Wall clock time and date at job start Mon Mar 30 2020 02:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47033 * 2 1 4 4 C 1.35025 * 126.39770 * 265.00081 * 3 2 1 5 5 N 1.30523 * 108.72196 * 179.72652 * 4 3 2 6 6 C 1.34152 * 109.28138 * 0.44457 * 5 4 3 7 7 Cl 1.73599 * 126.00188 * 179.82380 * 6 5 4 8 8 C 1.34762 * 108.00290 * 359.55465 * 6 5 4 9 9 C 1.50694 * 126.60401 * 180.24632 * 8 6 5 10 10 H 1.09005 * 109.47328 * 195.02523 * 9 8 6 11 11 O 1.42901 * 109.47099 * 315.02237 * 9 8 6 12 12 C 1.50696 * 109.47220 * 75.02866 * 9 8 6 13 13 H 1.07995 * 120.00249 * 359.97438 * 12 9 8 14 14 C 1.37882 * 119.99941 * 180.02562 * 12 9 8 15 15 N 1.31513 * 119.99918 * 179.97438 * 14 12 9 16 16 Si 1.86802 * 120.00051 * 359.97438 * 14 12 9 17 17 H 1.48506 * 109.46707 * 90.00456 * 16 14 12 18 18 H 1.48493 * 109.47291 * 210.00222 * 16 14 12 19 19 H 1.48501 * 109.47196 * 330.00825 * 16 14 12 20 20 H 1.08999 * 109.47496 * 299.99998 * 1 2 3 21 21 H 1.08995 * 109.47375 * 60.00700 * 1 2 3 22 22 H 1.09010 * 109.47082 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47457 * 239.99528 * 2 1 3 24 24 H 1.09002 * 109.46981 * 119.99851 * 2 1 3 25 25 H 1.07999 * 125.63819 * 0.02562 * 4 3 2 26 26 H 0.96698 * 113.99654 * 60.00514 * 11 9 8 27 27 H 0.97001 * 120.00204 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3746 2.1050 -1.0827 5 7 2.7510 3.2910 -0.6884 6 6 2.6589 3.3635 0.6480 7 17 3.0558 4.7425 1.6249 8 6 2.1986 2.1798 1.0985 9 6 1.9338 1.8063 2.5342 10 1 1.8274 0.7244 2.6146 11 8 3.0256 2.2392 3.3482 12 6 0.6646 2.4717 3.0005 13 1 0.1059 3.1024 2.3249 14 6 0.2173 2.2762 4.2900 15 7 -0.8900 2.8573 4.6970 16 14 1.1840 1.1859 5.4588 17 1 2.1792 2.0078 6.1933 18 1 0.2542 0.5517 6.4274 19 1 1.8874 0.1317 4.6847 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3634 -1.0278 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.3476 1.7613 -2.1062 26 1 3.1788 3.1937 3.3254 27 1 -1.2050 2.7195 5.6041 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536197027.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:05 Heat of formation + Delta-G solvation = 2.782358 kcal Electronic energy + Delta-G solvation = -14461.074334 eV Core-core repulsion = 11860.098271 eV Total energy + Delta-G solvation = -2600.976063 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.72050 -36.31416 -35.80270 -34.53267 -32.37469 -30.18918 -29.34030 -26.78073 -23.58474 -22.73273 -20.99703 -19.47818 -17.65484 -16.80595 -15.16188 -15.03576 -14.98015 -14.36526 -13.87611 -13.64404 -13.16207 -12.99688 -12.66653 -11.96851 -11.84927 -11.38397 -11.13168 -11.02010 -10.89268 -10.56727 -10.30167 -9.66510 -9.25806 -9.14738 -8.84459 -8.74775 -7.65393 -6.21893 -4.35123 2.42419 2.54657 3.29320 3.35637 3.40803 3.42549 3.51530 4.39382 4.80362 5.00827 5.07157 5.16614 5.29221 5.33458 5.70827 5.80986 5.85337 5.91840 6.36539 6.46471 6.78216 7.08325 7.34867 7.50756 8.17895 8.31076 8.66822 8.86881 9.37652 10.87649 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.013129 C = 0.009968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.687536 B = 2132.235976 C = 2808.388657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 N -0.450 5.450 4 C 0.173 3.827 5 N -0.488 5.488 6 C 0.036 3.964 7 Cl -0.016 7.016 8 C 0.033 3.967 9 C 0.259 3.741 10 H 0.069 0.931 11 O -0.579 6.579 12 C -0.549 4.549 13 H 0.079 0.921 14 C 0.087 3.913 15 N -0.883 5.883 16 Si 0.906 3.094 17 H -0.275 1.275 18 H -0.302 1.302 19 H -0.269 1.269 20 H 0.084 0.916 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.205 0.795 26 H 0.367 0.633 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 -5.712 -8.318 11.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.135 5.135 4 C -0.109 4.109 5 N -0.208 5.208 6 C -0.117 4.117 7 Cl 0.012 6.988 8 C -0.085 4.085 9 C 0.201 3.799 10 H 0.087 0.913 11 O -0.387 6.387 12 C -0.586 4.586 13 H 0.097 0.903 14 C -0.118 4.118 15 N -0.519 5.519 16 Si 0.735 3.265 17 H -0.200 1.200 18 H -0.230 1.230 19 H -0.194 1.194 20 H 0.103 0.897 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.222 0.778 26 H 0.218 0.782 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.814 -5.684 -8.478 11.286 hybrid contribution 0.030 -0.361 0.906 0.976 sum 4.844 -6.045 -7.573 10.833 Atomic orbital electron populations 1.22202 0.93616 1.02888 1.04474 1.21828 0.96284 0.79538 1.04095 1.45377 1.48729 1.12765 1.06639 1.24579 1.04875 0.87786 0.93632 1.69772 1.21497 1.18951 1.10551 1.20133 1.12394 0.89704 0.89475 1.98295 1.93014 1.41105 1.66388 1.22306 1.02880 0.90832 0.92436 1.18437 0.86613 0.96380 0.78511 0.91339 1.86392 1.54296 1.29063 1.68984 1.21244 1.06539 1.31938 0.98910 0.90306 1.24951 0.94178 0.94785 0.97909 1.69928 1.21312 1.42347 1.18300 0.86367 0.78851 0.81053 0.80196 1.20021 1.22992 1.19378 0.89714 0.92238 0.90973 0.89154 0.89043 0.77808 0.78247 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 15 2 C 0.10 1.34 6.59 -4.04 -0.03 1.32 15 3 N -0.45 -7.69 2.75 -113.94 -0.31 -8.01 15 4 C 0.17 2.80 12.56 -90.37 -1.13 1.66 15 5 N -0.49 -9.73 11.25 -11.79 -0.13 -9.86 15 6 C 0.04 0.78 7.62 -17.77 -0.14 0.64 15 7 Cl -0.02 -0.33 26.64 -51.86 -1.38 -1.71 15 8 C 0.03 0.71 5.88 -81.52 -0.48 0.23 15 9 C 0.26 6.08 2.60 -29.04 -0.08 6.01 15 10 H 0.07 1.58 6.09 -51.93 -0.32 1.26 15 11 O -0.58 -13.78 10.98 -35.23 -0.39 -14.16 15 12 C -0.55 -14.77 9.33 -34.44 -0.32 -15.09 15 13 H 0.08 2.36 7.98 -52.49 -0.42 1.94 15 14 C 0.09 2.43 5.47 -17.82 -0.10 2.33 15 15 N -0.88 -25.90 13.96 55.43 0.77 -25.13 15 16 Si 0.91 22.21 26.18 -169.99 -4.45 17.76 15 17 H -0.27 -6.81 7.11 56.52 0.40 -6.41 15 18 H -0.30 -7.30 7.11 56.52 0.40 -6.90 15 19 H -0.27 -6.39 6.54 56.52 0.37 -6.02 15 20 H 0.08 1.44 8.14 -51.93 -0.42 1.02 15 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.07 0.74 8.14 -51.92 -0.42 0.31 15 23 H 0.09 0.81 8.13 -51.93 -0.42 0.39 15 24 H 0.09 1.19 7.26 -51.93 -0.38 0.82 15 25 H 0.21 2.25 8.06 -52.49 -0.42 1.82 15 26 H 0.37 8.35 6.17 45.56 0.28 8.63 15 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 LS Contribution 249.23 15.07 3.76 3.76 Total: -1.00 -31.80 249.23 -6.14 -37.93 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -2.11 Total: 4.19 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.89 Total: -4.78 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.33 Total: -43.00 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.39 Total: -14.16 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.45 Total: 17.76 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.38 Total: -1.71 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.80 -6.14 -37.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536197027.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.717 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds