Wall clock time and date at job start Mon Mar 30 2020 02:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00161 * 2 1 4 4 H 1.09000 * 109.47061 * 32.23223 * 3 2 1 5 5 C 1.50702 * 109.47748 * 272.23012 * 3 2 1 6 6 H 1.08000 * 119.99326 * 297.20492 * 5 3 2 7 7 C 1.37872 * 120.00080 * 117.47585 * 5 3 2 8 8 N 1.31513 * 119.99854 * 174.23901 * 7 5 3 9 9 Si 1.86802 * 119.99997 * 354.23793 * 7 5 3 10 10 H 1.48492 * 109.47294 * 84.87659 * 9 7 5 11 11 H 1.48503 * 109.47039 * 204.87929 * 9 7 5 12 12 H 1.48506 * 109.47251 * 324.87266 * 9 7 5 13 13 C 1.50700 * 109.46950 * 152.22853 * 3 2 1 14 14 C 1.35376 * 126.13736 * 45.02827 * 13 3 2 15 15 Cl 1.73601 * 126.04432 * 359.95923 * 14 13 3 16 16 C 1.39935 * 107.90725 * 179.97438 * 14 13 3 17 17 N 1.30852 * 108.21218 * 0.02562 * 16 14 13 18 18 N 1.35050 * 126.13795 * 224.72021 * 13 3 2 19 19 C 1.46506 * 126.03405 * 359.97438 * 18 13 3 20 20 H 1.08997 * 109.47058 * 304.01542 * 1 2 3 21 21 H 1.09004 * 109.46755 * 64.01219 * 1 2 3 22 22 H 1.08999 * 109.47363 * 184.01346 * 1 2 3 23 23 H 0.97005 * 119.99620 * 180.02562 * 8 7 5 24 24 H 1.08000 * 125.89102 * 179.97438 * 16 14 13 25 25 H 1.08992 * 109.47234 * 90.00417 * 19 18 13 26 26 H 1.08997 * 109.46817 * 210.00537 * 19 18 13 27 27 H 1.08998 * 109.46806 * 329.99971 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3639 1.9909 0.5481 5 6 2.1641 1.7869 -1.4197 6 1 2.8096 1.2553 -2.1032 7 6 1.4853 2.9093 -1.8444 8 7 1.7056 3.3955 -3.0463 9 14 0.2528 3.7394 -0.7125 10 1 0.9642 4.6816 0.1882 11 1 -0.7407 4.4864 -1.5252 12 1 -0.4453 2.7102 0.0992 13 6 3.3630 1.2529 0.6620 14 6 4.3208 0.3203 0.4484 15 17 4.2080 -1.0296 -0.6374 16 6 5.4176 0.6366 1.2578 17 7 5.1286 1.7194 1.9332 18 7 3.8397 2.1310 1.5706 19 6 3.1326 3.3054 2.0876 20 1 -0.3633 0.5749 0.8518 21 1 -0.3633 0.4503 -0.9238 22 1 -0.3634 -1.0251 0.0719 23 1 1.2282 4.1854 -3.3449 24 1 6.3425 0.0821 1.3157 25 1 2.5636 3.0258 2.9741 26 1 3.8551 4.0788 2.3484 27 1 2.4532 3.6854 1.3246 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260527111.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:39 Heat of formation + Delta-G solvation = 31.898880 kcal Electronic energy + Delta-G solvation = -14508.233324 eV Core-core repulsion = 11908.519848 eV Total energy + Delta-G solvation = -2599.713476 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.67716 -36.89092 -35.44841 -33.03291 -32.56179 -30.51801 -27.30622 -26.25124 -25.74193 -22.55952 -20.68164 -19.28373 -17.39423 -16.50274 -15.59233 -14.92677 -14.59080 -14.32484 -13.69409 -13.58932 -13.38917 -12.78455 -12.61997 -12.25147 -11.69365 -11.45809 -11.05575 -10.89763 -10.80840 -10.61412 -9.93877 -9.84524 -9.47637 -8.97690 -8.82661 -8.38806 -7.57506 -6.36923 -4.40704 2.37161 2.66441 2.94627 3.04476 3.10520 3.24658 3.55486 4.07246 4.69078 4.94487 5.05816 5.44412 5.47553 5.68655 5.72196 5.88417 6.05515 6.15350 6.42761 6.43780 6.54302 6.94137 7.20978 7.43475 8.04313 8.13044 8.34257 8.83407 9.21807 10.75136 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.013128 C = 0.011055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.132824 B = 2132.262718 C = 2532.217427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.382 6.382 3 C 0.239 3.761 4 H 0.032 0.968 5 C -0.519 4.519 6 H 0.093 0.907 7 C 0.080 3.920 8 N -0.874 5.874 9 Si 0.856 3.144 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.259 1.259 13 C 0.150 3.850 14 C -0.180 4.180 15 Cl -0.042 7.042 16 C 0.057 3.943 17 N -0.307 5.307 18 N -0.371 5.371 19 C 0.101 3.899 20 H 0.022 0.978 21 H 0.042 0.958 22 H 0.070 0.930 23 H 0.270 0.730 24 H 0.183 0.817 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.105 -2.367 8.333 8.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.301 6.301 3 C 0.181 3.819 4 H 0.050 0.950 5 C -0.557 4.557 6 H 0.111 0.889 7 C -0.125 4.125 8 N -0.511 5.511 9 Si 0.682 3.318 10 H -0.196 1.196 11 H -0.204 1.204 12 H -0.184 1.184 13 C 0.021 3.979 14 C -0.218 4.218 15 Cl -0.014 7.014 16 C -0.129 4.129 17 N -0.129 5.129 18 N -0.155 5.155 19 C -0.041 4.041 20 H 0.040 0.960 21 H 0.061 0.939 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.200 0.800 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.499 -1.525 9.026 9.167 hybrid contribution -1.123 0.235 -0.254 1.175 sum -0.624 -1.289 8.771 8.888 Atomic orbital electron populations 1.22514 0.82938 1.00539 0.99371 1.87902 1.17783 1.29345 1.95061 1.18538 0.84618 0.83389 0.95374 0.95007 1.21248 1.29160 1.11398 0.93921 0.88937 1.25112 0.96081 0.96159 0.95124 1.69871 1.40835 1.22437 1.17911 0.87273 0.82638 0.80292 0.81574 1.19627 1.20421 1.18385 1.21182 0.98330 0.89108 0.89298 1.20177 0.96793 0.98421 1.06423 1.98273 1.98244 1.42255 1.62611 1.23668 0.98883 0.95052 0.95275 1.77267 0.95902 1.15324 1.24364 1.47982 1.12420 1.22073 1.33005 1.21908 0.96875 0.85294 1.00019 0.95991 0.93921 0.91134 0.92011 0.79969 0.91115 0.89264 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 10.28 101.05 1.04 1.87 15 2 O -0.38 -8.69 9.24 -35.23 -0.33 -9.02 15 3 C 0.24 5.60 2.15 -29.03 -0.06 5.54 15 4 H 0.03 0.72 3.40 -51.93 -0.18 0.54 15 5 C -0.52 -14.00 9.13 -34.44 -0.31 -14.31 15 6 H 0.09 2.80 8.06 -52.49 -0.42 2.38 15 7 C 0.08 2.15 5.47 -17.82 -0.10 2.06 15 8 N -0.87 -25.08 13.96 55.43 0.77 -24.31 15 9 Si 0.86 18.97 25.90 -169.99 -4.40 14.56 15 10 H -0.27 -5.59 6.39 56.52 0.36 -5.23 15 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 12 H -0.26 -5.37 5.80 56.52 0.33 -5.04 15 13 C 0.15 3.37 5.91 -82.20 -0.49 2.89 15 14 C -0.18 -3.85 6.56 -39.97 -0.26 -4.12 15 15 Cl -0.04 -0.86 28.17 -51.86 -1.46 -2.32 15 16 C 0.06 1.08 12.02 -17.33 -0.21 0.87 15 17 N -0.31 -6.08 12.57 30.64 0.39 -5.70 15 18 N -0.37 -7.58 4.02 -63.85 -0.26 -7.84 15 19 C 0.10 1.64 11.06 59.85 0.66 2.30 15 20 H 0.02 0.39 7.60 -51.93 -0.39 -0.01 15 21 H 0.04 0.86 8.14 -51.93 -0.42 0.43 15 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 24 H 0.18 2.67 8.06 -52.49 -0.42 2.25 15 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 27 H 0.09 1.53 5.43 -51.93 -0.28 1.25 15 LS Contribution 249.15 15.07 3.75 3.75 Total: -1.00 -30.17 249.15 -3.90 -34.07 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -2.64 Total: -0.31 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 0.27 Total: -2.91 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.90 Total: -37.84 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.33 Total: -9.02 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.40 Total: 14.56 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.46 Total: -2.32 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.17 -3.90 -34.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527111.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.969 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds