Wall clock time and date at job start Mon Mar 30 2020 02:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.38658 * 125.95727 * 2 1 4 4 Cl 1.73603 * 126.04804 * 0.02562 * 3 2 1 5 5 C 1.32981 * 107.91021 * 180.02562 * 3 2 1 6 6 C 1.50700 * 126.07002 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.46869 * 95.02494 * 6 5 3 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48501 * 109.47188 * 90.00793 * 11 9 7 13 13 H 1.48501 * 109.47085 * 210.00372 * 11 9 7 14 14 H 1.48498 * 109.47634 * 330.00608 * 11 9 7 15 15 N 1.38865 * 107.86736 * 0.24337 * 5 3 2 16 16 C 1.46500 * 126.00232 * 179.72204 * 15 5 3 17 17 C 1.34744 * 125.96225 * 180.02562 * 2 1 3 18 18 O 1.21801 * 125.92759 * 359.97438 * 17 2 1 19 19 H 1.08995 * 109.47199 * 89.99799 * 1 2 3 20 20 H 1.09001 * 109.46411 * 210.00139 * 1 2 3 21 21 H 1.08996 * 109.46807 * 329.99207 * 1 2 3 22 22 H 1.09004 * 109.47210 * 335.02788 * 6 5 3 23 23 H 1.08994 * 109.47551 * 215.02440 * 6 5 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 25 25 H 1.08995 * 109.46739 * 89.99657 * 16 15 5 26 26 H 1.08998 * 109.46828 * 209.99808 * 16 15 5 27 27 H 1.08997 * 109.46736 * 329.99924 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2793 1.1224 0.0000 4 17 1.7430 2.7735 0.0006 5 6 3.5437 0.7104 -0.0006 6 6 4.7647 1.5937 -0.0013 7 6 5.2453 1.7875 1.4138 8 1 4.7194 1.3177 2.2319 9 6 6.3600 2.5595 1.6636 10 7 7.0006 3.1313 0.6675 11 14 6.9602 2.7935 3.4170 12 1 7.9324 1.7228 3.7544 13 1 7.6197 4.1181 3.5419 14 1 5.8059 2.7254 4.3487 15 7 3.5393 -0.6782 -0.0065 16 6 4.7218 -1.5431 -0.0149 17 6 2.2564 -1.0906 -0.0005 18 8 1.8778 -2.2483 -0.0006 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3632 -0.8900 0.5139 21 1 -0.3633 0.8899 0.5139 22 1 4.5128 2.5614 -0.4352 23 1 5.5520 1.1248 -0.5914 24 1 7.7846 3.6748 0.8433 25 1 5.0190 -1.7619 1.0107 26 1 4.4876 -2.4737 -0.5318 27 1 5.5383 -1.0369 -0.5297 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260901206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:51 Heat of formation + Delta-G solvation = -13.058729 kcal Electronic energy + Delta-G solvation = -14150.219412 eV Core-core repulsion = 11548.556428 eV Total energy + Delta-G solvation = -2601.662984 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.30757 -38.27993 -37.49999 -36.46206 -35.11408 -32.23911 -30.60885 -27.65147 -26.80932 -24.92326 -22.10034 -21.48532 -18.64169 -18.38256 -17.62200 -16.77106 -16.52459 -16.29969 -15.55739 -15.01934 -14.47304 -14.40283 -13.91837 -13.55575 -13.46532 -13.29546 -13.20262 -12.72170 -12.54301 -12.17398 -12.00032 -11.93846 -11.42964 -11.38566 -10.69414 -10.55414 -8.64029 -8.13572 -6.27156 0.73247 1.08166 1.30532 1.44847 1.47597 1.56866 1.71736 2.45237 2.69623 3.17227 3.79798 4.14460 4.33137 4.42315 4.43999 4.49968 4.67150 4.75886 4.89567 5.30637 5.33051 5.46880 5.73083 5.76304 6.15481 6.25612 6.80511 7.14307 7.40941 8.92699 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.028143 B = 0.009532 C = 0.008004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.692745 B = 2936.735337 C = 3497.620596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.527 5.527 3 C 0.017 3.983 4 Cl 0.011 6.989 5 C 0.089 3.911 6 C 0.092 3.908 7 C -0.522 4.522 8 H 0.050 0.950 9 C 0.020 3.980 10 N -0.920 5.920 11 Si 0.954 3.046 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.271 1.271 15 N -0.526 5.526 16 C 0.101 3.899 17 C 0.642 3.358 18 O -0.607 6.607 19 H 0.085 0.915 20 H 0.088 0.912 21 H 0.099 0.901 22 H 0.039 0.961 23 H 0.024 0.976 24 H 0.266 0.734 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.536 -2.609 -1.439 9.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.250 5.250 3 C -0.112 4.112 4 Cl 0.039 6.961 5 C -0.018 4.018 6 C 0.054 3.946 7 C -0.560 4.560 8 H 0.068 0.932 9 C -0.179 4.179 10 N -0.560 5.560 11 Si 0.779 3.221 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.196 1.196 15 N -0.244 5.244 16 C -0.039 4.039 17 C 0.344 3.656 18 O -0.489 6.489 19 H 0.103 0.897 20 H 0.107 0.893 21 H 0.117 0.883 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.726 -3.203 -1.486 9.413 hybrid contribution 0.402 0.442 0.797 0.996 sum -8.323 -2.761 -0.689 8.796 Atomic orbital electron populations 1.21994 0.73194 1.05116 1.04416 1.45275 1.08508 1.03815 1.67356 1.19839 0.88186 0.83201 1.19955 1.98341 1.90006 1.10188 1.97598 1.20798 0.95764 0.82927 1.02327 1.17713 0.87215 0.92348 0.97309 1.21116 1.11658 1.30968 0.92252 0.93218 1.25634 0.96498 0.95078 1.00714 1.70025 1.20079 1.33202 1.32663 0.85613 0.78477 0.77626 0.80354 1.19911 1.20716 1.19607 1.45517 1.07394 1.06147 1.65391 1.21858 0.84555 0.93668 1.03853 1.16100 0.81282 0.84486 0.83685 1.90948 1.77768 1.16597 1.63606 0.89667 0.89309 0.88253 0.94273 0.95744 0.92466 0.90908 0.88815 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.29 10.92 127.77 1.40 3.68 15 2 N -0.53 -18.46 3.18 -668.72 -2.12 -20.58 15 3 C 0.02 0.65 7.42 82.44 0.61 1.27 15 4 Cl 0.01 0.35 28.25 -2.72 -0.08 0.27 15 5 C 0.09 3.73 6.11 40.28 0.25 3.98 15 6 C 0.09 4.37 5.04 29.10 0.15 4.52 15 7 C -0.52 -26.98 9.09 25.60 0.23 -26.75 15 8 H 0.05 2.61 7.74 -2.91 -0.02 2.58 15 9 C 0.02 1.06 5.46 84.66 0.46 1.53 15 10 N -0.92 -50.65 13.29 21.45 0.28 -50.37 15 11 Si 0.95 41.60 29.54 68.60 2.03 43.62 15 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 13 H -0.28 -12.06 7.11 99.48 0.71 -11.36 15 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 15 N -0.53 -20.76 3.18 -664.90 -2.12 -22.87 15 16 C 0.10 3.32 10.89 127.77 1.39 4.72 15 17 C 0.64 25.65 8.52 179.07 1.53 27.17 15 18 O -0.61 -26.37 17.64 -4.67 -0.08 -26.46 15 19 H 0.08 1.77 8.14 -2.39 -0.02 1.76 15 20 H 0.09 2.10 8.07 -2.39 -0.02 2.08 15 21 H 0.10 2.05 7.88 -2.39 -0.02 2.04 15 22 H 0.04 1.95 7.69 -2.38 -0.02 1.93 15 23 H 0.02 1.20 7.33 -2.39 -0.02 1.19 15 24 H 0.27 13.89 8.31 -92.70 -0.77 13.12 15 25 H 0.07 2.32 8.14 -2.39 -0.02 2.30 15 26 H 0.09 2.71 8.08 -2.39 -0.02 2.69 15 27 H 0.09 2.95 7.25 -2.39 -0.02 2.93 15 Total: -1.00 -61.98 258.48 5.10 -56.88 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: 1.18 Total: -0.60 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 6.01 Total: 20.11 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -3.96 Total: -93.83 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.08 Total: -26.46 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.27 kcal Total: -61.98 5.10 -56.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260901206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.820 kcal (2) G-P(sol) polarization free energy of solvation -61.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds