Wall clock time and date at job start Mon Mar 30 2020 02:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 119.99809 * 2 1 4 4 C 1.50700 * 109.47420 * 269.99725 * 3 2 1 5 5 H 1.08004 * 119.99509 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00288 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99964 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00149 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46976 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47242 * 120.00101 * 8 6 4 11 11 H 1.48498 * 109.47173 * 240.00285 * 8 6 4 12 12 C 1.34772 * 119.99876 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00281 * 179.97438 * 12 2 1 14 14 C 1.50701 * 120.00170 * 0.02562 * 12 2 1 15 15 H 1.09001 * 109.97389 * 40.39673 * 14 12 2 16 16 C 1.55389 * 109.87116 * 279.34324 * 14 12 2 17 17 S 1.83760 * 100.95429 * 199.16602 * 16 14 12 18 18 C 1.83298 * 96.34063 * 21.48589 * 17 16 14 19 19 N 1.47538 * 109.86889 * 161.45296 * 14 12 2 20 20 H 1.08996 * 109.46977 * 270.00010 * 1 2 3 21 21 H 1.08998 * 109.47153 * 30.00000 * 1 2 3 22 22 H 1.09003 * 109.47173 * 149.99845 * 1 2 3 23 23 H 1.09005 * 109.47383 * 30.00366 * 3 2 1 24 24 H 1.09001 * 109.46968 * 149.99661 * 3 2 1 25 25 H 0.96997 * 119.99930 * 179.97438 * 7 6 4 26 26 H 1.09001 * 111.11883 * 81.24328 * 16 14 12 27 27 H 1.08999 * 111.15887 * 317.10604 * 16 14 12 28 28 H 1.09002 * 110.41725 * 244.27345 * 18 17 16 29 29 H 1.09006 * 110.42418 * 121.80249 * 18 17 16 30 30 H 1.00901 * 110.99862 * 44.10163 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5551 3.6171 -0.6731 8 14 3.4377 3.4171 -3.4339 9 1 2.8588 2.4176 -4.3672 10 1 2.8007 4.7381 -3.6665 11 1 4.9002 3.5246 -3.6679 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4723 0.0005 15 1 0.5238 -2.4048 -0.6637 16 6 0.9153 -2.8108 1.4424 17 16 0.5961 -4.6141 1.2913 18 6 1.6574 -4.8851 -0.1784 19 7 2.2741 -3.5644 -0.4402 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5139 23 1 1.6084 2.0284 0.5139 24 1 3.1499 1.1384 0.5139 25 1 4.0325 4.4426 -0.8503 26 1 0.0031 -2.2702 1.6951 27 1 1.7019 -2.6106 2.1699 28 1 1.0542 -5.1988 -1.0304 29 1 2.4256 -5.6273 0.0388 30 1 3.1791 -3.4942 0.0003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833486.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:36 Heat of formation + Delta-G solvation = -46.872019 kcal Electronic energy + Delta-G solvation = -14331.487965 eV Core-core repulsion = 11866.235527 eV Total energy + Delta-G solvation = -2465.252438 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06514 -37.57817 -36.62765 -34.75396 -31.68339 -29.64228 -27.54791 -26.88304 -25.46747 -23.35656 -20.37484 -18.78395 -18.52246 -17.95629 -17.09936 -16.56688 -16.36183 -15.78761 -15.39602 -15.19534 -14.40567 -14.18591 -13.88719 -13.72214 -13.49114 -13.31372 -13.11086 -12.95019 -12.77987 -12.52536 -12.23423 -11.74731 -11.66077 -10.65728 -10.64196 -9.92184 -9.49940 -8.89016 -8.24160 -6.38511 0.61312 1.09465 1.36871 1.39164 1.50582 1.63509 2.14889 2.38892 2.88622 3.06264 3.36052 3.50710 3.79892 4.08543 4.24877 4.40802 4.49764 4.52082 4.69075 4.94289 4.96253 5.19456 5.32570 5.52138 5.77923 5.85669 6.03498 6.62189 6.71923 7.21640 7.36668 8.83277 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.050459 B = 0.006299 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.772541 B = 4443.795638 C = 4628.392470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.600 5.600 3 C 0.259 3.741 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.268 1.268 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.509 3.491 13 O -0.583 6.583 14 C 0.075 3.925 15 H 0.137 0.863 16 C -0.074 4.074 17 S -0.352 6.352 18 C 0.122 3.878 19 N -0.671 5.671 20 H 0.078 0.922 21 H 0.071 0.929 22 H 0.092 0.908 23 H 0.029 0.971 24 H 0.001 0.999 25 H 0.268 0.732 26 H 0.139 0.861 27 H 0.086 0.914 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.053 -13.325 1.864 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.330 5.330 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.194 1.194 11 H -0.208 1.208 12 C 0.295 3.705 13 O -0.464 6.464 14 C -0.040 4.040 15 H 0.155 0.845 16 C -0.225 4.225 17 S -0.129 6.129 18 C -0.117 4.117 19 N -0.302 5.302 20 H 0.096 0.904 21 H 0.090 0.910 22 H 0.110 0.890 23 H 0.047 0.953 24 H 0.019 0.981 25 H 0.076 0.924 26 H 0.157 0.843 27 H 0.105 0.895 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.217 -13.892 1.876 16.777 hybrid contribution 1.311 1.383 -0.363 1.940 sum -7.906 -12.509 1.514 14.875 Atomic orbital electron populations 1.22084 0.77657 1.04288 1.03082 1.48093 1.08521 1.06087 1.70347 1.18821 0.91254 0.80053 0.96121 1.21724 1.36834 1.06552 0.93055 0.92879 1.25833 0.94885 0.96432 1.01890 1.70048 1.38895 1.14889 1.32936 0.85375 0.77873 0.78406 0.79210 1.19194 1.19383 1.20795 1.20556 0.87549 0.85784 0.76624 1.90652 1.16049 1.87553 1.52097 1.22863 0.96467 0.88887 0.95823 0.84520 1.25064 1.06483 0.92765 0.98165 1.88043 1.67596 1.12331 1.44883 1.25133 0.99074 0.92444 0.95007 1.60720 1.06903 1.00570 1.62054 0.90376 0.91002 0.88986 0.95288 0.98098 0.92357 0.84266 0.89489 0.85876 0.86059 0.82046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.93 9.85 127.77 1.26 3.19 16 2 N -0.60 -24.11 2.86 -851.14 -2.43 -26.54 16 3 C 0.26 13.56 5.16 85.63 0.44 14.00 16 4 C -0.54 -30.85 9.39 25.60 0.24 -30.61 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.50 5.46 84.65 0.46 0.96 16 7 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 8 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 C 0.51 20.11 6.96 87.66 0.61 20.72 16 13 O -0.58 -28.95 15.50 -3.03 -0.05 -28.99 16 14 C 0.07 2.05 2.55 44.87 0.11 2.16 16 15 H 0.14 3.24 6.36 -2.39 -0.02 3.23 16 16 C -0.07 -1.68 6.78 72.80 0.49 -1.19 16 17 S -0.35 -7.73 23.37 -56.49 -1.32 -9.05 16 18 C 0.12 2.38 8.12 127.46 1.03 3.41 16 19 N -0.67 -17.94 6.76 -496.38 -3.35 -21.29 16 20 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 21 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 22 H 0.09 1.91 5.96 -2.39 -0.01 1.89 16 23 H 0.03 1.53 8.07 -2.38 -0.02 1.51 16 24 H 0.00 0.05 7.42 -2.39 -0.02 0.04 16 25 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 26 H 0.14 2.54 7.86 -2.39 -0.02 2.52 16 27 H 0.09 2.20 8.10 -2.39 -0.02 2.18 16 28 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.36 10.60 7.90 -89.69 -0.71 9.89 16 Total: -1.00 -70.51 267.18 0.25 -70.26 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.44 Total: 11.57 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 4.66 Total: 12.64 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -5.50 Total: -103.00 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.05 Total: -28.99 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -7.73 SS G_CDS: -1.32 Total: -9.05 kcal Total: -70.51 0.25 -70.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833486.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.385 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds