Wall clock time and date at job start Mon Mar 30 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.46880 * 2 1 4 4 C 1.50695 * 109.47618 * 119.99956 * 2 1 3 5 5 H 1.08004 * 120.00098 * 114.36559 * 4 2 1 6 6 C 1.37878 * 120.00148 * 294.36838 * 4 2 1 7 7 N 1.31508 * 119.99840 * 157.11086 * 6 4 2 8 8 Si 1.86796 * 120.00057 * 337.11184 * 6 4 2 9 9 H 1.48498 * 109.47433 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47271 * 59.99495 * 8 6 4 11 11 H 1.48504 * 109.46944 * 299.99823 * 8 6 4 12 12 C 1.50704 * 109.47229 * 240.00560 * 2 1 3 13 13 C 1.35316 * 126.09115 * 299.68442 * 12 2 1 14 14 Cl 1.73601 * 126.07067 * 359.97438 * 13 12 2 15 15 C 1.40346 * 107.86457 * 179.88122 * 13 12 2 16 16 O 1.36011 * 125.95137 * 180.15005 * 15 13 12 17 17 N 1.31115 * 108.10000 * 0.38528 * 15 13 12 18 18 N 1.35061 * 126.09936 * 119.99480 * 12 2 1 19 19 C 1.46499 * 125.98951 * 0.02562 * 18 12 2 20 20 H 1.09004 * 109.47041 * 173.34953 * 1 2 3 21 21 H 1.08996 * 109.47363 * 293.34126 * 1 2 3 22 22 H 1.09001 * 109.47846 * 53.34636 * 1 2 3 23 23 H 0.96999 * 120.00419 * 354.92439 * 7 6 4 24 24 H 0.96694 * 113.99853 * 270.30186 * 16 15 13 25 25 H 1.08996 * 109.46828 * 89.99913 * 19 18 12 26 26 H 1.08993 * 109.47285 * 210.00375 * 19 18 12 27 27 H 1.09004 * 109.46843 * 329.99953 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8125 -0.9521 3.5405 8 14 1.4590 1.6522 2.6641 9 1 1.2401 1.9726 4.0975 10 1 0.2463 2.0120 1.8862 11 1 2.6207 2.4248 2.1555 12 6 2.0323 -0.7103 -1.2306 13 6 1.7875 -1.9990 -1.5629 14 17 0.8392 -3.1283 -0.6469 15 6 2.4345 -2.2600 -2.7806 16 8 2.4274 -3.4433 -3.4511 17 7 3.0513 -1.1658 -3.1569 18 7 2.8119 -0.1759 -2.1953 19 6 3.3192 1.1981 -2.2295 20 1 -0.3633 -1.0208 -0.1190 21 1 -0.3634 0.4071 0.9435 22 1 -0.3635 0.6135 -0.8244 23 1 1.9150 -1.9113 3.4383 24 1 3.1464 -4.0403 -3.2028 25 1 4.2841 1.2417 -1.7244 26 1 3.4365 1.5164 -3.2653 27 1 2.6143 1.8583 -1.7241 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261091627.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:57 Heat of formation + Delta-G solvation = 27.539765 kcal Electronic energy + Delta-G solvation = -14328.552865 eV Core-core repulsion = 11728.650364 eV Total energy + Delta-G solvation = -2599.902501 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.95683 -37.09803 -35.64404 -34.46343 -32.20953 -31.54988 -28.41051 -25.95878 -24.84274 -22.11092 -21.03911 -19.13706 -17.56478 -17.37872 -16.27862 -15.33267 -14.48726 -14.03808 -13.94844 -13.27871 -12.86393 -12.62997 -12.50730 -12.14909 -11.79500 -11.43522 -11.00332 -10.89682 -10.62432 -10.54656 -10.07388 -9.86699 -9.43452 -9.11299 -8.67761 -8.25973 -7.74030 -6.53187 -4.12653 2.14002 2.47631 2.89198 3.31529 3.32222 3.34574 3.52958 4.37370 4.42899 4.98013 5.12686 5.36161 5.40042 5.62620 5.84953 5.99517 6.35999 6.37898 6.51855 6.62784 6.91705 7.28565 7.29563 7.76919 7.88068 7.99997 8.34609 8.85040 9.51862 10.84282 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.011332 C = 0.009129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.238281 B = 2470.308034 C = 3066.540294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 H 0.032 0.968 4 C -0.593 4.593 5 H 0.066 0.934 6 C 0.042 3.958 7 N -0.891 5.891 8 Si 1.030 2.970 9 H -0.283 1.283 10 H -0.275 1.275 11 H -0.284 1.284 12 C 0.173 3.827 13 C -0.208 4.208 14 Cl -0.033 7.033 15 C 0.265 3.735 16 O -0.457 6.457 17 N -0.319 5.319 18 N -0.364 5.364 19 C 0.108 3.892 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.022 0.978 23 H 0.272 0.728 24 H 0.395 0.605 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 1.944 -9.145 9.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.053 3.947 3 H 0.049 0.951 4 C -0.631 4.631 5 H 0.085 0.915 6 C -0.165 4.165 7 N -0.524 5.524 8 Si 0.858 3.142 9 H -0.209 1.209 10 H -0.202 1.202 11 H -0.210 1.210 12 C 0.044 3.956 13 C -0.247 4.247 14 Cl -0.005 7.005 15 C 0.058 3.942 16 O -0.260 6.260 17 N -0.152 5.152 18 N -0.149 5.149 19 C -0.033 4.033 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.041 0.959 23 H 0.082 0.918 24 H 0.250 0.750 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.810 3.821 -9.134 9.934 hybrid contribution 0.230 -1.969 -0.327 2.010 sum 1.040 1.851 -9.461 9.696 Atomic orbital electron populations 1.22224 0.96727 1.01668 0.99848 1.17994 0.93180 0.94944 0.88593 0.95054 1.21703 1.41141 1.10836 0.89404 0.91546 1.25613 0.93418 1.05522 0.91897 1.70817 1.43147 1.06667 1.31734 0.84237 0.77142 0.76264 0.76544 1.20884 1.20154 1.21000 1.21485 0.90395 0.92543 0.91149 1.20453 1.13322 0.93359 0.97537 1.98282 1.70368 1.58701 1.73122 1.19617 0.97079 0.87364 0.90091 1.84856 1.53603 1.23252 1.64316 1.77269 1.25594 0.97557 1.14749 1.47817 1.40629 1.10401 1.16060 1.21853 1.00594 0.76987 1.03913 0.92024 0.92090 0.95889 0.91767 0.75005 0.90435 0.89543 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.84 37.15 0.33 -2.79 15 2 C 0.07 1.65 2.03 -92.93 -0.19 1.46 15 3 H 0.03 0.66 5.32 -51.92 -0.28 0.39 15 4 C -0.59 -15.48 7.99 -34.44 -0.28 -15.75 15 5 H 0.07 1.92 7.74 -52.48 -0.41 1.51 15 6 C 0.04 1.14 5.20 -17.82 -0.09 1.05 15 7 N -0.89 -25.94 13.69 55.43 0.76 -25.18 15 8 Si 1.03 23.16 26.44 -169.99 -4.49 18.67 15 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 10 H -0.28 -5.70 6.13 56.52 0.35 -5.36 15 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 12 C 0.17 3.68 5.62 -82.21 -0.46 3.21 15 13 C -0.21 -4.40 6.29 -39.83 -0.25 -4.66 15 14 Cl -0.03 -0.68 26.37 -51.86 -1.37 -2.05 15 15 C 0.27 5.19 8.46 -17.07 -0.14 5.04 15 16 O -0.46 -7.51 13.66 -19.78 -0.27 -7.78 15 17 N -0.32 -6.25 12.59 30.58 0.38 -5.87 15 18 N -0.36 -6.89 4.01 -63.86 -0.26 -7.15 15 19 C 0.11 1.48 11.13 59.85 0.67 2.15 15 20 H 0.06 1.33 6.01 -51.93 -0.31 1.02 15 21 H 0.06 1.33 5.45 -51.93 -0.28 1.04 15 22 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 23 H 0.27 7.98 8.73 -40.82 -0.36 7.63 15 24 H 0.39 4.48 9.06 45.56 0.41 4.89 15 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.09 1.15 7.04 -51.93 -0.37 0.78 15 LS Contribution 246.45 15.07 3.71 3.71 Total: -1.00 -30.97 246.45 -3.65 -34.63 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -1.71 Total: 1.30 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.42 Total: -10.28 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.89 Total: -38.20 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.27 Total: -7.78 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.49 Total: 18.67 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.37 Total: -2.05 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.97 -3.65 -34.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091627.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.166 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds