Wall clock time and date at job start Mon Mar 30 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47165 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47095 * 299.99889 * 3 2 1 6 6 H 1.48497 * 109.47303 * 60.00217 * 3 2 1 7 7 C 1.39941 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00303 * 197.86660 * 7 2 1 9 9 C 1.41399 * 119.99804 * 17.86341 * 7 2 1 10 10 C 1.40715 * 120.24323 * 24.38577 * 9 7 2 11 11 C 1.37622 * 119.74325 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24778 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.74979 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.46849 * 5.00277 * 13 12 11 15 15 F 1.39893 * 109.46998 * 125.00051 * 13 12 11 16 16 C 1.52998 * 109.47267 * 245.00257 * 13 12 11 17 17 F 1.39892 * 109.47128 * 179.97438 * 16 13 12 18 18 F 1.39902 * 109.47108 * 300.00268 * 16 13 12 19 19 C 1.38634 * 120.50080 * 0.02562 * 12 11 10 20 20 C 1.37611 * 120.25415 * 359.97438 * 19 12 11 21 21 H 0.96999 * 119.99643 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.12970 * 359.97438 * 10 9 7 23 23 H 1.07996 * 119.87394 * 179.72192 * 11 10 9 24 24 H 1.08999 * 109.47138 * 59.99757 * 16 13 12 25 25 H 1.08008 * 119.87423 * 180.02562 * 19 12 11 26 26 H 1.07993 * 120.13264 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2344 0.2875 9 6 1.3521 -2.4071 -0.3746 10 6 0.2210 -2.3625 -1.2104 11 6 -0.4097 -3.5321 -1.5686 12 6 0.0657 -4.7508 -1.1097 13 6 -0.6340 -6.0246 -1.5085 14 1 -1.4259 -5.7961 -2.2219 15 9 0.2867 -6.8976 -2.0976 16 6 -1.2400 -6.6836 -0.2678 17 9 -1.8899 -7.8657 -0.6381 18 9 -0.2237 -6.9768 0.6479 19 6 1.1792 -4.8066 -0.2858 20 6 1.8258 -3.6499 0.0853 21 1 -0.4849 0.8401 0.0004 22 1 -0.1513 -1.4142 -1.5687 23 1 -1.2807 -3.5000 -2.2063 24 1 -1.9574 -6.0034 0.1912 25 1 1.5412 -5.7616 0.0656 26 1 2.6933 -3.6956 0.7268 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261190048.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:14 Heat of formation + Delta-G solvation = -146.679777 kcal Electronic energy + Delta-G solvation = -15574.694884 eV Core-core repulsion = 12395.521014 eV Total energy + Delta-G solvation = -3179.173869 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.88294 -46.97924 -46.68160 -37.67313 -34.10109 -31.57139 -29.46516 -28.52059 -25.27472 -22.58491 -21.17911 -20.20776 -17.51047 -17.40602 -17.07091 -16.62264 -15.53464 -15.21958 -14.87464 -14.08139 -13.55621 -13.49548 -13.21912 -13.10918 -12.91375 -12.37707 -12.04340 -11.87093 -11.64249 -11.24744 -11.08048 -10.70077 -10.49626 -10.38710 -9.66123 -9.54737 -9.29221 -7.66698 -7.53911 -6.94688 -4.54688 2.50985 2.94331 2.98924 3.01442 3.05337 3.80719 3.97548 4.39449 4.47818 4.76410 4.82295 5.31384 5.54521 5.64305 5.94123 6.15300 6.31507 6.80399 6.90730 7.08908 7.18087 7.45016 7.63425 7.87004 7.89805 8.12440 8.46220 8.71752 8.78770 9.99282 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.059260 B = 0.006253 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.378232 B = 4476.617133 C = 4554.479884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.120 3.880 10 C -0.171 4.171 11 C -0.076 4.076 12 C -0.281 4.281 13 C 0.120 3.880 14 H 0.100 0.900 15 F -0.205 7.205 16 C 0.241 3.759 17 F -0.211 7.211 18 F -0.194 7.194 19 C -0.054 4.054 20 C -0.230 4.230 21 H 0.283 0.717 22 H 0.121 0.879 23 H 0.092 0.908 24 H 0.123 0.877 25 H 0.098 0.902 26 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 -4.063 -1.115 5.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.117 3.883 10 C -0.191 4.191 11 C -0.094 4.094 12 C -0.283 4.283 13 C 0.083 3.917 14 H 0.118 0.882 15 F -0.185 7.185 16 C 0.187 3.813 17 F -0.192 7.192 18 F -0.176 7.176 19 C -0.072 4.072 20 C -0.249 4.249 21 H 0.094 0.906 22 H 0.139 0.861 23 H 0.110 0.890 24 H 0.140 0.860 25 H 0.116 0.884 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.180 -3.956 -1.096 5.193 hybrid contribution 0.328 0.607 0.093 0.697 sum -2.851 -3.349 -1.003 4.511 Atomic orbital electron populations 1.69822 1.07726 1.29546 1.33809 1.25986 0.94777 1.01634 0.91966 0.86217 0.81079 0.80535 0.78721 1.18220 1.19525 1.19815 1.19749 0.98354 0.91203 1.38910 0.90007 1.17731 0.90705 0.92135 0.87686 1.21273 0.99591 0.96652 1.01555 1.20451 0.98131 0.92250 0.98612 1.18917 1.04286 0.91511 1.13557 1.21129 0.90685 0.87643 0.92229 0.88185 1.92831 1.69234 1.71210 1.85266 1.22811 0.85794 0.83099 0.89644 1.92956 1.81911 1.52019 1.92355 1.92962 1.62051 1.94245 1.68303 1.20462 0.94123 0.97233 0.95406 1.20982 1.04028 0.92632 1.07268 0.90606 0.86087 0.89026 0.85964 0.88404 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.19 10.95 55.55 0.61 -18.59 15 2 C 0.08 1.80 5.14 -17.34 -0.09 1.71 15 3 Si 0.91 17.75 29.59 -169.99 -5.03 12.72 15 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 6 H -0.27 -5.24 7.11 56.52 0.40 -4.83 15 7 C -0.45 -11.55 9.05 -37.74 -0.34 -11.89 15 8 H 0.08 2.01 7.91 -52.48 -0.41 1.59 15 9 C 0.12 3.09 5.58 -106.82 -0.60 2.50 15 10 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 15 11 C -0.08 -1.65 9.64 -39.66 -0.38 -2.03 15 12 C -0.28 -5.92 5.07 -104.33 -0.53 -6.45 15 13 C 0.12 2.12 3.77 -27.88 -0.11 2.01 15 14 H 0.10 1.49 7.87 -51.93 -0.41 1.08 15 15 F -0.20 -4.01 16.89 2.25 0.04 -3.97 15 16 C 0.24 3.87 5.08 37.16 0.19 4.06 15 17 F -0.21 -3.37 17.32 2.25 0.04 -3.33 15 18 F -0.19 -3.56 15.03 2.25 0.03 -3.53 15 19 C -0.05 -1.21 8.67 -39.66 -0.34 -1.56 15 20 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 15 21 H 0.28 6.23 8.30 -40.82 -0.34 5.89 15 22 H 0.12 3.05 6.15 -52.49 -0.32 2.73 15 23 H 0.09 1.71 7.94 -52.49 -0.42 1.29 15 24 H 0.12 1.64 8.14 -51.93 -0.42 1.22 15 25 H 0.10 2.09 6.78 -52.48 -0.36 1.74 15 26 H 0.10 2.20 8.06 -52.49 -0.42 1.77 15 LS Contribution 242.74 15.07 3.66 3.66 Total: -1.00 -26.62 242.74 -5.47 -32.09 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -1.90 Total: 3.08 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -2.92 Total: -22.14 kcal Atomic # 7 Polarization: -19.19 SS G_CDS: 0.61 Total: -18.59 kcal Atomic # 9 Polarization: -10.94 SS G_CDS: 0.11 Total: -10.83 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -26.62 -5.47 -32.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190048.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.586 kcal (2) G-P(sol) polarization free energy of solvation -26.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds