Wall clock time and date at job start Mon Mar 30 2020 02:59:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46494 * 119.99809 * 2 1
4 4 C 1.50700 * 109.47420 * 269.99725 * 3 2 1
5 5 H 1.08004 * 119.99509 * 0.02562 * 4 3 2
6 6 C 1.37875 * 120.00288 * 180.02562 * 4 3 2
7 7 N 1.31521 * 119.99964 * 0.02562 * 6 4 3
8 8 Si 1.86798 * 120.00149 * 180.02562 * 6 4 3
9 9 H 1.48499 * 109.46976 * 0.02562 * 8 6 4
10 10 H 1.48494 * 109.47242 * 120.00101 * 8 6 4
11 11 H 1.48498 * 109.47173 * 240.00285 * 8 6 4
12 12 C 1.34772 * 119.99876 * 179.97438 * 2 1 3
13 13 O 1.21281 * 120.00281 * 179.97438 * 12 2 1
14 14 C 1.50701 * 120.00170 * 0.02562 * 12 2 1
15 15 H 1.09001 * 109.97389 * 40.39673 * 14 12 2
16 16 C 1.55389 * 109.87116 * 279.34324 * 14 12 2
17 17 S 1.83760 * 100.95429 * 199.16602 * 16 14 12
18 18 C 1.83298 * 96.34063 * 21.48589 * 17 16 14
19 19 N 1.47538 * 109.86889 * 161.45296 * 14 12 2
20 20 H 1.08996 * 109.46977 * 270.00010 * 1 2 3
21 21 H 1.08998 * 109.47153 * 30.00000 * 1 2 3
22 22 H 1.09003 * 109.47173 * 149.99845 * 1 2 3
23 23 H 1.09005 * 109.47383 * 30.00366 * 3 2 1
24 24 H 1.09001 * 109.46968 * 149.99661 * 3 2 1
25 25 H 0.96997 * 119.99930 * 179.97438 * 7 6 4
26 26 H 1.09001 * 111.11883 * 81.24328 * 16 14 12
27 27 H 1.08999 * 111.15887 * 317.10604 * 16 14 12
28 28 H 1.09002 * 110.41725 * 244.27345 * 18 17 16
29 29 H 1.09006 * 110.42418 * 121.80249 * 18 17 16
30 30 H 1.00901 * 110.99862 * 44.10163 * 19 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4487 1.7038 -1.4208
5 1 2.0975 1.0961 -2.2417
6 6 3.1269 2.8774 -1.6727
7 7 3.5551 3.6171 -0.6731
8 14 3.4377 3.4171 -3.4339
9 1 2.8588 2.4176 -4.3672
10 1 2.8007 4.7381 -3.6665
11 1 4.9002 3.5246 -3.6679
12 6 2.1389 -1.1672 0.0005
13 8 3.3517 -1.1673 0.0001
14 6 1.3854 -2.4723 0.0005
15 1 0.5238 -2.4048 -0.6637
16 6 0.9153 -2.8108 1.4424
17 16 0.5961 -4.6141 1.2913
18 6 1.6574 -4.8851 -0.1784
19 7 2.2741 -3.5644 -0.4402
20 1 -0.3633 0.0000 1.0276
21 1 -0.3633 0.8900 -0.5138
22 1 -0.3634 -0.8900 -0.5139
23 1 1.6084 2.0284 0.5139
24 1 3.1499 1.1384 0.5139
25 1 4.0325 4.4426 -0.8503
26 1 0.0031 -2.2702 1.6951
27 1 1.7019 -2.6106 2.1699
28 1 1.0542 -5.1988 -1.0304
29 1 2.4256 -5.6273 0.0388
30 1 3.1791 -3.4942 0.0003
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000019833486.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:36
Heat of formation + Delta-G solvation = -46.872019 kcal
Electronic energy + Delta-G solvation = -14331.487965 eV
Core-core repulsion = 11866.235527 eV
Total energy + Delta-G solvation = -2465.252438 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 230.083 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.06514 -37.57817 -36.62765 -34.75396 -31.68339 -29.64228 -27.54791 -26.88304
-25.46747 -23.35656 -20.37484 -18.78395 -18.52246 -17.95629 -17.09936 -16.56688
-16.36183 -15.78761 -15.39602 -15.19534 -14.40567 -14.18591 -13.88719 -13.72214
-13.49114 -13.31372 -13.11086 -12.95019 -12.77987 -12.52536 -12.23423 -11.74731
-11.66077 -10.65728 -10.64196 -9.92184 -9.49940 -8.89016 -8.24160 -6.38511
0.61312 1.09465 1.36871 1.39164 1.50582 1.63509 2.14889 2.38892
2.88622 3.06264 3.36052 3.50710 3.79892 4.08543 4.24877 4.40802
4.49764 4.52082 4.69075 4.94289 4.96253 5.19456 5.32570 5.52138
5.77923 5.85669 6.03498 6.62189 6.71923 7.21640 7.36668 8.83277
Molecular weight = 230.08amu
Principal moments of inertia in cm(-1)
A = 0.050459 B = 0.006299 C = 0.006048
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 554.772541 B = 4443.795638 C = 4628.392470
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.071 3.929
2 N -0.600 5.600
3 C 0.259 3.741
4 C -0.543 4.543
5 H 0.053 0.947
6 C 0.009 3.991
7 N -0.928 5.928
8 Si 0.967 3.033
9 H -0.268 1.268
10 H -0.269 1.269
11 H -0.282 1.282
12 C 0.509 3.491
13 O -0.583 6.583
14 C 0.075 3.925
15 H 0.137 0.863
16 C -0.074 4.074
17 S -0.352 6.352
18 C 0.122 3.878
19 N -0.671 5.671
20 H 0.078 0.922
21 H 0.071 0.929
22 H 0.092 0.908
23 H 0.029 0.971
24 H 0.001 0.999
25 H 0.268 0.732
26 H 0.139 0.861
27 H 0.086 0.914
28 H 0.123 0.877
29 H 0.121 0.879
30 H 0.359 0.641
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.053 -13.325 1.864 16.216
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 N -0.330 5.330
3 C 0.138 3.862
4 C -0.582 4.582
5 H 0.071 0.929
6 C -0.190 4.190
7 N -0.568 5.568
8 Si 0.791 3.209
9 H -0.192 1.192
10 H -0.194 1.194
11 H -0.208 1.208
12 C 0.295 3.705
13 O -0.464 6.464
14 C -0.040 4.040
15 H 0.155 0.845
16 C -0.225 4.225
17 S -0.129 6.129
18 C -0.117 4.117
19 N -0.302 5.302
20 H 0.096 0.904
21 H 0.090 0.910
22 H 0.110 0.890
23 H 0.047 0.953
24 H 0.019 0.981
25 H 0.076 0.924
26 H 0.157 0.843
27 H 0.105 0.895
28 H 0.141 0.859
29 H 0.139 0.861
30 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges -9.217 -13.892 1.876 16.777
hybrid contribution 1.311 1.383 -0.363 1.940
sum -7.906 -12.509 1.514 14.875
Atomic orbital electron populations
1.22084 0.77657 1.04288 1.03082 1.48093 1.08521 1.06087 1.70347
1.18821 0.91254 0.80053 0.96121 1.21724 1.36834 1.06552 0.93055
0.92879 1.25833 0.94885 0.96432 1.01890 1.70048 1.38895 1.14889
1.32936 0.85375 0.77873 0.78406 0.79210 1.19194 1.19383 1.20795
1.20556 0.87549 0.85784 0.76624 1.90652 1.16049 1.87553 1.52097
1.22863 0.96467 0.88887 0.95823 0.84520 1.25064 1.06483 0.92765
0.98165 1.88043 1.67596 1.12331 1.44883 1.25133 0.99074 0.92444
0.95007 1.60720 1.06903 1.00570 1.62054 0.90376 0.91002 0.88986
0.95288 0.98098 0.92357 0.84266 0.89489 0.85876 0.86059 0.82046
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.93 9.85 127.77 1.26 3.19 16
2 N -0.60 -24.11 2.86 -851.14 -2.43 -26.54 16
3 C 0.26 13.56 5.16 85.63 0.44 14.00 16
4 C -0.54 -30.85 9.39 25.60 0.24 -30.61 16
5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16
6 C 0.01 0.50 5.46 84.65 0.46 0.96 16
7 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16
8 Si 0.97 44.55 29.54 68.60 2.03 46.58 16
9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16
10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16
11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16
12 C 0.51 20.11 6.96 87.66 0.61 20.72 16
13 O -0.58 -28.95 15.50 -3.03 -0.05 -28.99 16
14 C 0.07 2.05 2.55 44.87 0.11 2.16 16
15 H 0.14 3.24 6.36 -2.39 -0.02 3.23 16
16 C -0.07 -1.68 6.78 72.80 0.49 -1.19 16
17 S -0.35 -7.73 23.37 -56.49 -1.32 -9.05 16
18 C 0.12 2.38 8.12 127.46 1.03 3.41 16
19 N -0.67 -17.94 6.76 -496.38 -3.35 -21.29 16
20 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16
21 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16
22 H 0.09 1.91 5.96 -2.39 -0.01 1.89 16
23 H 0.03 1.53 8.07 -2.38 -0.02 1.51 16
24 H 0.00 0.05 7.42 -2.39 -0.02 0.04 16
25 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16
26 H 0.14 2.54 7.86 -2.39 -0.02 2.52 16
27 H 0.09 2.20 8.10 -2.39 -0.02 2.18 16
28 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16
29 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16
30 H 0.36 10.60 7.90 -89.69 -0.71 9.89 16
Total: -1.00 -70.51 267.18 0.25 -70.26
By element:
Atomic # 1 Polarization: 11.13 SS G_CDS: 0.44 Total: 11.57 kcal
Atomic # 6 Polarization: 7.98 SS G_CDS: 4.66 Total: 12.64 kcal
Atomic # 7 Polarization: -97.50 SS G_CDS: -5.50 Total: -103.00 kcal
Atomic # 8 Polarization: -28.95 SS G_CDS: -0.05 Total: -28.99 kcal
Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal
Atomic # 16 Polarization: -7.73 SS G_CDS: -1.32 Total: -9.05 kcal
Total: -70.51 0.25 -70.26 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000019833486.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.385 kcal
(2) G-P(sol) polarization free energy of solvation -70.507 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.122 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.257 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.872 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds