Wall clock time and date at job start Mon Mar 30 2020 02:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47033 * 2 1 4 4 C 1.35025 * 126.39770 * 265.00081 * 3 2 1 5 5 N 1.30523 * 108.72196 * 179.72652 * 4 3 2 6 6 C 1.34152 * 109.28138 * 0.44457 * 5 4 3 7 7 Cl 1.73599 * 126.00188 * 179.82380 * 6 5 4 8 8 C 1.34762 * 108.00290 * 359.55465 * 6 5 4 9 9 C 1.50694 * 126.60401 * 180.24632 * 8 6 5 10 10 H 1.09005 * 109.47328 * 195.02523 * 9 8 6 11 11 O 1.42901 * 109.47099 * 315.02237 * 9 8 6 12 12 C 1.50696 * 109.47220 * 75.02866 * 9 8 6 13 13 H 1.07995 * 120.00249 * 359.97438 * 12 9 8 14 14 C 1.37882 * 119.99941 * 180.02562 * 12 9 8 15 15 N 1.31513 * 119.99918 * 179.97438 * 14 12 9 16 16 Si 1.86802 * 120.00051 * 359.97438 * 14 12 9 17 17 H 1.48506 * 109.46707 * 90.00456 * 16 14 12 18 18 H 1.48493 * 109.47291 * 210.00222 * 16 14 12 19 19 H 1.48501 * 109.47196 * 330.00825 * 16 14 12 20 20 H 1.08999 * 109.47496 * 299.99998 * 1 2 3 21 21 H 1.08995 * 109.47375 * 60.00700 * 1 2 3 22 22 H 1.09010 * 109.47082 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47457 * 239.99528 * 2 1 3 24 24 H 1.09002 * 109.46981 * 119.99851 * 2 1 3 25 25 H 1.07999 * 125.63819 * 0.02562 * 4 3 2 26 26 H 0.96698 * 113.99654 * 60.00514 * 11 9 8 27 27 H 0.97001 * 120.00204 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3746 2.1050 -1.0827 5 7 2.7510 3.2910 -0.6884 6 6 2.6589 3.3635 0.6480 7 17 3.0558 4.7425 1.6249 8 6 2.1986 2.1798 1.0985 9 6 1.9338 1.8063 2.5342 10 1 1.8274 0.7244 2.6146 11 8 3.0256 2.2392 3.3482 12 6 0.6646 2.4717 3.0005 13 1 0.1059 3.1024 2.3249 14 6 0.2173 2.2762 4.2900 15 7 -0.8900 2.8573 4.6970 16 14 1.1840 1.1859 5.4588 17 1 2.1792 2.0078 6.1933 18 1 0.2542 0.5517 6.4274 19 1 1.8874 0.1317 4.6847 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3634 -1.0278 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.3476 1.7613 -2.1062 26 1 3.1788 3.1937 3.3254 27 1 -1.2050 2.7195 5.6041 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536197027.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:05 Heat of formation + Delta-G solvation = -19.661489 kcal Electronic energy + Delta-G solvation = -14462.047572 eV Core-core repulsion = 11860.098271 eV Total energy + Delta-G solvation = -2601.949301 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.13636 -38.11509 -37.43430 -35.77627 -34.49890 -31.72123 -30.72383 -28.62138 -24.84040 -24.49416 -22.37845 -21.01432 -19.57244 -18.30455 -16.99820 -16.59176 -16.50641 -16.05980 -15.29006 -14.95380 -14.83677 -14.76131 -13.91829 -13.88286 -13.23302 -12.99725 -12.85621 -12.53229 -12.33041 -12.19630 -11.94680 -11.54629 -10.97024 -10.88936 -10.81280 -10.45942 -9.21562 -8.37114 -6.53317 0.93926 1.05886 1.38750 1.44042 1.55838 1.94449 2.02403 2.34943 2.95390 3.72704 3.79134 3.89714 3.96199 4.15853 4.28936 4.42311 4.68370 4.83856 4.97791 5.27059 5.31025 5.34181 5.43994 6.04206 6.26418 6.56685 6.86349 6.88310 7.22644 8.76548 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.013129 C = 0.009968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.687536 B = 2132.235976 C = 2808.388657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.447 5.447 4 C 0.204 3.796 5 N -0.523 5.523 6 C 0.019 3.981 7 Cl -0.023 7.023 8 C 0.000 4.000 9 C 0.268 3.732 10 H 0.077 0.923 11 O -0.582 6.582 12 C -0.540 4.540 13 H 0.035 0.965 14 C 0.039 3.961 15 N -0.927 5.927 16 Si 0.962 3.038 17 H -0.278 1.278 18 H -0.295 1.295 19 H -0.254 1.254 20 H 0.033 0.967 21 H 0.065 0.935 22 H 0.103 0.897 23 H 0.145 0.855 24 H 0.088 0.912 25 H 0.263 0.737 26 H 0.369 0.631 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.654 -7.860 -9.897 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.131 5.131 4 C -0.078 4.078 5 N -0.244 5.244 6 C -0.134 4.134 7 Cl 0.005 6.995 8 C -0.118 4.118 9 C 0.209 3.791 10 H 0.094 0.906 11 O -0.391 6.391 12 C -0.578 4.578 13 H 0.053 0.947 14 C -0.162 4.162 15 N -0.566 5.566 16 Si 0.789 3.211 17 H -0.203 1.203 18 H -0.223 1.223 19 H -0.178 1.178 20 H 0.052 0.948 21 H 0.084 0.916 22 H 0.122 0.878 23 H 0.162 0.838 24 H 0.107 0.893 25 H 0.278 0.722 26 H 0.221 0.779 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.828 -7.856 -10.060 14.032 hybrid contribution -0.324 0.316 1.246 1.325 sum 5.504 -7.540 -8.815 12.839 Atomic orbital electron populations 1.22151 0.93975 1.04260 1.02228 1.22261 0.95912 0.77536 1.06648 1.45645 1.48005 1.13986 1.05483 1.25731 1.00655 0.86217 0.95237 1.69783 1.23763 1.21244 1.09576 1.20402 1.12806 0.89693 0.90479 1.98278 1.93043 1.41475 1.66721 1.21878 1.05318 0.92006 0.92628 1.18131 0.84689 0.96140 0.80120 0.90593 1.86338 1.54026 1.29392 1.69393 1.21294 1.07514 1.30884 0.98086 0.94654 1.25703 0.94916 0.96080 0.99533 1.70039 1.23176 1.44395 1.18985 0.85476 0.77529 0.79744 0.78368 1.20335 1.22289 1.17765 0.94762 0.91562 0.87825 0.83754 0.89350 0.72172 0.77938 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 10.24 71.98 0.74 -3.22 15 2 C 0.10 2.11 6.59 86.38 0.57 2.68 15 3 N -0.45 -14.06 2.75 -514.40 -1.42 -15.48 15 4 C 0.20 5.83 12.56 180.26 2.26 8.10 15 5 N -0.52 -19.93 11.25 -191.22 -2.15 -22.08 15 6 C 0.02 0.82 7.62 83.54 0.64 1.46 15 7 Cl -0.02 -0.96 26.64 -2.72 -0.07 -1.03 15 8 C 0.00 0.01 5.88 40.95 0.24 0.25 15 9 C 0.27 12.50 2.60 29.10 0.08 12.57 15 10 H 0.08 3.41 6.09 -2.38 -0.01 3.39 15 11 O -0.58 -27.38 10.98 -148.98 -1.64 -29.02 15 12 C -0.54 -29.79 9.33 25.60 0.24 -29.56 15 13 H 0.04 2.22 7.98 -2.91 -0.02 2.19 15 14 C 0.04 2.20 5.47 84.66 0.46 2.66 15 15 N -0.93 -55.91 13.96 21.45 0.30 -55.61 15 16 Si 0.96 45.60 26.18 68.60 1.80 47.40 15 17 H -0.28 -13.24 7.11 99.48 0.71 -12.53 15 18 H -0.30 -13.59 7.11 99.48 0.71 -12.88 15 19 H -0.25 -11.29 6.54 99.48 0.65 -10.64 15 20 H 0.03 1.15 8.14 -2.39 -0.02 1.13 15 21 H 0.07 1.45 8.14 -2.39 -0.02 1.43 15 22 H 0.10 1.76 8.14 -2.38 -0.02 1.74 15 23 H 0.14 1.67 8.13 -2.39 -0.02 1.65 15 24 H 0.09 2.03 7.26 -2.39 -0.02 2.01 15 25 H 0.26 4.08 8.06 -2.91 -0.02 4.05 15 26 H 0.37 16.89 6.17 -74.06 -0.46 16.43 15 27 H 0.27 15.25 8.31 -92.71 -0.77 14.48 15 Total: -1.00 -71.16 249.23 2.72 -68.43 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.68 Total: 12.45 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 5.22 Total: -5.06 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -3.27 Total: -93.17 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.64 Total: -29.02 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.80 Total: 47.40 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.07 Total: -1.03 kcal Total: -71.16 2.72 -68.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536197027.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.773 kcal (2) G-P(sol) polarization free energy of solvation -71.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds