Wall clock time and date at job start Mon Mar 30 2020 02:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47165 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47095 * 299.99889 * 3 2 1 6 6 H 1.48497 * 109.47303 * 60.00217 * 3 2 1 7 7 C 1.39941 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00303 * 197.86660 * 7 2 1 9 9 C 1.41399 * 119.99804 * 17.86341 * 7 2 1 10 10 C 1.40715 * 120.24323 * 24.38577 * 9 7 2 11 11 C 1.37622 * 119.74325 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24778 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.74979 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.46849 * 5.00277 * 13 12 11 15 15 F 1.39893 * 109.46998 * 125.00051 * 13 12 11 16 16 C 1.52998 * 109.47267 * 245.00257 * 13 12 11 17 17 F 1.39892 * 109.47128 * 179.97438 * 16 13 12 18 18 F 1.39902 * 109.47108 * 300.00268 * 16 13 12 19 19 C 1.38634 * 120.50080 * 0.02562 * 12 11 10 20 20 C 1.37611 * 120.25415 * 359.97438 * 19 12 11 21 21 H 0.96999 * 119.99643 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.12970 * 359.97438 * 10 9 7 23 23 H 1.07996 * 119.87394 * 179.72192 * 11 10 9 24 24 H 1.08999 * 109.47138 * 59.99757 * 16 13 12 25 25 H 1.08008 * 119.87423 * 180.02562 * 19 12 11 26 26 H 1.07993 * 120.13264 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2344 0.2875 9 6 1.3521 -2.4071 -0.3746 10 6 0.2210 -2.3625 -1.2104 11 6 -0.4097 -3.5321 -1.5686 12 6 0.0657 -4.7508 -1.1097 13 6 -0.6340 -6.0246 -1.5085 14 1 -1.4259 -5.7961 -2.2219 15 9 0.2867 -6.8976 -2.0976 16 6 -1.2400 -6.6836 -0.2678 17 9 -1.8899 -7.8657 -0.6381 18 9 -0.2237 -6.9768 0.6479 19 6 1.1792 -4.8066 -0.2858 20 6 1.8258 -3.6499 0.0853 21 1 -0.4849 0.8401 0.0004 22 1 -0.1513 -1.4142 -1.5687 23 1 -1.2807 -3.5000 -2.2063 24 1 -1.9574 -6.0034 0.1912 25 1 1.5412 -5.7616 0.0656 26 1 2.6933 -3.6956 0.7268 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261190048.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:13 Heat of formation + Delta-G solvation = -159.531531 kcal Electronic energy + Delta-G solvation = -15575.252178 eV Core-core repulsion = 12395.521014 eV Total energy + Delta-G solvation = -3179.731163 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.21172 -48.43511 -48.00366 -39.45936 -35.86841 -33.22687 -31.25982 -30.16133 -26.96794 -24.10942 -22.96199 -21.88681 -19.31369 -18.74187 -18.44225 -18.02661 -17.25020 -16.73900 -16.38725 -15.77241 -15.03751 -14.93802 -14.85152 -14.64311 -14.38429 -14.01056 -13.78070 -13.42253 -13.25270 -12.82361 -12.73911 -12.45483 -12.03563 -11.87448 -11.34713 -11.30669 -11.04133 -9.47843 -9.37109 -8.71985 -6.43280 0.77948 1.09754 1.39007 1.46276 1.53815 2.18790 2.52929 2.77787 3.17894 3.40370 3.51624 3.70638 3.94775 4.24039 4.41265 4.47760 4.64816 4.98303 5.10243 5.27438 5.37171 5.63143 5.82085 6.03173 6.06442 6.30821 6.61696 6.86588 6.93713 8.24961 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.059260 B = 0.006253 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.378232 B = 4476.617133 C = 4554.479884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.039 3.961 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.264 1.264 7 C -0.493 4.493 8 H 0.076 0.924 9 C 0.090 3.910 10 C -0.195 4.195 11 C -0.071 4.071 12 C -0.270 4.270 13 C 0.117 3.883 14 H 0.138 0.862 15 F -0.216 7.216 16 C 0.242 3.758 17 F -0.208 7.208 18 F -0.210 7.210 19 C -0.060 4.060 20 C -0.250 4.250 21 H 0.292 0.708 22 H 0.109 0.891 23 H 0.128 0.872 24 H 0.156 0.844 25 H 0.107 0.893 26 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.021 -4.173 -1.621 6.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.522 4.522 8 H 0.094 0.906 9 C 0.088 3.912 10 C -0.214 4.214 11 C -0.089 4.089 12 C -0.272 4.272 13 C 0.080 3.920 14 H 0.156 0.844 15 F -0.197 7.197 16 C 0.188 3.812 17 F -0.189 7.189 18 F -0.191 7.191 19 C -0.078 4.078 20 C -0.270 4.270 21 H 0.103 0.897 22 H 0.127 0.873 23 H 0.146 0.854 24 H 0.173 0.827 25 H 0.125 0.875 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.202 -4.089 -1.602 6.079 hybrid contribution 0.593 0.502 0.224 0.808 sum -3.610 -3.588 -1.378 5.273 Atomic orbital electron populations 1.69842 1.08924 1.30946 1.34088 1.26755 0.95536 1.04467 0.90986 0.85148 0.79349 0.76048 0.79150 1.18425 1.18593 1.18888 1.19961 0.98490 0.92556 1.41165 0.90604 1.18068 0.91730 0.92827 0.88596 1.21300 1.00216 0.97406 1.02508 1.20792 0.98631 0.91391 0.98115 1.19260 1.03308 0.93081 1.11549 1.21355 0.90838 0.85891 0.93890 0.84421 1.92811 1.69928 1.71367 1.85561 1.22970 0.85942 0.83576 0.88684 1.92964 1.81661 1.51978 1.92323 1.92937 1.62978 1.94399 1.68829 1.20663 0.94620 0.96929 0.95596 1.21138 1.04684 0.93111 1.08043 0.89689 0.87296 0.85390 0.82689 0.87524 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.10 10.95 21.83 0.24 -39.86 15 2 C 0.04 1.89 5.14 85.26 0.44 2.33 15 3 Si 0.98 36.46 29.59 68.60 2.03 38.49 15 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 5 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 6 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 7 C -0.49 -25.89 9.05 23.46 0.21 -25.68 15 8 H 0.08 3.89 7.91 -2.91 -0.02 3.86 15 9 C 0.09 4.76 5.58 -21.29 -0.12 4.64 15 10 C -0.19 -9.64 8.70 22.73 0.20 -9.44 15 11 C -0.07 -2.95 9.64 22.22 0.21 -2.74 15 12 C -0.27 -10.81 5.07 -19.67 -0.10 -10.91 15 13 C 0.12 3.72 3.77 29.85 0.11 3.83 15 14 H 0.14 3.41 7.87 -2.38 -0.02 3.39 15 15 F -0.22 -7.88 16.89 44.97 0.76 -7.12 15 16 C 0.24 6.98 5.08 71.98 0.37 7.35 15 17 F -0.21 -5.96 17.32 44.97 0.78 -5.18 15 18 F -0.21 -7.26 15.03 44.97 0.68 -6.58 15 19 C -0.06 -2.65 8.67 22.22 0.19 -2.46 15 20 C -0.25 -12.33 9.80 22.73 0.22 -12.11 15 21 H 0.29 12.84 8.30 -92.71 -0.77 12.07 15 22 H 0.11 5.58 6.15 -2.91 -0.02 5.56 15 23 H 0.13 4.31 7.94 -2.91 -0.02 4.29 15 24 H 0.16 3.52 8.14 -2.39 -0.02 3.50 15 25 H 0.11 4.48 6.78 -2.91 -0.02 4.46 15 26 H 0.10 4.54 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -57.36 242.74 7.43 -49.94 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.21 Total: 15.53 kcal Atomic # 6 Polarization: -46.93 SS G_CDS: 1.74 Total: -45.20 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.24 Total: -39.86 kcal Atomic # 9 Polarization: -21.10 SS G_CDS: 2.21 Total: -18.89 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -57.36 7.43 -49.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190048.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.596 kcal (2) G-P(sol) polarization free energy of solvation -57.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds