Wall clock time and date at job start Mon Mar 30 2020 02:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.38658 * 125.95727 * 2 1 4 4 Cl 1.73603 * 126.04804 * 0.02562 * 3 2 1 5 5 C 1.32981 * 107.91021 * 180.02562 * 3 2 1 6 6 C 1.50700 * 126.07002 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.46869 * 95.02494 * 6 5 3 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48501 * 109.47188 * 90.00793 * 11 9 7 13 13 H 1.48501 * 109.47085 * 210.00372 * 11 9 7 14 14 H 1.48498 * 109.47634 * 330.00608 * 11 9 7 15 15 N 1.38865 * 107.86736 * 0.24337 * 5 3 2 16 16 C 1.46500 * 126.00232 * 179.72204 * 15 5 3 17 17 C 1.34744 * 125.96225 * 180.02562 * 2 1 3 18 18 O 1.21801 * 125.92759 * 359.97438 * 17 2 1 19 19 H 1.08995 * 109.47199 * 89.99799 * 1 2 3 20 20 H 1.09001 * 109.46411 * 210.00139 * 1 2 3 21 21 H 1.08996 * 109.46807 * 329.99207 * 1 2 3 22 22 H 1.09004 * 109.47210 * 335.02788 * 6 5 3 23 23 H 1.08994 * 109.47551 * 215.02440 * 6 5 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 25 25 H 1.08995 * 109.46739 * 89.99657 * 16 15 5 26 26 H 1.08998 * 109.46828 * 209.99808 * 16 15 5 27 27 H 1.08997 * 109.46736 * 329.99924 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2793 1.1224 0.0000 4 17 1.7430 2.7735 0.0006 5 6 3.5437 0.7104 -0.0006 6 6 4.7647 1.5937 -0.0013 7 6 5.2453 1.7875 1.4138 8 1 4.7194 1.3177 2.2319 9 6 6.3600 2.5595 1.6636 10 7 7.0006 3.1313 0.6675 11 14 6.9602 2.7935 3.4170 12 1 7.9324 1.7228 3.7544 13 1 7.6197 4.1181 3.5419 14 1 5.8059 2.7254 4.3487 15 7 3.5393 -0.6782 -0.0065 16 6 4.7218 -1.5431 -0.0149 17 6 2.2564 -1.0906 -0.0005 18 8 1.8778 -2.2483 -0.0006 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3632 -0.8900 0.5139 21 1 -0.3633 0.8899 0.5139 22 1 4.5128 2.5614 -0.4352 23 1 5.5520 1.1248 -0.5914 24 1 7.7846 3.6748 0.8433 25 1 5.0190 -1.7619 1.0107 26 1 4.4876 -2.4737 -0.5318 27 1 5.5383 -1.0369 -0.5297 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260901206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:51 Heat of formation + Delta-G solvation = 4.442169 kcal Electronic energy + Delta-G solvation = -14149.460517 eV Core-core repulsion = 11548.556428 eV Total energy + Delta-G solvation = -2600.904088 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.76810 -36.68664 -35.97656 -34.98944 -33.18202 -30.55854 -29.10826 -25.95749 -25.44449 -23.10329 -20.52736 -19.93765 -16.97542 -16.66698 -15.97137 -15.15355 -14.95717 -14.54863 -14.05896 -13.75040 -12.75219 -12.64712 -12.47509 -12.28838 -12.02346 -11.84888 -11.40906 -10.92528 -10.74267 -10.67605 -10.36620 -10.18348 -9.73562 -9.56999 -9.19193 -8.53382 -7.03197 -6.14453 -4.19817 2.26910 2.68090 2.72270 3.25265 3.28714 3.32715 3.37477 4.16276 4.37243 5.06440 5.20718 5.45588 5.46867 5.68804 5.81037 5.84165 6.02488 6.11825 6.32265 6.76043 7.17044 7.33109 7.36244 7.79309 7.84674 8.12343 8.69329 8.82977 9.44910 10.94268 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.028143 B = 0.009532 C = 0.008004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.692745 B = 2936.735337 C = 3497.620596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.532 5.532 3 C 0.004 3.996 4 Cl -0.009 7.009 5 C 0.118 3.882 6 C 0.078 3.922 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.890 5.890 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.273 1.273 15 N -0.525 5.525 16 C 0.107 3.893 17 C 0.652 3.348 18 O -0.585 6.585 19 H 0.064 0.936 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.054 0.946 23 H 0.037 0.963 24 H 0.264 0.736 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -2.694 -2.003 8.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.256 5.256 3 C -0.124 4.124 4 Cl 0.019 6.981 5 C 0.011 3.989 6 C 0.040 3.960 7 C -0.552 4.552 8 H 0.076 0.924 9 C -0.138 4.138 10 N -0.529 5.529 11 Si 0.723 3.277 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 N -0.243 5.243 16 C -0.035 4.035 17 C 0.355 3.645 18 O -0.465 6.465 19 H 0.082 0.918 20 H 0.100 0.900 21 H 0.098 0.902 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.918 -3.288 -2.048 8.815 hybrid contribution 0.226 0.436 1.006 1.119 sum -7.692 -2.852 -1.043 8.270 Atomic orbital electron populations 1.21605 0.75955 1.03763 1.02546 1.45019 1.06915 1.04911 1.68757 1.19695 0.88208 0.82071 1.22427 1.98331 1.90260 1.11747 1.97783 1.21157 0.95890 0.82416 0.99410 1.18063 0.86521 0.92643 0.98739 1.20912 1.11654 1.31302 0.91374 0.92407 1.24937 0.96307 0.95280 0.97306 1.69935 1.19575 1.32477 1.30890 0.86522 0.78986 0.77573 0.84585 1.20567 1.21063 1.19760 1.45343 1.06640 1.06365 1.65979 1.21668 0.85225 0.93295 1.03293 1.15971 0.81041 0.84299 0.83188 1.90973 1.77434 1.15811 1.62291 0.91777 0.89995 0.90223 0.92844 0.94472 0.92624 0.91250 0.90569 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.41 10.92 59.85 0.65 2.06 15 2 N -0.53 -9.80 3.18 -125.36 -0.40 -10.19 15 3 C 0.00 0.07 7.42 -16.28 -0.12 -0.05 15 4 Cl -0.01 -0.16 28.25 -51.86 -1.46 -1.63 15 5 C 0.12 2.50 6.11 -81.22 -0.50 2.01 15 6 C 0.08 1.85 5.04 -29.03 -0.15 1.70 15 7 C -0.51 -13.35 9.09 -34.44 -0.31 -13.66 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 10 N -0.89 -24.53 13.29 55.43 0.74 -23.79 15 11 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 15 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 13 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 15 N -0.52 -10.52 3.18 -124.16 -0.40 -10.91 15 16 C 0.11 1.78 10.89 59.85 0.65 2.43 15 17 C 0.65 13.40 8.52 -86.96 -0.74 12.66 15 18 O -0.58 -13.03 17.64 5.10 0.09 -12.94 15 19 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.08 1.07 8.07 -51.93 -0.42 0.65 15 21 H 0.08 0.95 7.88 -51.93 -0.41 0.54 15 22 H 0.05 1.32 7.69 -51.93 -0.40 0.92 15 23 H 0.04 0.90 7.33 -51.93 -0.38 0.52 15 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.08 1.13 8.08 -51.93 -0.42 0.72 15 27 H 0.09 1.43 7.25 -51.93 -0.38 1.06 15 LS Contribution 258.48 15.07 3.90 3.90 Total: -1.00 -30.07 258.48 -5.96 -36.03 By element: Atomic # 1 Polarization: -1.94 SS G_CDS: -2.79 Total: -4.73 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -0.61 Total: 8.75 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.06 Total: -44.90 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.46 Total: -1.63 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.07 -5.96 -36.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260901206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.468 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds