Wall clock time and date at job start Mon Mar 30 2020 02:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99675 * 2 1 4 4 H 1.48491 * 109.47154 * 240.00187 * 3 2 1 5 5 H 1.48504 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46853 * 120.00514 * 3 2 1 7 7 C 1.37875 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99705 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00148 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47308 * 180.02562 * 9 7 2 11 11 C 1.42891 * 114.00234 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47315 * 180.02562 * 11 10 9 13 13 S 1.81405 * 109.47193 * 180.02562 * 12 11 10 14 14 C 1.76205 * 102.99827 * 180.02562 * 13 12 11 15 15 N 1.33428 * 126.26617 * 359.97438 * 14 13 12 16 16 N 1.28573 * 109.88338 * 179.97438 * 15 14 13 17 17 N 1.28932 * 109.64881 * 0.02562 * 16 15 14 18 18 H 0.96999 * 126.47146 * 180.02562 * 17 16 15 19 19 N 1.31735 * 126.26070 * 179.97438 * 14 13 12 20 20 H 0.97001 * 119.99981 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46852 * 60.00258 * 9 7 2 22 22 H 1.09001 * 109.46963 * 300.00335 * 9 7 2 23 23 H 1.09002 * 109.47034 * 60.00464 * 11 10 9 24 24 H 1.08997 * 109.47629 * 300.00703 * 11 10 9 25 25 H 1.08999 * 109.47023 * 60.00663 * 12 11 10 26 26 H 1.09002 * 109.47454 * 300.00145 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5653 -4.8753 0.0000 12 6 2.6483 -5.9561 0.0006 13 16 1.8682 -7.5938 0.0006 14 6 3.2478 -8.6899 0.0021 15 7 4.5350 -8.3386 0.0025 16 7 5.2752 -9.3899 0.0042 17 7 4.5320 -10.4434 0.0043 18 1 4.8370 -11.3642 0.0058 19 7 3.1971 -10.0063 0.0030 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 0.9449 -4.9827 -0.8898 24 1 0.9453 -4.9822 0.8902 25 1 3.2682 -5.8486 0.8907 26 1 3.2685 -5.8495 -0.8893 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382008140.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:28 Heat of formation + Delta-G solvation = 69.842054 kcal Electronic energy + Delta-G solvation = -12849.927003 eV Core-core repulsion = 10286.195324 eV Total energy + Delta-G solvation = -2563.731679 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.058 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.40616 -36.93877 -33.78309 -33.06638 -32.87406 -31.02818 -27.08036 -25.18213 -23.77251 -22.57896 -22.16655 -19.58554 -17.19227 -16.85450 -16.40071 -15.88694 -15.48994 -14.64846 -14.47974 -13.61321 -13.38555 -13.23478 -12.63766 -12.05577 -11.79036 -11.26917 -11.19700 -11.09424 -11.04422 -10.85518 -10.75774 -10.51886 -10.10745 -9.17494 -8.91326 -8.25638 -8.04686 -6.13523 -4.15789 0.61543 0.62204 1.79733 1.93314 2.16184 3.32104 3.34762 3.38741 4.05859 4.33205 4.51527 4.77841 5.10531 5.13027 5.23039 5.53442 5.69501 6.01007 6.09919 6.22245 7.02051 7.36261 7.75295 7.75424 8.09005 8.46554 8.95855 9.48968 10.97772 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.072223 B = 0.004030 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.597453 B = 6946.879363 C = 7308.728678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.910 3.090 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.067 0.933 9 C 0.196 3.804 10 O -0.389 6.389 11 C 0.080 3.920 12 C -0.112 4.112 13 S 0.058 5.942 14 C 0.179 3.821 15 N -0.298 5.298 16 N 0.017 4.983 17 N -0.297 5.297 18 H 0.469 0.531 19 N -0.280 5.280 20 H 0.265 0.735 21 H 0.009 0.991 22 H 0.009 0.991 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.105 0.895 26 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.064 -19.005 0.007 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.309 6.309 11 C 0.000 4.000 12 C -0.262 4.262 13 S 0.282 5.718 14 C -0.212 4.212 15 N -0.179 5.179 16 N 0.020 4.980 17 N -0.145 5.145 18 H 0.324 0.676 19 N -0.127 5.127 20 H 0.075 0.925 21 H 0.027 0.973 22 H 0.027 0.973 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.123 0.877 26 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.550 -19.276 0.006 19.806 hybrid contribution 1.173 0.498 0.002 1.274 sum 5.722 -18.777 0.009 19.630 Atomic orbital electron populations 1.69948 1.06098 1.27387 1.50221 1.24951 0.95011 0.99466 0.95036 0.86363 0.79287 0.81751 0.78888 1.19973 1.21132 1.19977 1.21001 0.94115 0.89184 1.51282 0.91459 1.20281 0.88714 0.83093 0.95765 1.87871 1.35561 1.12163 1.95301 1.21737 0.92669 0.84921 1.00672 1.23694 1.02676 0.91352 1.08433 1.85682 0.98526 0.96387 1.91189 1.27716 0.98134 0.94485 1.00862 1.75766 0.99815 1.20307 1.21967 1.78257 1.21322 0.89860 1.08544 1.51109 1.01932 1.11101 1.50405 0.67609 1.78920 0.97393 1.09923 1.26466 0.92518 0.97328 0.97338 0.93161 0.93166 0.87686 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.29 55.43 0.74 -25.76 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 3 Si 0.91 21.64 29.54 -169.99 -5.02 16.62 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.52 -15.04 9.43 -34.44 -0.32 -15.36 15 8 H 0.07 1.94 7.81 -52.48 -0.41 1.53 15 9 C 0.20 5.25 5.69 36.01 0.20 5.45 15 10 O -0.39 -9.09 10.33 -35.23 -0.36 -9.45 15 11 C 0.08 1.40 5.95 37.16 0.22 1.62 15 12 C -0.11 -1.64 5.97 37.16 0.22 -1.42 15 13 S 0.06 0.73 22.17 -107.50 -2.38 -1.65 15 14 C 0.18 2.39 8.44 -90.78 -0.77 1.63 15 15 N -0.30 -4.19 11.92 30.16 0.36 -3.83 15 16 N 0.02 0.20 13.43 60.35 0.81 1.01 15 17 N -0.30 -2.65 8.44 60.35 0.51 -2.14 15 18 H 0.47 1.80 8.96 -331.94 -2.98 -1.18 15 19 N -0.28 -3.34 12.90 30.17 0.39 -2.95 15 20 H 0.27 7.34 8.31 -40.82 -0.34 7.01 15 21 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 22 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 23 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.10 1.54 8.14 -51.92 -0.42 1.12 15 26 H 0.10 1.54 8.14 -51.92 -0.42 1.12 15 LS Contribution 258.20 15.07 3.89 3.89 Total: -1.00 -32.34 258.20 -6.67 -39.01 By element: Atomic # 1 Polarization: -3.13 SS G_CDS: -5.06 Total: -8.19 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.54 Total: -6.56 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 2.81 Total: -33.66 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.36 Total: -9.45 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.38 Total: -1.65 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.34 -6.67 -39.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382008140.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.854 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds