364 8.716 10.111 Atomic orbital electron populations 1.21670 0.96342 1.00010 1.00279 1.17765 0.93953 0.94630 0.88628 0.96479 1.21375 1.31696 1.12674 0.90710 0.92333 1.25676 0.95081 0.95582 1.01757 1.70011 1.37228 1.23812 1.24177 0.85549 0.78219 0.78694 0.79486 1.19137 1.20440 1.20884 1.20477 0.95467 0.94262 0.96380 1.20795 1.00731 0.93794 0.95690 1.17661 1.01790 0.80007 0.96811 1.91499 1.91072 1.33654 1.94734 1.17053 1.00369 0.91316 0.85680 1.91520 1.87425 1.81501 1.49918 1.20964 1.03788 0.92867 0.98678 1.17360 0.99535 0.79587 0.95620 1.91483 1.90908 1.34125 1.94754 0.95260 0.91804 0.94031 0.92758 0.82738 0.79855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.78 71.98 0.63 -5.05 15 2 C 0.07 3.27 2.46 -12.29 -0.03 3.24 15 3 H 0.02 0.91 7.12 -2.38 -0.02 0.89 15 4 C -0.53 -27.28 8.24 25.60 0.21 -27.07 15 5 H 0.06 2.98 7.60 -2.91 -0.02 2.96 15 6 C 0.02 0.98 5.30 84.65 0.45 1.42 15 7 N -0.91 -50.45 11.32 21.45 0.24 -50.21 15 8 Si 0.95 41.85 29.54 68.60 2.03 43.87 15 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 15 12 C -0.06 -2.56 4.74 -19.82 -0.09 -2.65 15 13 C -0.09 -3.23 8.68 22.30 0.19 -3.03 15 14 C 0.06 1.83 7.31 22.41 0.16 2.00 15 15 F -0.13 -4.12 17.18 44.97 0.77 -3.34 15 16 C 0.08 2.22 7.31 22.41 0.16 2.38 15 17 F -0.13 -3.48 17.18 44.97 0.77 -2.70 15 18 C -0.14 -4.03 10.00 22.35 0.22 -3.81 15 19 C 0.10 3.47 7.24 22.37 0.16 3.63 15 20 F -0.13 -5.03 16.19 44.97 0.73 -4.31 15 21 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.06 3.24 6.07 -2.39 -0.01 3.23 15 23 H 0.04 1.74 7.39 -2.38 -0.02 1.73 15 24 H 0.26 13.82 8.31 -92.71 -0.77 13.05 15 25 H 0.15 5.43 7.57 -2.91 -0.02 5.41 15 26 H 0.18 3.85 8.06 -2.91 -0.02 3.83 15 Total: -1.00 -54.74 243.06 7.83 -46.91 By element: Atomic # 1 Polarization: -2.51 SS G_CDS: 1.21 Total: -1.29 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 2.07 Total: -28.92 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.24 Total: -50.21 kcal Atomic # 9 Polarization: -12.63 SS G_CDS: 2.27 Total: -10.35 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -54.74 7.83 -46.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260426739.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.958 kcal (2) G-P(sol) polarization free energy of solvation -54.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds