Wall clock time and date at job start Mon Mar 30 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46502 * 120.00341 * 2 1 4 4 C 1.50706 * 109.46622 * 90.00315 * 3 2 1 5 5 H 1.08005 * 120.00138 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99722 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00217 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00073 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46845 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47399 * 119.99815 * 8 6 4 11 11 H 1.48498 * 109.47295 * 240.00422 * 8 6 4 12 12 C 1.34776 * 120.00157 * 180.02562 * 2 1 3 13 13 O 1.21285 * 120.00530 * 179.97438 * 12 2 1 14 14 C 1.50709 * 119.99688 * 359.97438 * 12 2 1 15 15 H 1.08996 * 108.77101 * 321.59703 * 14 12 2 16 16 C 1.54064 * 108.81414 * 80.00348 * 14 12 2 17 17 S 1.83698 * 103.49401 * 124.76243 * 16 14 12 18 18 C 1.84107 * 94.87683 * 18.34261 * 17 16 14 19 19 N 1.46603 * 108.81270 * 203.34517 * 14 12 2 20 20 H 1.08995 * 109.47365 * 89.99295 * 1 2 3 21 21 H 1.09003 * 109.47302 * 209.99510 * 1 2 3 22 22 H 1.08998 * 109.47192 * 329.99361 * 1 2 3 23 23 H 1.08996 * 109.47065 * 330.00997 * 3 2 1 24 24 H 1.08994 * 109.47523 * 210.00473 * 3 2 1 25 25 H 0.97000 * 119.99651 * 0.02562 * 7 6 4 26 26 H 1.09005 * 110.61486 * 243.25898 * 16 14 12 27 27 H 1.09001 * 110.62134 * 6.09926 * 16 14 12 28 28 H 1.08993 * 111.13586 * 83.27498 * 18 17 16 29 29 H 1.09000 * 111.13213 * 207.42037 * 18 17 16 30 30 H 1.00903 * 110.99768 * 331.15479 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 1.4209 5 1 2.0981 1.0955 2.2418 6 6 3.1261 2.8777 1.6729 7 7 3.5526 3.6184 0.6733 8 14 3.4369 3.4172 3.4341 9 1 2.8600 2.4165 4.3674 10 1 4.8994 3.5258 3.6678 11 1 2.7989 4.7377 3.6672 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 1 0.5098 -2.3718 0.6409 16 6 0.9170 -2.7757 -1.4366 17 16 1.6057 -4.4462 -1.7681 18 6 1.8830 -4.8558 0.0053 19 7 2.2525 -3.5189 0.5488 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 1.6084 2.0284 -0.5137 24 1 3.1498 1.1384 -0.5139 25 1 3.3902 3.3388 -0.2412 26 1 -0.1716 -2.7918 -1.4900 27 1 1.3236 -2.0447 -2.1354 28 1 0.9708 -5.2303 0.4695 29 1 2.7007 -5.5673 0.1210 30 1 3.2243 -3.3128 0.3723 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:38 Heat of formation + Delta-G solvation = -24.779646 kcal Electronic energy + Delta-G solvation = -14402.326381 eV Core-core repulsion = 11938.031941 eV Total energy + Delta-G solvation = -2464.294440 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.74623 -36.29946 -35.09801 -32.95042 -30.54332 -27.59015 -26.40091 -25.69134 -23.56716 -21.88775 -19.05872 -17.38414 -17.03052 -16.89782 -15.68339 -15.38357 -14.79842 -14.15937 -13.90121 -13.75580 -13.14670 -12.92867 -12.57905 -12.41741 -12.24485 -12.06983 -11.81477 -11.37658 -10.98465 -10.62631 -10.51826 -10.15751 -9.28262 -9.19572 -8.85117 -8.43418 -7.96252 -7.77975 -6.44327 -4.16953 1.60936 2.03021 3.02741 3.41075 3.46007 3.49721 3.59785 3.99443 4.45389 4.50241 4.65003 4.87720 4.95426 5.22836 5.28151 5.31130 5.38048 5.54891 5.70691 6.03058 6.33398 6.68658 6.99100 7.02843 7.22470 7.95282 8.07620 8.36146 8.67679 8.78916 9.52870 10.93348 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.048804 B = 0.006474 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.585371 B = 4324.134985 C = 4496.896345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.590 5.590 3 C 0.235 3.765 4 C -0.608 4.608 5 H 0.053 0.947 6 C 0.020 3.980 7 N -0.909 5.909 8 Si 1.078 2.922 9 H -0.289 1.289 10 H -0.285 1.285 11 H -0.286 1.286 12 C 0.509 3.491 13 O -0.531 6.531 14 C 0.055 3.945 15 H 0.112 0.888 16 C -0.070 4.070 17 S -0.353 6.353 18 C 0.121 3.879 19 N -0.655 5.655 20 H 0.048 0.952 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.024 0.976 24 H 0.035 0.965 25 H 0.268 0.732 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 -12.964 -1.977 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.321 5.321 3 C 0.115 3.885 4 C -0.647 4.647 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.545 5.545 8 Si 0.906 3.094 9 H -0.215 1.215 10 H -0.211 1.211 11 H -0.212 1.212 12 C 0.293 3.707 13 O -0.408 6.408 14 C -0.061 4.061 15 H 0.130 0.870 16 C -0.222 4.222 17 S -0.130 6.130 18 C -0.118 4.118 19 N -0.289 5.289 20 H 0.066 0.934 21 H 0.079 0.921 22 H 0.097 0.903 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.197 -12.421 -1.479 14.431 hybrid contribution -0.790 -0.534 -0.813 1.253 sum -7.987 -12.955 -2.292 15.391 Atomic orbital electron populations 1.21764 0.80987 1.03105 1.00705 1.47901 1.06342 1.07214 1.70693 1.19416 0.92000 0.78634 0.98439 1.22285 1.40935 1.09659 0.91795 0.92834 1.25837 0.93193 0.93264 1.06124 1.70754 1.44013 1.39637 1.00118 0.83420 0.76802 0.75527 0.73670 1.21536 1.21149 1.21247 1.19990 0.88015 0.84815 0.77858 1.90672 1.13568 1.86403 1.50165 1.22401 0.97782 0.91963 0.93968 0.87006 1.24706 1.03936 0.94872 0.98636 1.88292 1.84725 1.21237 1.18792 1.25332 1.05214 0.93971 0.87314 1.61074 1.10836 0.99340 1.57678 0.93358 0.92055 0.90309 0.95800 0.94729 0.92184 0.87859 0.87652 0.87574 0.86518 0.80400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.01 59.84 0.60 1.76 16 2 N -0.59 -12.06 2.86 -182.96 -0.52 -12.58 16 3 C 0.23 5.98 4.47 -5.19 -0.02 5.95 16 4 C -0.61 -17.23 9.39 -34.44 -0.32 -17.55 16 5 H 0.05 1.54 7.81 -52.48 -0.41 1.13 16 6 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 7 N -0.91 -27.52 13.65 55.43 0.76 -26.76 16 8 Si 1.08 25.55 29.90 -169.99 -5.08 20.46 16 9 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.51 10.23 6.58 -10.98 -0.07 10.15 16 13 O -0.53 -12.97 15.18 5.55 0.08 -12.89 16 14 C 0.05 0.81 2.85 -68.47 -0.19 0.61 16 15 H 0.11 1.46 6.19 -51.93 -0.32 1.14 16 16 C -0.07 -0.90 6.79 37.71 0.26 -0.64 16 17 S -0.35 -4.67 23.45 -107.50 -2.52 -7.19 16 18 C 0.12 1.34 8.23 61.21 0.50 1.84 16 19 N -0.65 -9.44 6.90 -108.57 -0.75 -10.19 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.74 5.90 -51.93 -0.31 0.43 16 22 H 0.08 1.22 8.07 -51.93 -0.42 0.81 16 23 H 0.02 0.60 7.94 -51.93 -0.41 0.19 16 24 H 0.03 0.98 7.29 -51.93 -0.38 0.61 16 25 H 0.27 8.03 7.22 -40.82 -0.29 7.74 16 26 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.11 1.48 7.66 -51.93 -0.40 1.08 16 28 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.37 6.09 7.31 -39.29 -0.29 5.81 16 LS Contribution 264.96 15.07 3.99 3.99 Total: -1.00 -33.10 264.96 -7.11 -40.21 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -3.71 Total: 2.33 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 0.65 Total: 2.62 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.52 Total: -49.54 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.46 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -2.52 Total: -7.19 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.10 -7.11 -40.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.427 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds