Wall clock time and date at job start Mon Mar 30 2020 02:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99675 * 2 1 4 4 H 1.48491 * 109.47154 * 240.00187 * 3 2 1 5 5 H 1.48504 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46853 * 120.00514 * 3 2 1 7 7 C 1.37875 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99705 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00148 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47308 * 180.02562 * 9 7 2 11 11 C 1.42891 * 114.00234 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47315 * 180.02562 * 11 10 9 13 13 S 1.81405 * 109.47193 * 180.02562 * 12 11 10 14 14 C 1.76205 * 102.99827 * 180.02562 * 13 12 11 15 15 N 1.33428 * 126.26617 * 359.97438 * 14 13 12 16 16 N 1.28573 * 109.88338 * 179.97438 * 15 14 13 17 17 N 1.28932 * 109.64881 * 0.02562 * 16 15 14 18 18 H 0.96999 * 126.47146 * 180.02562 * 17 16 15 19 19 N 1.31735 * 126.26070 * 179.97438 * 14 13 12 20 20 H 0.97001 * 119.99981 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46852 * 60.00258 * 9 7 2 22 22 H 1.09001 * 109.46963 * 300.00335 * 9 7 2 23 23 H 1.09002 * 109.47034 * 60.00464 * 11 10 9 24 24 H 1.08997 * 109.47629 * 300.00703 * 11 10 9 25 25 H 1.08999 * 109.47023 * 60.00663 * 12 11 10 26 26 H 1.09002 * 109.47454 * 300.00145 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5653 -4.8753 0.0000 12 6 2.6483 -5.9561 0.0006 13 16 1.8682 -7.5938 0.0006 14 6 3.2478 -8.6899 0.0021 15 7 4.5350 -8.3386 0.0025 16 7 5.2752 -9.3899 0.0042 17 7 4.5320 -10.4434 0.0043 18 1 4.8370 -11.3642 0.0058 19 7 3.1971 -10.0063 0.0030 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 0.9449 -4.9827 -0.8898 24 1 0.9453 -4.9822 0.8902 25 1 3.2682 -5.8486 0.8907 26 1 3.2685 -5.8495 -0.8893 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382008140.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:28 Heat of formation + Delta-G solvation = 45.933933 kcal Electronic energy + Delta-G solvation = -12850.963737 eV Core-core repulsion = 10286.195324 eV Total energy + Delta-G solvation = -2564.768413 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.058 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.33983 -38.72123 -35.00531 -34.70295 -33.99868 -32.53333 -29.15521 -26.17323 -24.77863 -24.54741 -23.63658 -20.48218 -18.67644 -18.11376 -17.79613 -17.54062 -17.01195 -16.47547 -15.56822 -15.17777 -14.84341 -14.83949 -13.88370 -13.56883 -13.09099 -12.93169 -12.70190 -12.58645 -12.40573 -12.22164 -12.02946 -12.02526 -11.72442 -11.28183 -10.87425 -10.27205 -9.04931 -8.30396 -6.42600 -0.39242 -0.29391 0.79579 0.82479 1.42058 1.43111 1.47258 1.55732 2.37116 3.03690 3.11738 3.20685 3.56053 3.85058 3.99451 4.16593 4.37125 4.65334 4.74385 4.92258 5.19304 5.56141 5.61617 5.96027 6.49426 6.79711 6.81564 7.28618 8.81317 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.072223 B = 0.004030 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.597453 B = 6946.879363 C = 7308.728678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.551 4.551 8 H 0.063 0.937 9 C 0.208 3.792 10 O -0.405 6.405 11 C 0.073 3.927 12 C -0.108 4.108 13 S 0.089 5.911 14 C 0.165 3.835 15 N -0.329 5.329 16 N 0.015 4.985 17 N -0.263 5.263 18 H 0.490 0.510 19 N -0.283 5.283 20 H 0.271 0.729 21 H -0.006 1.006 22 H -0.006 1.006 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -19.581 0.008 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.589 4.589 8 H 0.081 0.919 9 C 0.133 3.867 10 O -0.325 6.325 11 C -0.006 4.006 12 C -0.257 4.257 13 S 0.313 5.687 14 C -0.227 4.227 15 N -0.208 5.208 16 N 0.018 4.982 17 N -0.117 5.117 18 H 0.350 0.650 19 N -0.132 5.132 20 H 0.080 0.920 21 H 0.011 0.989 22 H 0.011 0.989 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.121 0.879 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.268 -19.897 0.007 20.583 hybrid contribution 0.958 0.452 0.002 1.060 sum 6.226 -19.445 0.009 20.418 Atomic orbital electron populations 1.70051 1.07645 1.28746 1.50267 1.25938 0.95992 1.03303 0.93936 0.85242 0.78091 0.76799 0.79330 1.19088 1.20007 1.19096 1.21365 0.94213 0.90801 1.52520 0.91919 1.19913 0.88559 0.84032 0.94200 1.87806 1.35580 1.13740 1.95374 1.21978 0.93896 0.83121 1.01624 1.23465 1.01750 0.92197 1.08299 1.85510 0.97456 0.94372 1.91353 1.27774 0.98193 0.95004 1.01693 1.75752 1.00216 1.21443 1.23435 1.78199 1.21205 0.90095 1.08695 1.51118 1.00861 1.11872 1.47870 0.64986 1.78869 0.98630 1.09317 1.26343 0.92002 0.98862 0.98872 0.92170 0.92177 0.87886 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.01 13.29 21.45 0.28 -54.73 15 2 C 0.01 0.41 5.46 84.65 0.46 0.87 15 3 Si 0.98 43.96 29.54 68.60 2.03 45.99 15 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 15 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 7 C -0.55 -32.45 9.43 25.60 0.24 -32.21 15 8 H 0.06 3.65 7.81 -2.91 -0.02 3.62 15 9 C 0.21 11.43 5.69 71.24 0.41 11.83 15 10 O -0.40 -19.21 10.33 -148.98 -1.54 -20.75 15 11 C 0.07 2.54 5.95 71.98 0.43 2.97 15 12 C -0.11 -3.11 5.97 71.98 0.43 -2.68 15 13 S 0.09 2.15 22.17 -56.49 -1.25 0.90 15 14 C 0.16 4.17 8.44 180.41 1.52 5.69 15 15 N -0.33 -8.88 11.92 -58.49 -0.70 -9.57 15 16 N 0.01 0.33 13.43 37.02 0.50 0.82 15 17 N -0.26 -4.12 8.44 37.02 0.31 -3.81 15 18 H 0.49 2.45 8.96 -340.37 -3.05 -0.60 15 19 N -0.28 -6.21 12.90 -58.47 -0.75 -6.96 15 20 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 21 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15 22 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 15 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 24 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 25 H 0.10 3.00 8.14 -2.39 -0.02 2.98 15 26 H 0.10 3.00 8.14 -2.39 -0.02 2.98 15 Total: -1.00 -68.46 258.20 0.53 -67.93 By element: Atomic # 1 Polarization: -4.45 SS G_CDS: -1.84 Total: -6.29 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 3.49 Total: -13.52 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -0.36 Total: -74.25 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -1.54 Total: -20.75 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -1.25 Total: 0.90 kcal Total: -68.46 0.53 -67.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382008140.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.866 kcal (2) G-P(sol) polarization free energy of solvation -68.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds