Wall clock time and date at job start Mon Mar 30 2020 02:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99595 * 2 1 4 4 H 1.48498 * 109.47207 * 240.00035 * 3 2 1 5 5 H 1.48491 * 109.47132 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46798 * 120.00307 * 3 2 1 7 7 C 1.37871 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00158 * 0.02562 * 7 2 1 10 10 C 1.50694 * 109.47356 * 179.97438 * 9 7 2 11 11 C 1.38272 * 119.97573 * 265.00259 * 10 9 7 12 12 C 1.38174 * 120.02453 * 180.27919 * 11 10 9 13 13 C 1.38478 * 119.97380 * 359.46539 * 12 11 10 14 14 F 1.35104 * 120.02403 * 180.27913 * 13 12 11 15 15 C 1.38434 * 119.94983 * 0.55236 * 13 12 11 16 16 C 1.38221 * 119.97503 * 359.70566 * 15 13 12 17 17 C 1.50700 * 119.98621 * 180.02562 * 16 15 13 18 18 F 1.39899 * 109.47282 * 30.02146 * 17 16 15 19 19 F 1.39898 * 109.46812 * 150.02235 * 17 16 15 20 20 H 0.96998 * 120.00321 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47074 * 59.99676 * 9 7 2 22 22 H 1.09003 * 109.47062 * 300.00005 * 9 7 2 23 23 H 1.08002 * 119.98328 * 359.97438 * 11 10 9 24 24 H 1.08004 * 120.00923 * 179.70379 * 12 11 10 25 25 H 1.08000 * 120.01345 * 179.72756 * 15 13 12 26 26 H 1.09000 * 109.47049 * 270.01984 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2305 -3.6445 -0.0027 11 6 2.6002 -4.2363 -1.1965 12 6 3.4936 -5.2903 -1.1981 13 6 4.0273 -5.7467 -0.0046 14 9 4.9053 -6.7735 -0.0055 15 6 3.6562 -5.1537 1.1900 16 6 2.7582 -4.1029 1.1897 17 6 2.3545 -3.4568 2.4899 18 9 3.4095 -3.5495 3.4041 19 9 2.0484 -2.1102 2.2661 20 1 -0.4850 0.8400 0.0004 21 1 0.6249 -2.5563 -0.8919 22 1 0.6242 -2.5575 0.8880 23 1 2.1866 -3.8777 -2.1275 24 1 3.7785 -5.7555 -2.1302 25 1 4.0685 -5.5117 2.1218 26 1 1.4791 -3.9664 2.8924 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306548252.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:26 Heat of formation + Delta-G solvation = -124.439561 kcal Electronic energy + Delta-G solvation = -15897.167250 eV Core-core repulsion = 12718.957788 eV Total energy + Delta-G solvation = -3178.209461 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.58628 -48.28046 -46.22459 -38.75310 -33.40806 -31.64560 -31.07650 -27.30134 -25.48621 -23.30664 -21.84698 -20.54807 -17.50297 -16.96964 -16.68700 -16.26159 -15.44028 -15.29602 -15.27011 -15.01790 -14.24478 -13.39140 -13.28643 -12.87057 -12.60222 -12.55807 -12.20777 -11.94337 -11.31713 -11.30060 -11.02253 -10.65216 -10.58465 -10.03790 -9.64249 -9.50473 -8.75883 -8.39429 -7.96277 -6.03154 -4.02892 1.41870 1.61590 3.34324 3.37996 3.42097 3.89534 4.23922 4.47418 4.58203 4.78065 5.06929 5.24863 5.32627 5.46489 5.61283 5.66961 5.81102 6.11116 6.35535 6.50698 6.73692 6.77582 7.24834 7.44323 7.58946 7.90330 8.25610 8.95012 9.57393 11.07452 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.009108 C = 0.007972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.136207 B = 3073.501499 C = 3511.362346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.493 4.493 8 H 0.055 0.945 9 C 0.043 3.957 10 C -0.011 4.011 11 C -0.100 4.100 12 C -0.137 4.137 13 C 0.061 3.939 14 F -0.149 7.149 15 C -0.123 4.123 16 C -0.150 4.150 17 C 0.308 3.692 18 F -0.214 7.214 19 F -0.151 7.151 20 H 0.262 0.738 21 H 0.030 0.970 22 H 0.041 0.959 23 H 0.136 0.864 24 H 0.130 0.870 25 H 0.133 0.867 26 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.833 -9.224 1.443 10.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.006 3.994 10 C -0.012 4.012 11 C -0.118 4.118 12 C -0.155 4.155 13 C 0.042 3.958 14 F -0.127 7.127 15 C -0.142 4.142 16 C -0.151 4.151 17 C 0.255 3.745 18 F -0.195 7.195 19 F -0.131 7.131 20 H 0.071 0.929 21 H 0.048 0.952 22 H 0.059 0.941 23 H 0.154 0.846 24 H 0.148 0.852 25 H 0.151 0.849 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.726 -9.101 1.466 9.943 hybrid contribution 0.774 0.785 0.024 1.103 sum 4.500 -8.317 1.489 9.573 Atomic orbital electron populations 1.69923 1.05940 1.26845 1.50732 1.24881 0.94812 0.98966 0.95276 0.86639 0.79595 0.83014 0.78729 1.20295 1.21289 1.20108 1.20801 0.92721 0.89314 1.50244 0.92710 1.18635 0.92389 0.89266 0.99071 1.20671 0.95278 0.94590 0.90630 1.21003 0.97269 0.94776 0.98727 1.21183 0.98972 0.98707 0.96682 1.17409 0.94253 0.89571 0.94578 1.91445 1.67020 1.56835 1.97437 1.20735 0.98861 0.97145 0.97437 1.20193 1.00987 0.98304 0.95575 1.20164 0.87113 0.82068 0.85202 1.92931 1.61239 1.96435 1.68905 1.93353 1.92664 1.32778 1.94328 0.92861 0.95189 0.94121 0.84638 0.85209 0.84874 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 13.29 55.43 0.74 -24.96 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 7 C -0.49 -13.23 6.77 -34.44 -0.23 -13.47 15 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.04 1.03 4.36 -29.04 -0.13 0.90 15 10 C -0.01 -0.23 5.06 -104.62 -0.53 -0.76 15 11 C -0.10 -1.75 9.68 -39.59 -0.38 -2.14 15 12 C -0.14 -2.14 10.03 -39.52 -0.40 -2.53 15 13 C 0.06 0.99 7.30 -39.42 -0.29 0.70 15 14 F -0.15 -2.34 17.27 2.25 0.04 -2.30 15 15 C -0.12 -2.04 9.38 -39.52 -0.37 -2.41 15 16 C -0.15 -2.78 5.73 -104.63 -0.60 -3.38 15 17 C 0.31 5.58 5.20 36.01 0.19 5.77 15 18 F -0.21 -3.80 16.48 2.25 0.04 -3.76 15 19 F -0.15 -3.43 12.15 2.25 0.03 -3.40 15 20 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 21 H 0.03 0.75 8.05 -51.93 -0.42 0.33 15 22 H 0.04 1.02 6.41 -51.93 -0.33 0.68 15 23 H 0.14 2.21 8.06 -52.49 -0.42 1.79 15 24 H 0.13 1.66 8.06 -52.48 -0.42 1.24 15 25 H 0.13 1.96 7.60 -52.49 -0.40 1.57 15 26 H 0.11 1.56 8.14 -51.93 -0.42 1.14 15 LS Contribution 241.38 15.07 3.64 3.64 Total: -1.00 -28.85 241.38 -5.34 -34.19 By element: Atomic # 1 Polarization: -2.22 SS G_CDS: -1.96 Total: -4.18 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -2.84 Total: -15.70 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.74 Total: -24.96 kcal Atomic # 9 Polarization: -9.57 SS G_CDS: 0.10 Total: -9.46 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.85 -5.34 -34.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306548252.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.254 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds