Wall clock time and date at job start Mon Mar 30 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.46880 * 2 1 4 4 C 1.50695 * 109.47618 * 119.99956 * 2 1 3 5 5 H 1.08004 * 120.00098 * 114.36559 * 4 2 1 6 6 C 1.37878 * 120.00148 * 294.36838 * 4 2 1 7 7 N 1.31508 * 119.99840 * 157.11086 * 6 4 2 8 8 Si 1.86796 * 120.00057 * 337.11184 * 6 4 2 9 9 H 1.48498 * 109.47433 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47271 * 59.99495 * 8 6 4 11 11 H 1.48504 * 109.46944 * 299.99823 * 8 6 4 12 12 C 1.50704 * 109.47229 * 240.00560 * 2 1 3 13 13 C 1.35316 * 126.09115 * 299.68442 * 12 2 1 14 14 Cl 1.73601 * 126.07067 * 359.97438 * 13 12 2 15 15 C 1.40346 * 107.86457 * 179.88122 * 13 12 2 16 16 O 1.36011 * 125.95137 * 180.15005 * 15 13 12 17 17 N 1.31115 * 108.10000 * 0.38528 * 15 13 12 18 18 N 1.35061 * 126.09936 * 119.99480 * 12 2 1 19 19 C 1.46499 * 125.98951 * 0.02562 * 18 12 2 20 20 H 1.09004 * 109.47041 * 173.34953 * 1 2 3 21 21 H 1.08996 * 109.47363 * 293.34126 * 1 2 3 22 22 H 1.09001 * 109.47846 * 53.34636 * 1 2 3 23 23 H 0.96999 * 120.00419 * 354.92439 * 7 6 4 24 24 H 0.96694 * 113.99853 * 270.30186 * 16 15 13 25 25 H 1.08996 * 109.46828 * 89.99913 * 19 18 12 26 26 H 1.08993 * 109.47285 * 210.00375 * 19 18 12 27 27 H 1.09004 * 109.46843 * 329.99953 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8125 -0.9521 3.5405 8 14 1.4590 1.6522 2.6641 9 1 1.2401 1.9726 4.0975 10 1 0.2463 2.0120 1.8862 11 1 2.6207 2.4248 2.1555 12 6 2.0323 -0.7103 -1.2306 13 6 1.7875 -1.9990 -1.5629 14 17 0.8392 -3.1283 -0.6469 15 6 2.4345 -2.2600 -2.7806 16 8 2.4274 -3.4433 -3.4511 17 7 3.0513 -1.1658 -3.1569 18 7 2.8119 -0.1759 -2.1953 19 6 3.3192 1.1981 -2.2295 20 1 -0.3633 -1.0208 -0.1190 21 1 -0.3634 0.4071 0.9435 22 1 -0.3635 0.6135 -0.8244 23 1 1.9150 -1.9113 3.4383 24 1 3.1464 -4.0403 -3.2028 25 1 4.2841 1.2417 -1.7244 26 1 3.4365 1.5164 -3.2653 27 1 2.6143 1.8583 -1.7241 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261091627.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:57 Heat of formation + Delta-G solvation = 2.541202 kcal Electronic energy + Delta-G solvation = -14329.636884 eV Core-core repulsion = 11728.650364 eV Total energy + Delta-G solvation = -2600.986520 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.45321 -38.45926 -37.26048 -36.26147 -33.70260 -33.30569 -30.00708 -27.23812 -26.75249 -23.84321 -22.47892 -20.75247 -19.40516 -18.96976 -17.71188 -16.75898 -16.01791 -15.58005 -15.44564 -14.99642 -14.58792 -14.16787 -13.84955 -13.46821 -13.37761 -13.17148 -12.55088 -12.52976 -12.29531 -12.18451 -11.73820 -11.57236 -11.14816 -10.91695 -10.32690 -10.13400 -9.31655 -8.64234 -6.24042 0.64060 1.06274 1.34046 1.55344 1.60801 1.78384 1.79961 2.59238 2.96348 3.10686 3.65617 3.96542 4.29239 4.41762 4.50525 4.64640 4.74996 4.81177 4.94840 5.05292 5.22297 5.59566 5.78046 6.05798 6.15748 6.43888 6.58308 6.67754 7.48865 8.71158 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.011332 C = 0.009129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.238281 B = 2470.308034 C = 3066.540294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 H 0.055 0.945 4 C -0.584 4.584 5 H 0.025 0.975 6 C -0.007 4.007 7 N -0.930 5.930 8 Si 1.068 2.932 9 H -0.296 1.296 10 H -0.243 1.243 11 H -0.256 1.256 12 C 0.154 3.846 13 C -0.228 4.228 14 Cl -0.041 7.041 15 C 0.264 3.736 16 O -0.458 6.458 17 N -0.322 5.322 18 N -0.358 5.358 19 C 0.091 3.909 20 H 0.049 0.951 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.253 0.747 24 H 0.416 0.584 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 4.000 -10.734 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.054 3.946 3 H 0.072 0.928 4 C -0.622 4.622 5 H 0.044 0.956 6 C -0.207 4.207 7 N -0.564 5.564 8 Si 0.889 3.111 9 H -0.223 1.223 10 H -0.167 1.167 11 H -0.180 1.180 12 C 0.024 3.976 13 C -0.267 4.267 14 Cl -0.013 7.013 15 C 0.058 3.942 16 O -0.264 6.264 17 N -0.155 5.155 18 N -0.143 5.143 19 C -0.048 4.048 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.275 0.725 25 H 0.107 0.893 26 H 0.132 0.868 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.851 5.870 -10.766 12.292 hybrid contribution 0.292 -2.703 0.085 2.720 sum 1.142 3.167 -10.681 11.199 Atomic orbital electron populations 1.22148 0.95803 1.01639 1.00730 1.17886 0.93826 0.95581 0.87321 0.92755 1.21724 1.39817 1.09301 0.91345 0.95622 1.27008 0.92822 1.09170 0.91677 1.70961 1.46692 1.05755 1.33014 0.83797 0.79429 0.71438 0.76474 1.22274 1.16663 1.18041 1.21335 0.91690 0.92872 0.91701 1.20762 1.13939 0.93650 0.98324 1.98272 1.70606 1.59037 1.73409 1.19666 0.96656 0.88277 0.89648 1.84811 1.54976 1.22729 1.63844 1.77251 1.25468 0.97753 1.15048 1.48237 1.39477 1.11624 1.14986 1.22348 1.01440 0.74697 1.06272 0.93234 0.92674 0.92850 0.93765 0.72470 0.89311 0.86839 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.83 8.84 71.98 0.64 -5.19 15 2 C 0.07 3.18 2.03 -12.29 -0.02 3.15 15 3 H 0.05 2.08 5.32 -2.38 -0.01 2.07 15 4 C -0.58 -30.46 7.99 25.60 0.20 -30.26 15 5 H 0.03 1.52 7.74 -2.91 -0.02 1.49 15 6 C -0.01 -0.39 5.20 84.66 0.44 0.05 15 7 N -0.93 -55.51 13.69 21.45 0.29 -55.22 15 8 Si 1.07 44.77 26.44 68.60 1.81 46.58 15 9 H -0.30 -13.05 7.11 99.48 0.71 -12.34 15 10 H -0.24 -8.87 6.13 99.48 0.61 -8.26 15 11 H -0.26 -9.54 7.11 99.48 0.71 -8.84 15 12 C 0.15 6.28 5.62 41.39 0.23 6.51 15 13 C -0.23 -9.46 6.29 22.11 0.14 -9.32 15 14 Cl -0.04 -1.72 26.37 -2.72 -0.07 -1.79 15 15 C 0.26 9.95 8.46 85.31 0.72 10.67 15 16 O -0.46 -14.31 13.66 -93.68 -1.28 -15.59 15 17 N -0.32 -11.90 12.59 -170.42 -2.14 -14.04 15 18 N -0.36 -12.61 4.01 -355.95 -1.43 -14.04 15 19 C 0.09 2.17 11.13 127.77 1.42 3.59 15 20 H 0.05 2.09 6.01 -2.38 -0.01 2.07 15 21 H 0.05 2.25 5.45 -2.39 -0.01 2.24 15 22 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.25 15.59 8.73 -92.71 -0.81 14.78 15 24 H 0.42 8.76 9.06 -74.06 -0.67 8.09 15 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 15 26 H 0.11 2.08 8.14 -2.39 -0.02 2.06 15 27 H 0.11 2.22 7.04 -2.38 -0.02 2.20 15 Total: -1.00 -66.98 246.45 1.36 -65.62 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.41 Total: 9.27 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 3.77 Total: -20.79 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -3.28 Total: -83.30 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -1.28 Total: -15.59 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.81 Total: 46.58 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.79 kcal Total: -66.98 1.36 -65.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091627.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.156 kcal (2) G-P(sol) polarization free energy of solvation -66.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds