Wall clock time and date at job start Mon Mar 30 2020 02:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 119.99809 * 2 1 4 4 C 1.50700 * 109.47420 * 269.99725 * 3 2 1 5 5 H 1.08004 * 119.99509 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00288 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99964 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00149 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46976 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47242 * 120.00101 * 8 6 4 11 11 H 1.48498 * 109.47173 * 240.00285 * 8 6 4 12 12 C 1.34772 * 119.99876 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00281 * 179.97438 * 12 2 1 14 14 C 1.50701 * 120.00170 * 0.02562 * 12 2 1 15 15 H 1.09001 * 109.97389 * 40.39673 * 14 12 2 16 16 C 1.55389 * 109.87116 * 279.34324 * 14 12 2 17 17 S 1.83760 * 100.95429 * 199.16602 * 16 14 12 18 18 C 1.83298 * 96.34063 * 21.48589 * 17 16 14 19 19 N 1.47538 * 109.86889 * 161.45296 * 14 12 2 20 20 H 1.08996 * 109.46977 * 270.00010 * 1 2 3 21 21 H 1.08998 * 109.47153 * 30.00000 * 1 2 3 22 22 H 1.09003 * 109.47173 * 149.99845 * 1 2 3 23 23 H 1.09005 * 109.47383 * 30.00366 * 3 2 1 24 24 H 1.09001 * 109.46968 * 149.99661 * 3 2 1 25 25 H 0.96997 * 119.99930 * 179.97438 * 7 6 4 26 26 H 1.09001 * 111.11883 * 81.24328 * 16 14 12 27 27 H 1.08999 * 111.15887 * 317.10604 * 16 14 12 28 28 H 1.09002 * 110.41725 * 244.27345 * 18 17 16 29 29 H 1.09006 * 110.42418 * 121.80249 * 18 17 16 30 30 H 1.00901 * 110.99862 * 44.10163 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5551 3.6171 -0.6731 8 14 3.4377 3.4171 -3.4339 9 1 2.8588 2.4176 -4.3672 10 1 2.8007 4.7381 -3.6665 11 1 4.9002 3.5246 -3.6679 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4723 0.0005 15 1 0.5238 -2.4048 -0.6637 16 6 0.9153 -2.8108 1.4424 17 16 0.5961 -4.6141 1.2913 18 6 1.6574 -4.8851 -0.1784 19 7 2.2741 -3.5644 -0.4402 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5139 23 1 1.6084 2.0284 0.5139 24 1 3.1499 1.1384 0.5139 25 1 4.0325 4.4426 -0.8503 26 1 0.0031 -2.2702 1.6951 27 1 1.7019 -2.6106 2.1699 28 1 1.0542 -5.1988 -1.0304 29 1 2.4256 -5.6273 0.0388 30 1 3.1791 -3.4942 0.0003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833486.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:36 Heat of formation + Delta-G solvation = -23.002594 kcal Electronic energy + Delta-G solvation = -14330.452909 eV Core-core repulsion = 11866.235527 eV Total energy + Delta-G solvation = -2464.217382 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.56671 -36.33107 -34.95964 -32.69665 -30.47367 -27.85233 -26.24021 -25.66317 -23.81491 -21.86320 -18.96693 -17.23582 -16.82582 -16.56866 -15.63669 -15.09814 -14.83016 -14.28187 -14.15093 -13.94548 -13.05572 -12.76793 -12.46433 -12.29325 -12.17091 -11.98069 -11.73179 -11.25450 -10.94073 -10.68934 -10.61818 -10.20357 -9.67821 -9.07042 -8.87373 -8.48776 -7.94281 -7.79727 -6.09717 -4.14669 1.58116 2.07613 3.07593 3.27619 3.35547 3.40004 3.55953 4.05632 4.41208 4.50339 4.77324 4.90041 4.95183 5.25365 5.25474 5.33088 5.45267 5.63542 5.80309 6.12108 6.31590 6.92895 6.99318 7.32506 7.40862 7.86182 8.15658 8.22634 8.76832 8.93407 9.50786 10.98561 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.050459 B = 0.006299 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.772541 B = 4443.795638 C = 4628.392470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.594 5.594 3 C 0.245 3.755 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.516 3.484 13 O -0.530 6.530 14 C 0.059 3.941 15 H 0.118 0.882 16 C -0.079 4.079 17 S -0.350 6.350 18 C 0.117 3.883 19 N -0.656 5.656 20 H 0.047 0.953 21 H 0.079 0.921 22 H 0.059 0.941 23 H 0.035 0.965 24 H 0.045 0.955 25 H 0.263 0.737 26 H 0.117 0.883 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 -12.166 2.718 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.325 5.325 3 C 0.126 3.874 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.299 3.701 13 O -0.406 6.406 14 C -0.057 4.057 15 H 0.136 0.864 16 C -0.230 4.230 17 S -0.127 6.127 18 C -0.122 4.122 19 N -0.288 5.288 20 H 0.066 0.934 21 H 0.097 0.903 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.135 0.865 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.542 -12.709 2.726 15.027 hybrid contribution 0.814 1.072 -0.672 1.505 sum -6.728 -11.637 2.053 13.597 Atomic orbital electron populations 1.21768 0.81224 1.03013 1.00671 1.48117 1.06330 1.07554 1.70530 1.19363 0.92562 0.77681 0.97791 1.21453 1.36644 1.06370 0.92189 0.92287 1.24940 0.95249 0.96335 0.97568 1.69940 1.38290 1.14394 1.30741 0.86418 0.78135 0.78315 0.84431 1.19743 1.20926 1.20816 1.19683 0.87846 0.84339 0.78195 1.90685 1.13467 1.86576 1.49913 1.22989 0.96975 0.91787 0.93945 0.86397 1.25116 1.05862 0.92039 0.99964 1.87983 1.67567 1.13074 1.44084 1.24978 0.98578 0.93677 0.95014 1.60678 1.07038 0.99396 1.61708 0.93408 0.90263 0.92258 0.94693 0.93715 0.92694 0.86485 0.88401 0.87572 0.87964 0.81209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 9.85 59.85 0.59 1.73 16 2 N -0.59 -11.96 2.86 -182.96 -0.52 -12.49 16 3 C 0.24 6.22 5.16 -5.20 -0.03 6.19 16 4 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.52 10.19 6.96 -10.99 -0.08 10.12 16 13 O -0.53 -12.71 15.50 5.56 0.09 -12.62 16 14 C 0.06 0.86 2.55 -67.25 -0.17 0.68 16 15 H 0.12 1.60 6.36 -51.93 -0.33 1.27 16 16 C -0.08 -0.99 6.78 38.43 0.26 -0.73 16 17 S -0.35 -4.34 23.37 -107.50 -2.51 -6.85 16 18 C 0.12 1.30 8.12 60.72 0.49 1.80 16 19 N -0.66 -9.29 6.76 -108.24 -0.73 -10.02 16 20 H 0.05 0.59 8.12 -51.93 -0.42 0.17 16 21 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 22 H 0.06 0.72 5.96 -51.93 -0.31 0.41 16 23 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 24 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.12 1.27 7.86 -51.93 -0.41 0.86 16 27 H 0.10 1.30 8.10 -51.93 -0.42 0.87 16 28 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.37 5.47 7.90 -39.29 -0.31 5.16 16 LS Contribution 267.18 15.07 4.03 4.03 Total: -1.00 -31.83 267.18 -7.11 -38.93 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -3.81 Total: 1.51 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 0.65 Total: 6.36 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.52 Total: -48.02 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -2.51 Total: -6.85 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.83 -7.11 -38.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833486.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.931 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds