Wall clock time and date at job start Mon Mar 30 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46502 * 120.00341 * 2 1 4 4 C 1.50706 * 109.46622 * 90.00315 * 3 2 1 5 5 H 1.08005 * 120.00138 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99722 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00217 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00073 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46845 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47399 * 119.99815 * 8 6 4 11 11 H 1.48498 * 109.47295 * 240.00422 * 8 6 4 12 12 C 1.34776 * 120.00157 * 180.02562 * 2 1 3 13 13 O 1.21285 * 120.00530 * 179.97438 * 12 2 1 14 14 C 1.50709 * 119.99688 * 359.97438 * 12 2 1 15 15 H 1.08996 * 108.77101 * 321.59703 * 14 12 2 16 16 C 1.54064 * 108.81414 * 80.00348 * 14 12 2 17 17 S 1.83698 * 103.49401 * 124.76243 * 16 14 12 18 18 C 1.84107 * 94.87683 * 18.34261 * 17 16 14 19 19 N 1.46603 * 108.81270 * 203.34517 * 14 12 2 20 20 H 1.08995 * 109.47365 * 89.99295 * 1 2 3 21 21 H 1.09003 * 109.47302 * 209.99510 * 1 2 3 22 22 H 1.08998 * 109.47192 * 329.99361 * 1 2 3 23 23 H 1.08996 * 109.47065 * 330.00997 * 3 2 1 24 24 H 1.08994 * 109.47523 * 210.00473 * 3 2 1 25 25 H 0.97000 * 119.99651 * 0.02562 * 7 6 4 26 26 H 1.09005 * 110.61486 * 243.25898 * 16 14 12 27 27 H 1.09001 * 110.62134 * 6.09926 * 16 14 12 28 28 H 1.08993 * 111.13586 * 83.27498 * 18 17 16 29 29 H 1.09000 * 111.13213 * 207.42037 * 18 17 16 30 30 H 1.00903 * 110.99768 * 331.15479 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 1.4209 5 1 2.0981 1.0955 2.2418 6 6 3.1261 2.8777 1.6729 7 7 3.5526 3.6184 0.6733 8 14 3.4369 3.4172 3.4341 9 1 2.8600 2.4165 4.3674 10 1 4.8994 3.5258 3.6678 11 1 2.7989 4.7377 3.6672 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 1 0.5098 -2.3718 0.6409 16 6 0.9170 -2.7757 -1.4366 17 16 1.6057 -4.4462 -1.7681 18 6 1.8830 -4.8558 0.0053 19 7 2.2525 -3.5189 0.5488 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 1.6084 2.0284 -0.5137 24 1 3.1498 1.1384 -0.5139 25 1 3.3902 3.3388 -0.2412 26 1 -0.1716 -2.7918 -1.4900 27 1 1.3236 -2.0447 -2.1354 28 1 0.9708 -5.2303 0.4695 29 1 2.7007 -5.5673 0.1210 30 1 3.2243 -3.3128 0.3723 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:38 Heat of formation + Delta-G solvation = -50.117098 kcal Electronic energy + Delta-G solvation = -14403.425095 eV Core-core repulsion = 11938.031941 eV Total energy + Delta-G solvation = -2465.393155 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.26074 -37.60001 -36.77676 -35.01238 -31.73553 -29.35395 -27.63500 -27.02688 -25.39606 -23.34250 -20.49959 -19.19178 -18.59181 -18.15382 -17.16318 -16.73674 -16.17586 -15.69491 -15.41082 -15.16733 -14.49022 -14.32491 -13.93765 -13.89919 -13.64067 -13.35405 -13.27242 -13.02791 -12.83623 -12.49740 -11.96868 -11.58288 -11.22277 -10.87107 -10.63919 -9.92341 -9.57059 -8.96982 -8.72191 -6.48250 0.63556 1.05650 1.48586 1.54466 1.59226 1.75461 2.03734 2.51712 2.86587 3.07597 3.29398 3.38716 3.84438 4.06818 4.25202 4.36015 4.40316 4.45174 4.56996 4.68053 4.86554 4.88750 5.30755 5.45053 5.76611 5.78906 6.10241 6.42031 6.51363 7.12807 7.32295 8.63391 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.048804 B = 0.006474 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.585371 B = 4324.134985 C = 4496.896345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.597 5.597 3 C 0.245 3.755 4 C -0.617 4.617 5 H 0.046 0.954 6 C -0.031 4.031 7 N -0.932 5.932 8 Si 1.123 2.877 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.499 3.501 13 O -0.587 6.587 14 C 0.071 3.929 15 H 0.140 0.860 16 C -0.062 4.062 17 S -0.386 6.386 18 C 0.133 3.867 19 N -0.666 5.666 20 H 0.079 0.921 21 H 0.098 0.902 22 H 0.069 0.931 23 H 0.024 0.976 24 H -0.006 1.006 25 H 0.256 0.744 26 H 0.141 0.859 27 H 0.088 0.912 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 -14.325 -0.911 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.327 5.327 3 C 0.123 3.877 4 C -0.655 4.655 5 H 0.064 0.936 6 C -0.229 4.229 7 N -0.569 5.569 8 Si 0.945 3.055 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.286 3.714 13 O -0.467 6.467 14 C -0.044 4.044 15 H 0.157 0.843 16 C -0.213 4.213 17 S -0.164 6.164 18 C -0.105 4.105 19 N -0.299 5.299 20 H 0.097 0.903 21 H 0.116 0.884 22 H 0.088 0.912 23 H 0.041 0.959 24 H 0.012 0.988 25 H 0.065 0.935 26 H 0.159 0.841 27 H 0.106 0.894 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.250 -13.813 -0.431 16.629 hybrid contribution -0.177 -0.167 -1.193 1.218 sum -9.427 -13.979 -1.624 16.939 Atomic orbital electron populations 1.22107 0.77299 1.04498 1.03180 1.47930 1.08611 1.05688 1.70500 1.18937 0.90986 0.81196 0.96600 1.22566 1.40604 1.09551 0.92815 0.93564 1.27355 0.92578 0.93623 1.09377 1.70875 1.45549 1.40435 1.00026 0.82852 0.76996 0.76344 0.69352 1.19870 1.20894 1.19395 1.20985 0.87758 0.86381 0.76250 1.90639 1.16273 1.87419 1.52416 1.22403 0.97455 0.88685 0.95877 0.84301 1.24721 1.05955 0.93923 0.96676 1.88463 1.85187 1.21570 1.21159 1.25581 1.07218 0.92524 0.85185 1.61173 1.09951 1.00671 1.58118 0.90297 0.88376 0.91216 0.95855 0.98826 0.93463 0.84053 0.89372 0.84715 0.84777 0.81981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.92 10.01 127.77 1.28 3.19 16 2 N -0.60 -24.18 2.86 -851.14 -2.43 -26.62 16 3 C 0.24 12.84 4.47 85.63 0.38 13.23 16 4 C -0.62 -35.49 9.39 25.60 0.24 -35.25 16 5 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 6 C -0.03 -1.80 5.46 84.65 0.46 -1.34 16 7 N -0.93 -57.63 13.65 21.45 0.29 -57.33 16 8 Si 1.12 51.05 29.90 68.60 2.05 53.10 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 C 0.50 19.96 6.58 87.66 0.58 20.54 16 13 O -0.59 -29.65 15.18 -3.04 -0.05 -29.70 16 14 C 0.07 1.93 2.85 44.59 0.13 2.06 16 15 H 0.14 3.02 6.19 -2.39 -0.01 3.00 16 16 C -0.06 -1.41 6.79 72.34 0.49 -0.92 16 17 S -0.39 -9.37 23.45 -56.49 -1.32 -10.70 16 18 C 0.13 2.54 8.23 127.29 1.05 3.58 16 19 N -0.67 -17.90 6.90 -497.39 -3.43 -21.33 16 20 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.10 1.92 5.90 -2.39 -0.01 1.91 16 22 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 23 H 0.02 1.22 7.94 -2.39 -0.02 1.20 16 24 H -0.01 -0.38 7.29 -2.39 -0.02 -0.40 16 25 H 0.26 15.97 7.22 -92.71 -0.67 15.30 16 26 H 0.14 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.09 2.36 7.66 -2.39 -0.02 2.34 16 28 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.36 11.62 7.31 -89.69 -0.66 10.97 16 Total: -1.00 -74.69 264.96 0.31 -74.39 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.59 Total: 13.10 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 4.61 Total: 5.08 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -5.57 Total: -105.28 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.05 Total: -29.70 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.10 kcal Atomic # 16 Polarization: -9.37 SS G_CDS: -1.32 Total: -10.70 kcal Total: -74.69 0.31 -74.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.271 kcal (2) G-P(sol) polarization free energy of solvation -74.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds