Wall clock time and date at job start Mon Mar 30 2020 02:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48501 * 109.47529 * 239.99492 * 3 2 1 5 5 H 1.48506 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47379 * 119.99416 * 3 2 1 7 7 C 1.39947 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00544 * 197.70790 * 7 2 1 9 9 C 1.41403 * 119.99783 * 17.70402 * 7 2 1 10 10 C 1.40711 * 120.24606 * 204.27786 * 9 7 2 11 11 C 1.37613 * 119.74614 * 179.70288 * 10 9 7 12 12 C 1.38636 * 120.24993 * 0.26968 * 11 10 9 13 13 C 1.50693 * 119.75220 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47259 * 355.00069 * 13 12 11 15 15 F 1.39903 * 109.47552 * 235.00461 * 13 12 11 16 16 C 1.52996 * 109.47389 * 115.00177 * 13 12 11 17 17 F 1.39904 * 109.47205 * 64.99841 * 16 13 12 18 18 F 1.39897 * 109.47489 * 185.00475 * 16 13 12 19 19 C 1.38637 * 120.49865 * 0.02562 * 12 11 10 20 20 C 1.37615 * 120.24880 * 0.02562 * 19 12 11 21 21 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 22 22 H 1.08006 * 120.12671 * 359.97073 * 10 9 7 23 23 H 1.08001 * 119.87504 * 180.29566 * 11 10 9 24 24 H 1.09001 * 109.46932 * 304.99997 * 16 13 12 25 25 H 1.07998 * 119.87316 * 179.97438 * 19 12 11 26 26 H 1.07999 * 120.13114 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0496 -1.2340 0.2850 9 6 1.3512 -2.4077 -0.3713 10 6 1.8273 -3.6499 0.0872 11 6 1.1766 -4.8068 -0.2761 12 6 0.0593 -4.7520 -1.0951 13 6 -0.6450 -6.0257 -1.4855 14 1 -0.0855 -6.8810 -1.1067 15 9 -0.7289 -6.1038 -2.8798 16 6 -2.0537 -6.0331 -0.8886 17 9 -2.8079 -5.0029 -1.4606 18 9 -2.6663 -7.2625 -1.1542 19 6 -0.4149 -3.5341 -1.5577 20 6 0.2206 -2.3647 -1.2080 21 1 -0.4850 0.8400 -0.0004 22 1 2.6975 -3.6950 0.7253 23 1 1.5373 -5.7610 0.0785 24 1 -1.9924 -5.8832 0.1893 25 1 -1.2859 -3.5032 -2.1955 26 1 -0.1502 -1.4170 -1.5698 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261190049.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:15 Heat of formation + Delta-G solvation = -147.087355 kcal Electronic energy + Delta-G solvation = -15602.846982 eV Core-core repulsion = 12423.655439 eV Total energy + Delta-G solvation = -3179.191543 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.86199 -46.97746 -46.64747 -37.67742 -34.10467 -31.55678 -29.47797 -28.51050 -25.26021 -22.54894 -21.24588 -20.16509 -17.51243 -17.33620 -17.09431 -16.61863 -15.56956 -15.05947 -14.96832 -14.07398 -13.55485 -13.45856 -13.22587 -13.11048 -12.88857 -12.37355 -12.04368 -11.86881 -11.57371 -11.22601 -11.11941 -10.87599 -10.45613 -10.25090 -9.74670 -9.48851 -9.29491 -7.64122 -7.56794 -6.92848 -4.54471 2.53089 2.93246 2.98854 3.00234 3.06874 3.81149 3.98838 4.41501 4.48878 4.76380 4.84117 5.31830 5.54244 5.64207 5.96327 6.10667 6.30468 6.82510 6.90755 7.09277 7.17203 7.44940 7.62184 7.88448 7.89645 8.11828 8.47584 8.71653 8.79236 10.00890 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.050867 B = 0.006670 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.322325 B = 4196.795718 C = 4455.708703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.120 3.880 10 C -0.231 4.231 11 C -0.063 4.063 12 C -0.281 4.281 13 C 0.120 3.880 14 H 0.099 0.901 15 F -0.204 7.204 16 C 0.241 3.759 17 F -0.193 7.193 18 F -0.212 7.212 19 C -0.068 4.068 20 C -0.170 4.170 21 H 0.285 0.715 22 H 0.096 0.904 23 H 0.092 0.908 24 H 0.123 0.877 25 H 0.097 0.903 26 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -5.327 0.375 5.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.118 3.882 10 C -0.251 4.251 11 C -0.082 4.082 12 C -0.283 4.283 13 C 0.084 3.916 14 H 0.117 0.883 15 F -0.185 7.185 16 C 0.186 3.814 17 F -0.175 7.175 18 F -0.193 7.193 19 C -0.087 4.087 20 C -0.189 4.189 21 H 0.096 0.904 22 H 0.115 0.885 23 H 0.110 0.890 24 H 0.140 0.860 25 H 0.115 0.885 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.475 -5.164 0.339 5.381 hybrid contribution 0.165 0.740 -0.054 0.760 sum -1.310 -4.424 0.284 4.623 Atomic orbital electron populations 1.69807 1.07719 1.29839 1.33277 1.25991 0.94779 1.01632 0.92026 0.86305 0.80164 0.79822 0.80150 1.18633 1.20161 1.18840 1.19678 0.98216 0.91233 1.39204 0.90089 1.17721 0.90742 0.92114 0.87654 1.20922 1.03947 0.92672 1.07551 1.20298 0.94347 0.96859 0.96662 1.18924 1.03746 0.91914 1.13695 1.21117 0.93336 1.00458 0.76728 0.88277 1.92836 1.97141 1.97680 1.30826 1.22829 0.87632 0.71258 0.99634 1.92972 1.78203 1.58984 1.87317 1.92956 1.85335 1.45116 1.95919 1.20593 0.97966 0.92240 0.97852 1.21309 0.99424 0.96793 1.01385 0.90416 0.88542 0.88999 0.85954 0.88466 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.49 10.96 55.55 0.61 -18.88 15 2 C 0.08 1.81 5.14 -17.34 -0.09 1.73 15 3 Si 0.91 17.87 29.59 -169.99 -5.03 12.84 15 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 15 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 7 C -0.45 -11.55 9.05 -37.74 -0.34 -11.89 15 8 H 0.08 1.96 7.91 -52.49 -0.41 1.54 15 9 C 0.12 3.09 5.57 -106.82 -0.60 2.50 15 10 C -0.23 -5.37 9.80 -38.88 -0.38 -5.75 15 11 C -0.06 -1.32 9.64 -39.66 -0.38 -1.70 15 12 C -0.28 -5.91 5.07 -104.33 -0.53 -6.44 15 13 C 0.12 2.13 3.75 -27.89 -0.10 2.03 15 14 H 0.10 1.46 7.87 -51.93 -0.41 1.05 15 15 F -0.20 -4.04 16.85 2.25 0.04 -4.00 15 16 C 0.24 3.93 5.03 37.16 0.19 4.12 15 17 F -0.19 -3.66 15.23 2.25 0.03 -3.63 15 18 F -0.21 -3.41 17.34 2.25 0.04 -3.37 15 19 C -0.07 -1.59 8.80 -39.66 -0.35 -1.93 15 20 C -0.17 -4.33 8.70 -38.87 -0.34 -4.66 15 21 H 0.28 6.45 8.30 -40.82 -0.34 6.11 15 22 H 0.10 2.08 8.06 -52.48 -0.42 1.66 15 23 H 0.09 1.59 7.94 -52.49 -0.42 1.17 15 24 H 0.12 1.68 8.14 -51.93 -0.42 1.26 15 25 H 0.10 2.20 6.82 -52.49 -0.36 1.84 15 26 H 0.12 3.16 6.17 -52.49 -0.32 2.84 15 LS Contribution 243.04 15.07 3.66 3.66 Total: -1.00 -26.74 243.04 -5.47 -32.22 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -1.90 Total: 3.18 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -2.92 Total: -22.02 kcal Atomic # 7 Polarization: -19.49 SS G_CDS: 0.61 Total: -18.88 kcal Atomic # 9 Polarization: -11.11 SS G_CDS: 0.11 Total: -10.99 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -26.74 -5.47 -32.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190049.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.872 kcal (2) G-P(sol) polarization free energy of solvation -26.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds