Wall clock time and date at job start Mon Mar 30 2020 02:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48501 * 109.47529 * 239.99492 * 3 2 1 5 5 H 1.48506 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47379 * 119.99416 * 3 2 1 7 7 C 1.39947 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00544 * 197.70790 * 7 2 1 9 9 C 1.41403 * 119.99783 * 17.70402 * 7 2 1 10 10 C 1.40711 * 120.24606 * 204.27786 * 9 7 2 11 11 C 1.37613 * 119.74614 * 179.70288 * 10 9 7 12 12 C 1.38636 * 120.24993 * 0.26968 * 11 10 9 13 13 C 1.50693 * 119.75220 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47259 * 355.00069 * 13 12 11 15 15 F 1.39903 * 109.47552 * 235.00461 * 13 12 11 16 16 C 1.52996 * 109.47389 * 115.00177 * 13 12 11 17 17 F 1.39904 * 109.47205 * 64.99841 * 16 13 12 18 18 F 1.39897 * 109.47489 * 185.00475 * 16 13 12 19 19 C 1.38637 * 120.49865 * 0.02562 * 12 11 10 20 20 C 1.37615 * 120.24880 * 0.02562 * 19 12 11 21 21 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 22 22 H 1.08006 * 120.12671 * 359.97073 * 10 9 7 23 23 H 1.08001 * 119.87504 * 180.29566 * 11 10 9 24 24 H 1.09001 * 109.46932 * 304.99997 * 16 13 12 25 25 H 1.07998 * 119.87316 * 179.97438 * 19 12 11 26 26 H 1.07999 * 120.13114 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0496 -1.2340 0.2850 9 6 1.3512 -2.4077 -0.3713 10 6 1.8273 -3.6499 0.0872 11 6 1.1766 -4.8068 -0.2761 12 6 0.0593 -4.7520 -1.0951 13 6 -0.6450 -6.0257 -1.4855 14 1 -0.0855 -6.8810 -1.1067 15 9 -0.7289 -6.1038 -2.8798 16 6 -2.0537 -6.0331 -0.8886 17 9 -2.8079 -5.0029 -1.4606 18 9 -2.6663 -7.2625 -1.1542 19 6 -0.4149 -3.5341 -1.5577 20 6 0.2206 -2.3647 -1.2080 21 1 -0.4850 0.8400 -0.0004 22 1 2.6975 -3.6950 0.7253 23 1 1.5373 -5.7610 0.0785 24 1 -1.9924 -5.8832 0.1893 25 1 -1.2859 -3.5032 -2.1955 26 1 -0.1502 -1.4170 -1.5698 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261190049.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:15 Heat of formation + Delta-G solvation = -160.231929 kcal Electronic energy + Delta-G solvation = -15603.416974 eV Core-core repulsion = 12423.655439 eV Total energy + Delta-G solvation = -3179.761535 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.21320 -48.43866 -48.00411 -39.45494 -35.87153 -33.21088 -31.27881 -30.14531 -26.95659 -24.06725 -23.03748 -21.84164 -19.29791 -18.70700 -18.49215 -18.02845 -17.26464 -16.63483 -16.46463 -15.76648 -15.03027 -14.93698 -14.86132 -14.64317 -14.38376 -14.00310 -13.78127 -13.42080 -13.20830 -12.86952 -12.73555 -12.53441 -12.03402 -11.73066 -11.46584 -11.22774 -11.07357 -9.46164 -9.37751 -8.71051 -6.42944 0.79039 1.10894 1.37807 1.47948 1.51253 2.17608 2.53899 2.78089 3.18289 3.40965 3.51809 3.70719 3.94630 4.24159 4.41448 4.51252 4.63996 5.01606 5.09664 5.28823 5.35918 5.63804 5.82634 6.04564 6.07354 6.29720 6.63147 6.86395 6.94996 8.25243 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.050867 B = 0.006670 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.322325 B = 4196.795718 C = 4455.708703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.492 4.492 8 H 0.083 0.917 9 C 0.089 3.911 10 C -0.245 4.245 11 C -0.056 4.056 12 C -0.271 4.271 13 C 0.117 3.883 14 H 0.143 0.857 15 F -0.217 7.217 16 C 0.240 3.760 17 F -0.213 7.213 18 F -0.208 7.208 19 C -0.077 4.077 20 C -0.197 4.197 21 H 0.290 0.710 22 H 0.108 0.892 23 H 0.139 0.861 24 H 0.155 0.845 25 H 0.096 0.904 26 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 -6.593 0.984 6.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.521 4.521 8 H 0.101 0.899 9 C 0.087 3.913 10 C -0.264 4.264 11 C -0.074 4.074 12 C -0.273 4.273 13 C 0.081 3.919 14 H 0.160 0.840 15 F -0.198 7.198 16 C 0.187 3.813 17 F -0.194 7.194 18 F -0.189 7.189 19 C -0.095 4.095 20 C -0.217 4.217 21 H 0.101 0.899 22 H 0.126 0.874 23 H 0.157 0.843 24 H 0.172 0.828 25 H 0.114 0.886 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.953 -6.451 0.947 6.590 hybrid contribution -0.044 0.970 -0.271 1.008 sum -0.997 -5.481 0.676 5.612 Atomic orbital electron populations 1.69867 1.09180 1.30978 1.34230 1.26831 0.95458 1.04779 0.91026 0.85228 0.78792 0.75403 0.80210 1.18559 1.19289 1.17955 1.19954 0.98595 0.92398 1.41137 0.89922 1.18079 0.91309 0.93585 0.88358 1.21198 1.04659 0.92751 1.07842 1.20729 0.93283 0.98034 0.95319 1.19275 1.03424 0.92495 1.12092 1.21376 0.94480 1.00021 0.76029 0.83981 1.92812 1.97260 1.97654 1.32073 1.23019 0.86497 0.70823 1.00996 1.92942 1.78680 1.60003 1.87773 1.92965 1.85152 1.44761 1.96028 1.20724 0.97900 0.92862 0.98016 1.21238 1.00674 0.96819 1.02957 0.89877 0.87369 0.84306 0.82769 0.88578 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.04 10.96 21.83 0.24 -41.80 15 2 C 0.04 1.73 5.14 85.26 0.44 2.17 15 3 Si 0.98 36.98 29.59 68.60 2.03 39.01 15 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 5 H -0.27 -9.61 7.11 99.48 0.71 -8.91 15 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 7 C -0.49 -25.64 9.05 23.46 0.21 -25.43 15 8 H 0.08 4.09 7.91 -2.91 -0.02 4.06 15 9 C 0.09 4.67 5.57 -21.29 -0.12 4.55 15 10 C -0.25 -11.12 9.80 22.73 0.22 -10.90 15 11 C -0.06 -2.14 9.64 22.22 0.21 -1.93 15 12 C -0.27 -10.78 5.07 -19.68 -0.10 -10.88 15 13 C 0.12 3.74 3.75 29.84 0.11 3.85 15 14 H 0.14 3.37 7.87 -2.39 -0.02 3.35 15 15 F -0.22 -8.07 16.85 44.97 0.76 -7.31 15 16 C 0.24 7.11 5.03 71.98 0.36 7.47 15 17 F -0.21 -7.75 15.23 44.97 0.68 -7.06 15 18 F -0.21 -6.01 17.34 44.97 0.78 -5.23 15 19 C -0.08 -3.58 8.80 22.22 0.20 -3.38 15 20 C -0.20 -10.37 8.70 22.73 0.20 -10.17 15 21 H 0.29 13.53 8.30 -92.71 -0.77 12.76 15 22 H 0.11 4.54 8.06 -2.91 -0.02 4.51 15 23 H 0.14 4.03 7.94 -2.91 -0.02 4.01 15 24 H 0.16 3.62 8.14 -2.39 -0.02 3.60 15 25 H 0.10 4.41 6.82 -2.91 -0.02 4.39 15 26 H 0.10 5.48 6.17 -2.91 -0.02 5.46 15 Total: -1.00 -58.69 243.04 7.43 -51.26 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.21 Total: 15.79 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 1.74 Total: -44.65 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.24 Total: -41.80 kcal Atomic # 9 Polarization: -21.82 SS G_CDS: 2.22 Total: -19.60 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -58.69 7.43 -51.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190049.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.975 kcal (2) G-P(sol) polarization free energy of solvation -58.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds