Wall clock time and date at job start Mon Mar 30 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99612 * 2 1 4 4 H 1.48502 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47062 * 299.99760 * 3 2 1 6 6 H 1.48503 * 109.47215 * 60.00012 * 3 2 1 7 7 C 1.37875 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99788 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47108 * 179.97438 * 9 7 2 11 11 C 1.38227 * 120.01020 * 100.00488 * 10 9 7 12 12 C 1.38219 * 120.02402 * 180.30126 * 11 10 9 13 13 C 1.38271 * 120.05287 * 359.44048 * 12 11 10 14 14 C 1.50698 * 119.99018 * 180.27975 * 13 12 11 15 15 F 1.39901 * 109.47080 * 120.27280 * 14 13 12 16 16 F 1.39900 * 109.47159 * 240.27869 * 14 13 12 17 17 C 1.38173 * 120.02098 * 0.55595 * 13 12 11 18 18 C 1.38435 * 120.01579 * 280.02454 * 10 9 7 19 19 F 1.35097 * 120.02386 * 359.97438 * 18 10 9 20 20 H 0.96994 * 120.00343 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47125 * 59.99965 * 9 7 2 22 22 H 1.08996 * 109.47470 * 300.00326 * 9 7 2 23 23 H 1.08002 * 119.98464 * 0.02562 * 11 10 9 24 24 H 1.08000 * 119.97200 * 179.72235 * 12 11 10 25 25 H 1.08999 * 109.47092 * 0.28029 * 14 13 12 26 26 H 1.08004 * 120.01046 * 179.74457 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2305 -3.6445 0.0015 11 6 2.5227 -4.3045 1.1803 12 6 3.4256 -5.3510 1.1815 13 6 4.0289 -5.7465 0.0018 14 6 5.0084 -6.8917 0.0037 15 9 4.5438 -7.9040 -0.8428 16 9 6.2536 -6.4412 -0.4476 17 6 3.7383 -5.0881 -1.1777 18 6 2.8383 -4.0357 -1.1792 19 9 2.5534 -3.3914 -2.3320 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5575 -0.8880 22 1 0.6248 -2.5563 0.8919 23 1 2.0486 -3.9995 2.1015 24 1 3.6566 -5.8633 2.1038 25 1 5.1085 -7.2825 1.0163 26 1 4.2128 -5.3945 -2.0984 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307273063.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:54 Heat of formation + Delta-G solvation = -154.876042 kcal Electronic energy + Delta-G solvation = -15345.193215 eV Core-core repulsion = 12165.663929 eV Total energy + Delta-G solvation = -3179.529286 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.91202 -49.78930 -47.91062 -40.10587 -35.71382 -33.66090 -31.61402 -30.04158 -26.89602 -24.57956 -23.79492 -22.07512 -18.91309 -18.63819 -18.38129 -18.13050 -17.04018 -16.88975 -16.68058 -16.50178 -15.96502 -14.85570 -14.79692 -14.48755 -14.29763 -14.26658 -13.85764 -13.54102 -13.35806 -13.07963 -12.74786 -12.54036 -12.31310 -12.06430 -11.62817 -11.49287 -10.66088 -9.93594 -9.61402 -8.26309 -6.39228 0.06029 0.20385 1.36771 1.38121 1.51004 2.34206 2.55040 2.75660 3.05882 3.22894 3.41610 3.68725 3.99506 4.11229 4.13813 4.15470 4.42135 4.72458 4.91237 5.11456 5.22649 5.24316 5.28888 5.65391 5.67935 5.86502 6.08558 6.71458 7.29490 8.84136 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.043652 B = 0.006351 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.288536 B = 4407.938285 C = 4443.998069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.055 3.945 10 C -0.081 4.081 11 C -0.106 4.106 12 C -0.072 4.072 13 C -0.170 4.170 14 C 0.320 3.680 15 F -0.211 7.211 16 F -0.213 7.213 17 C -0.122 4.122 18 C 0.062 3.938 19 F -0.153 7.153 20 H 0.267 0.733 21 H -0.001 1.001 22 H 0.023 0.977 23 H 0.149 0.851 24 H 0.186 0.814 25 H 0.176 0.824 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.160 -13.321 3.990 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.070 0.930 9 C 0.018 3.982 10 C -0.082 4.082 11 C -0.124 4.124 12 C -0.089 4.089 13 C -0.171 4.171 14 C 0.268 3.732 15 F -0.193 7.193 16 F -0.194 7.194 17 C -0.141 4.141 18 C 0.043 3.957 19 F -0.132 7.132 20 H 0.076 0.924 21 H 0.017 0.983 22 H 0.041 0.959 23 H 0.167 0.833 24 H 0.203 0.797 25 H 0.192 0.808 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.025 -13.207 3.906 16.466 hybrid contribution -0.150 1.355 -0.896 1.632 sum 8.874 -11.851 3.011 15.108 Atomic orbital electron populations 1.70063 1.07595 1.28064 1.50947 1.25886 0.95791 1.03067 0.94345 0.85390 0.78860 0.78684 0.78098 1.19063 1.20439 1.19517 1.21300 0.92897 0.91135 1.51491 0.93003 1.18081 0.92835 0.90673 0.96632 1.20774 0.97639 0.96593 0.93157 1.21207 0.98635 0.95563 0.96952 1.21370 0.93829 0.95506 0.98239 1.20381 1.02358 1.00183 0.94170 1.20802 0.76248 0.81995 0.94202 1.92990 1.88979 1.61848 1.75456 1.92992 1.44589 1.90099 1.91730 1.20973 0.97627 0.95084 1.00428 1.17821 1.00614 0.95275 0.82024 1.91427 1.92665 1.81192 1.47897 0.92397 0.98268 0.95865 0.83350 0.79681 0.80751 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.29 21.45 0.28 -55.45 15 2 C 0.01 0.44 5.46 84.65 0.46 0.91 15 3 Si 0.97 44.52 29.54 68.60 2.03 46.54 15 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 7 C -0.53 -30.47 9.09 25.60 0.23 -30.23 15 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 15 9 C 0.05 2.91 4.83 29.10 0.14 3.06 15 10 C -0.08 -3.48 5.08 -19.82 -0.10 -3.58 15 11 C -0.11 -3.44 9.67 22.26 0.22 -3.22 15 12 C -0.07 -1.68 9.67 22.27 0.22 -1.47 15 13 C -0.17 -4.40 5.37 -19.87 -0.11 -4.50 15 14 C 0.32 6.14 5.45 71.24 0.39 6.53 15 15 F -0.21 -4.85 17.26 44.97 0.78 -4.07 15 16 F -0.21 -5.03 17.26 44.97 0.78 -4.26 15 17 C -0.12 -4.07 9.58 22.31 0.21 -3.85 15 18 C 0.06 2.58 7.24 22.37 0.16 2.74 15 19 F -0.15 -7.21 16.66 44.97 0.75 -6.46 15 20 H 0.27 14.98 8.31 -92.71 -0.77 14.21 15 21 H 0.00 -0.05 7.95 -2.39 -0.02 -0.07 15 22 H 0.02 1.25 8.00 -2.39 -0.02 1.23 15 23 H 0.15 4.36 8.04 -2.91 -0.02 4.34 15 24 H 0.19 2.26 7.94 -2.91 -0.02 2.24 15 25 H 0.18 1.48 7.88 -2.39 -0.02 1.46 15 26 H 0.14 4.25 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -68.68 250.66 7.64 -61.05 By element: Atomic # 1 Polarization: -4.92 SS G_CDS: 1.20 Total: -3.72 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 1.82 Total: -33.63 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.28 Total: -55.45 kcal Atomic # 9 Polarization: -17.09 SS G_CDS: 2.30 Total: -14.79 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -68.68 7.64 -61.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307273063.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.831 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds