Wall clock time and date at job start Mon Mar 30 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99612 * 2 1 4 4 H 1.48502 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47062 * 299.99760 * 3 2 1 6 6 H 1.48503 * 109.47215 * 60.00012 * 3 2 1 7 7 C 1.37875 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99788 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47108 * 179.97438 * 9 7 2 11 11 C 1.38227 * 120.01020 * 100.00488 * 10 9 7 12 12 C 1.38219 * 120.02402 * 180.30126 * 11 10 9 13 13 C 1.38271 * 120.05287 * 359.44048 * 12 11 10 14 14 C 1.50698 * 119.99018 * 180.27975 * 13 12 11 15 15 F 1.39901 * 109.47080 * 120.27280 * 14 13 12 16 16 F 1.39900 * 109.47159 * 240.27869 * 14 13 12 17 17 C 1.38173 * 120.02098 * 0.55595 * 13 12 11 18 18 C 1.38435 * 120.01579 * 280.02454 * 10 9 7 19 19 F 1.35097 * 120.02386 * 359.97438 * 18 10 9 20 20 H 0.96994 * 120.00343 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47125 * 59.99965 * 9 7 2 22 22 H 1.08996 * 109.47470 * 300.00326 * 9 7 2 23 23 H 1.08002 * 119.98464 * 0.02562 * 11 10 9 24 24 H 1.08000 * 119.97200 * 179.72235 * 12 11 10 25 25 H 1.08999 * 109.47092 * 0.28029 * 14 13 12 26 26 H 1.08004 * 120.01046 * 179.74457 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2305 -3.6445 0.0015 11 6 2.5227 -4.3045 1.1803 12 6 3.4256 -5.3510 1.1815 13 6 4.0289 -5.7465 0.0018 14 6 5.0084 -6.8917 0.0037 15 9 4.5438 -7.9040 -0.8428 16 9 6.2536 -6.4412 -0.4476 17 6 3.7383 -5.0881 -1.1777 18 6 2.8383 -4.0357 -1.1792 19 9 2.5534 -3.3914 -2.3320 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5575 -0.8880 22 1 0.6248 -2.5563 0.8919 23 1 2.0486 -3.9995 2.1015 24 1 3.6566 -5.8633 2.1038 25 1 5.1085 -7.2825 1.0163 26 1 4.2128 -5.3945 -2.0984 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307273063.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:54 Heat of formation + Delta-G solvation = -138.063499 kcal Electronic energy + Delta-G solvation = -15344.464168 eV Core-core repulsion = 12165.663929 eV Total energy + Delta-G solvation = -3178.800240 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.93318 -48.16663 -46.92250 -38.74084 -33.83893 -31.91753 -30.27577 -28.38254 -25.34167 -22.87754 -22.45713 -20.61119 -17.65858 -17.35279 -17.15820 -16.46064 -15.64288 -15.45265 -15.13342 -14.82934 -14.29271 -13.85585 -13.51620 -13.30721 -12.78231 -12.50693 -12.45598 -11.97359 -11.74607 -11.52708 -11.15856 -10.92190 -10.61386 -10.52191 -9.75736 -9.59607 -8.55088 -8.50480 -8.10422 -6.12384 -4.16853 1.41839 1.55870 3.26127 3.33786 3.38781 3.76690 3.88095 4.19085 4.39533 4.50905 4.96799 5.10025 5.17551 5.25000 5.27516 5.60962 5.75313 6.06532 6.31761 6.47241 6.64824 6.74258 7.25852 7.41432 7.52735 7.81856 8.16970 8.86620 9.47549 10.97894 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.043652 B = 0.006351 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.288536 B = 4407.938285 C = 4443.998069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.046 3.954 10 C -0.046 4.046 11 C -0.104 4.104 12 C -0.098 4.098 13 C -0.177 4.177 14 C 0.319 3.681 15 F -0.204 7.204 16 F -0.203 7.203 17 C -0.120 4.120 18 C 0.095 3.905 19 F -0.129 7.129 20 H 0.263 0.737 21 H 0.037 0.963 22 H 0.036 0.964 23 H 0.136 0.864 24 H 0.127 0.873 25 H 0.117 0.883 26 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.147 -11.952 2.252 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.009 3.991 10 C -0.047 4.047 11 C -0.122 4.122 12 C -0.117 4.117 13 C -0.178 4.178 14 C 0.265 3.735 15 F -0.185 7.185 16 F -0.184 7.184 17 C -0.139 4.139 18 C 0.076 3.924 19 F -0.108 7.108 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.154 0.846 24 H 0.145 0.855 25 H 0.134 0.866 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.006 -11.824 2.168 13.914 hybrid contribution 0.458 1.041 -0.370 1.196 sum 7.464 -10.783 1.798 13.237 Atomic orbital electron populations 1.69951 1.06055 1.26945 1.50080 1.24981 0.94908 0.99334 0.94859 0.86438 0.80137 0.83215 0.77706 1.19602 1.20799 1.20836 1.20991 0.93003 0.89553 1.51679 0.92399 1.18399 0.92412 0.89090 0.99205 1.21026 0.96579 0.96130 0.90932 1.20985 0.98003 0.95071 0.98114 1.20857 0.96833 0.97618 0.96360 1.19848 1.02795 1.00194 0.94988 1.20339 0.77851 0.83400 0.91892 1.92997 1.88896 1.61797 1.74789 1.93003 1.44087 1.89932 1.91375 1.20777 0.98520 0.95972 0.98597 1.17490 0.98612 0.93545 0.82792 1.91502 1.92175 1.80382 1.46718 0.92725 0.94488 0.94529 0.84637 0.85493 0.86566 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.28 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.51 -14.26 9.09 -34.44 -0.31 -14.57 15 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 15 9 C 0.05 1.15 4.83 -29.04 -0.14 1.01 15 10 C -0.05 -0.96 5.08 -104.55 -0.53 -1.49 15 11 C -0.10 -1.78 9.67 -39.59 -0.38 -2.16 15 12 C -0.10 -1.38 9.67 -39.58 -0.38 -1.76 15 13 C -0.18 -2.62 5.37 -104.63 -0.56 -3.18 15 14 C 0.32 3.84 5.45 36.00 0.20 4.04 15 15 F -0.20 -2.72 17.26 2.25 0.04 -2.68 15 16 F -0.20 -2.79 17.26 2.25 0.04 -2.75 15 17 C -0.12 -2.05 9.58 -39.52 -0.38 -2.43 15 18 C 0.09 1.93 7.24 -39.42 -0.29 1.65 15 19 F -0.13 -2.86 16.66 2.25 0.04 -2.83 15 20 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 21 H 0.04 1.01 7.95 -51.93 -0.41 0.59 15 22 H 0.04 0.93 8.00 -51.93 -0.42 0.52 15 23 H 0.14 2.12 8.04 -52.49 -0.42 1.70 15 24 H 0.13 1.27 7.94 -52.49 -0.42 0.85 15 25 H 0.12 0.93 7.88 -51.93 -0.41 0.52 15 26 H 0.13 2.03 8.06 -52.48 -0.42 1.61 15 LS Contribution 250.66 15.07 3.78 3.78 Total: -1.00 -29.95 250.66 -5.31 -35.26 By element: Atomic # 1 Polarization: -2.59 SS G_CDS: -2.04 Total: -4.63 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.88 Total: -17.29 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.74 Total: -25.28 kcal Atomic # 9 Polarization: -8.37 SS G_CDS: 0.12 Total: -8.25 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.95 -5.31 -35.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307273063.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.803 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds