Wall clock time and date at job start Mon Mar 30 2020 02:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99681 * 2 1 4 4 H 1.08998 * 109.47231 * 30.00417 * 3 2 1 5 5 C 1.50705 * 109.46695 * 150.00135 * 3 2 1 6 6 H 1.08000 * 119.99772 * 120.00185 * 5 3 2 7 7 C 1.37876 * 120.00217 * 299.99332 * 5 3 2 8 8 N 1.31516 * 120.00156 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99732 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.47273 * 89.99485 * 9 7 5 11 11 H 1.48496 * 109.47095 * 209.99340 * 9 7 5 12 12 H 1.48497 * 109.47247 * 329.99555 * 9 7 5 13 13 C 1.50701 * 109.47466 * 269.99842 * 3 2 1 14 14 C 1.35374 * 126.13555 * 315.03217 * 13 3 2 15 15 Cl 1.73601 * 126.04420 * 359.93779 * 14 13 3 16 16 C 1.39928 * 107.90796 * 179.97438 * 14 13 3 17 17 N 1.30847 * 108.21156 * 359.75431 * 16 14 13 18 18 N 1.35042 * 126.13872 * 135.00100 * 13 3 2 19 19 C 1.46506 * 126.03304 * 359.97438 * 18 13 3 20 20 H 1.09005 * 109.47313 * 299.99919 * 1 2 3 21 21 H 1.09005 * 109.47041 * 59.99495 * 1 2 3 22 22 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 23 23 H 0.96994 * 119.99765 * 179.97438 * 8 7 5 24 24 H 1.08002 * 125.89041 * 179.97438 * 16 14 13 25 25 H 1.09001 * 109.47060 * 90.00497 * 19 18 13 26 26 H 1.09004 * 109.47073 * 209.99986 * 19 18 13 27 27 H 1.09000 * 109.47212 * 330.00068 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 3.3386 1.2639 0.7104 6 1 4.2406 1.5420 0.1855 7 6 3.4025 0.8709 2.0305 8 7 4.5619 0.8341 2.6503 9 14 1.8424 0.3894 2.9381 10 1 1.6040 -1.0672 2.7744 11 1 1.9910 0.7076 4.3809 12 1 0.6921 1.1450 2.3805 13 6 2.2145 1.7645 -1.4208 14 6 2.7321 1.0271 -2.4313 15 17 3.2801 -0.6163 -2.3198 16 6 2.7479 1.8242 -3.5812 17 7 2.2528 2.9957 -3.2736 18 7 1.9137 2.9849 -1.9145 19 6 1.3296 4.0986 -1.1630 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 4.6067 0.5580 3.5790 24 1 3.1038 1.5231 -4.5555 25 1 2.1270 4.7053 -0.7340 26 1 0.7265 4.7120 -1.8325 27 1 0.7006 3.7071 -0.3635 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260527163.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:40 Heat of formation + Delta-G solvation = 13.889717 kcal Electronic energy + Delta-G solvation = -14521.002887 eV Core-core repulsion = 11920.508475 eV Total energy + Delta-G solvation = -2600.494412 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.25728 -38.74679 -37.05055 -34.81284 -34.14759 -32.12681 -29.26253 -27.58087 -27.09795 -24.65290 -22.16795 -20.84498 -19.28178 -18.15992 -17.09329 -16.81275 -16.30703 -15.94480 -15.24630 -15.12984 -14.93630 -14.70183 -13.88634 -13.42864 -13.20948 -12.91369 -12.88635 -12.45080 -12.37060 -12.26300 -11.64377 -11.58576 -11.21950 -10.84555 -10.51279 -10.28608 -9.19790 -8.34952 -6.49942 0.77410 1.20599 1.34418 1.45411 1.50899 1.65937 2.02521 2.35209 2.79283 3.53301 3.70280 3.77896 4.15165 4.28288 4.42188 4.51443 4.55912 4.62264 4.66014 4.81479 4.94930 5.32235 5.44595 5.89343 6.16681 6.44658 6.58844 6.70859 7.21986 8.78299 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.026071 B = 0.012280 C = 0.011066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.722553 B = 2279.603796 C = 2529.627727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.384 6.384 3 C 0.252 3.748 4 H 0.045 0.955 5 C -0.507 4.507 6 H 0.037 0.963 7 C 0.037 3.963 8 N -0.929 5.929 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.297 1.297 12 H -0.236 1.236 13 C 0.097 3.903 14 C -0.194 4.194 15 Cl -0.044 7.044 16 C 0.059 3.941 17 N -0.309 5.309 18 N -0.370 5.370 19 C 0.093 3.907 20 H 0.043 0.957 21 H 0.040 0.960 22 H 0.096 0.904 23 H 0.271 0.729 24 H 0.218 0.782 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.040 2.556 -6.961 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.302 6.302 3 C 0.194 3.806 4 H 0.063 0.937 5 C -0.544 4.544 6 H 0.055 0.945 7 C -0.165 4.165 8 N -0.567 5.567 9 Si 0.781 3.219 10 H -0.199 1.199 11 H -0.225 1.225 12 H -0.160 1.160 13 C -0.033 4.033 14 C -0.232 4.232 15 Cl -0.016 7.016 16 C -0.127 4.127 17 N -0.131 5.131 18 N -0.154 5.154 19 C -0.046 4.046 20 H 0.062 0.938 21 H 0.059 0.941 22 H 0.114 0.886 23 H 0.080 0.920 24 H 0.234 0.766 25 H 0.100 0.900 26 H 0.133 0.867 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.174 3.520 -7.160 12.929 hybrid contribution 0.134 -1.089 0.833 1.378 sum -10.039 2.431 -6.326 12.113 Atomic orbital electron populations 1.23049 0.82513 1.03450 0.99894 1.88261 1.19011 1.29588 1.93389 1.18590 0.94084 0.83063 0.84867 0.93725 1.20711 0.91774 1.46417 0.95528 0.94478 1.25798 0.99643 0.92880 0.98139 1.70030 1.26998 1.47273 1.12450 0.85694 0.80238 0.79917 0.76036 1.19900 1.22498 1.15986 1.21844 0.97481 0.86362 0.97599 1.20613 1.16485 0.90707 0.95436 1.98280 1.88720 1.16207 1.98400 1.24199 0.99088 0.89689 0.99714 1.77237 1.22244 1.21204 0.92370 1.48502 1.49038 1.10721 1.07140 1.22203 0.99517 0.86683 0.96234 0.93843 0.94087 0.88559 0.91987 0.76560 0.89976 0.86744 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 10.18 113.37 1.15 1.40 15 2 O -0.38 -16.79 7.31 -148.98 -1.09 -17.87 15 3 C 0.25 11.35 1.64 29.10 0.05 11.40 15 4 H 0.05 1.87 5.47 -2.39 -0.01 1.86 15 5 C -0.51 -28.04 9.36 25.60 0.24 -27.80 15 6 H 0.04 2.35 7.98 -2.91 -0.02 2.32 15 7 C 0.04 2.05 5.47 84.65 0.46 2.51 15 8 N -0.93 -56.12 13.96 21.45 0.30 -55.83 15 9 Si 0.96 43.20 25.42 68.60 1.74 44.95 15 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 11 H -0.30 -13.27 7.11 99.48 0.71 -12.57 15 12 H -0.24 -9.24 5.08 99.48 0.51 -8.73 15 13 C 0.10 4.07 5.82 41.40 0.24 4.31 15 14 C -0.19 -7.88 6.56 22.02 0.14 -7.74 15 15 Cl -0.04 -1.80 28.17 -2.72 -0.08 -1.88 15 16 C 0.06 2.03 12.02 85.25 1.02 3.05 15 17 N -0.31 -11.01 12.57 -56.98 -0.72 -11.72 15 18 N -0.37 -13.44 4.02 -355.89 -1.43 -14.87 15 19 C 0.09 2.45 11.24 127.77 1.44 3.88 15 20 H 0.04 1.36 6.23 -2.38 -0.01 1.34 15 21 H 0.04 1.25 8.14 -2.38 -0.02 1.23 15 22 H 0.10 2.77 8.14 -2.39 -0.02 2.75 15 23 H 0.27 15.27 8.31 -92.71 -0.77 14.49 15 24 H 0.22 5.59 8.06 -2.91 -0.02 5.57 15 25 H 0.08 2.10 8.14 -2.39 -0.02 2.08 15 26 H 0.11 2.29 8.14 -2.38 -0.02 2.27 15 27 H 0.10 2.31 6.92 -2.39 -0.02 2.30 15 Total: -1.00 -67.53 248.56 4.46 -63.07 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 0.98 Total: 3.14 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 4.75 Total: -8.99 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -1.85 Total: -82.42 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -1.09 Total: -17.87 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.74 Total: 44.95 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.88 kcal Total: -67.53 4.46 -63.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527163.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.957 kcal (2) G-P(sol) polarization free energy of solvation -67.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds