Wall clock time and date at job start Mon Mar 30 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47217 * 2 1 4 4 O 1.42964 * 109.47485 * 120.00106 * 2 1 3 5 5 C 1.43090 * 113.77033 * 61.20307 * 4 2 1 6 6 H 1.08999 * 109.56095 * 298.02639 * 5 4 2 7 7 C 1.50705 * 109.55741 * 177.81313 * 5 4 2 8 8 H 1.08002 * 119.99672 * 239.99707 * 7 5 4 9 9 C 1.37868 * 120.00229 * 60.00203 * 7 5 4 10 10 N 1.31522 * 120.00041 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 120.00222 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47024 * 90.00076 * 11 9 7 13 13 H 1.48500 * 109.47471 * 210.00105 * 11 9 7 14 14 H 1.48503 * 109.47096 * 330.00297 * 11 9 7 15 15 C 1.53261 * 108.94344 * 57.97564 * 5 4 2 16 16 C 1.53268 * 108.84263 * 305.47604 * 15 5 4 17 17 H 1.09000 * 109.55327 * 294.68621 * 16 15 5 18 18 C 1.52997 * 109.55641 * 174.36260 * 16 15 5 19 19 C 1.50702 * 109.46964 * 175.54223 * 18 16 15 20 20 O 1.20829 * 120.00012 * 359.97438 * 19 18 16 21 21 O 1.34223 * 120.00149 * 179.97438 * 19 18 16 22 22 O 1.42975 * 109.47364 * 239.99929 * 2 1 3 23 23 H 1.09004 * 109.47217 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47282 * 299.99963 * 1 2 3 25 25 H 1.08998 * 109.47455 * 60.00551 * 1 2 3 26 26 H 0.96994 * 119.99818 * 179.97438 * 10 9 7 27 27 H 1.08997 * 109.57211 * 65.28162 * 15 5 4 28 28 H 1.09000 * 109.57729 * 185.54208 * 15 5 4 29 29 H 1.09002 * 109.47039 * 295.53910 * 18 16 15 30 30 H 1.08998 * 109.47283 * 55.54096 * 18 16 15 31 31 H 0.96704 * 117.00376 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0066 -0.6739 1.1673 5 6 1.6041 -2.0448 1.2465 6 1 0.5169 -2.1037 1.2957 7 6 2.1998 -2.6750 2.4791 8 1 2.8616 -3.5234 2.3857 9 6 1.8998 -2.1686 3.7258 10 7 1.0942 -1.1352 3.8395 11 14 2.6375 -2.9502 5.2536 12 1 3.9303 -2.2922 5.5712 13 1 1.7032 -2.7828 6.3957 14 1 2.8655 -4.3970 5.0086 15 6 2.1044 -2.7830 0.0000 16 6 1.6041 -2.0448 -1.2466 17 1 0.5167 -2.1038 -1.2937 18 6 2.2088 -2.6847 -2.4978 19 6 1.6318 -2.0293 -3.7261 20 8 0.8198 -1.1418 -3.6123 21 8 2.0198 -2.4314 -4.9464 22 8 2.0066 -0.6740 -1.1674 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 0.8829 -0.7793 4.7166 27 1 3.1942 -2.8027 0.0000 28 1 1.7206 -3.8032 0.0011 29 1 3.2904 -2.5500 -2.4883 30 1 1.9754 -3.7494 -2.5105 31 1 1.6217 -1.9815 -5.7042 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034441182.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:25 Heat of formation + Delta-G solvation = -217.075877 kcal Electronic energy + Delta-G solvation = -16934.281549 eV Core-core repulsion = 13986.602897 eV Total energy + Delta-G solvation = -2947.678653 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.43996 -40.52889 -37.12648 -36.47025 -35.05773 -33.90937 -31.07158 -30.52696 -27.73180 -24.68414 -24.28030 -22.00352 -20.63912 -19.05777 -18.75505 -18.08798 -17.51225 -17.07961 -16.89627 -16.32354 -16.23494 -15.43105 -15.09532 -14.40883 -13.96327 -13.83220 -13.58999 -13.07192 -12.91821 -12.85741 -12.74301 -12.49721 -12.43218 -12.14761 -12.01372 -11.75957 -11.54996 -11.31290 -10.73437 -10.39128 -10.00220 -8.15608 -6.36224 1.31061 1.43199 1.44941 1.55003 2.16120 2.41652 2.76107 3.02664 3.64932 3.74922 3.99293 4.06926 4.17564 4.22770 4.47199 4.51663 4.60703 4.71278 4.79809 4.86464 4.96265 5.09577 5.17610 5.50162 5.68667 5.75205 6.12152 6.18162 6.63877 7.06944 7.08515 7.39399 8.92437 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.048562 B = 0.007128 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.443339 B = 3927.361720 C = 4332.865985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.232 3.768 3 H 0.128 0.872 4 O -0.397 6.397 5 C 0.209 3.791 6 H -0.005 1.005 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.023 3.977 10 N -0.898 5.898 11 Si 0.964 3.036 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.259 1.259 15 C -0.161 4.161 16 C 0.095 3.905 17 H 0.055 0.945 18 C -0.101 4.101 19 C 0.485 3.515 20 O -0.544 6.544 21 O -0.511 6.511 22 O -0.400 6.400 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.262 0.738 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.152 0.848 31 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 -3.702 -12.961 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.137 3.863 3 H 0.145 0.855 4 O -0.318 6.318 5 C 0.154 3.846 6 H 0.012 0.988 7 C -0.589 4.589 8 H 0.089 0.911 9 C -0.179 4.179 10 N -0.535 5.535 11 Si 0.789 3.211 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.183 1.183 15 C -0.199 4.199 16 C 0.037 3.963 17 H 0.073 0.927 18 C -0.138 4.138 19 C 0.328 3.672 20 O -0.434 6.434 21 O -0.325 6.325 22 O -0.322 6.322 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.144 0.856 30 H 0.170 0.830 31 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 1.231 -3.371 -12.490 12.996 hybrid contribution -0.518 0.214 0.516 0.762 sum 0.713 -3.157 -11.975 12.404 Atomic orbital electron populations 1.22612 0.97249 1.02250 1.02332 1.23502 0.91935 0.94296 0.76601 0.85464 1.88461 1.75143 1.27221 1.40932 1.19716 0.93318 0.78677 0.92937 0.98770 1.21445 1.31294 1.15136 0.91032 0.91092 1.25963 0.94542 0.94845 1.02581 1.70168 1.34904 1.23919 1.24485 0.85482 0.78104 0.79311 0.78249 1.20301 1.20725 1.18293 1.22734 1.01990 1.00546 0.94616 1.22003 0.98042 0.82115 0.94107 0.92697 1.21497 1.03798 1.02372 0.86094 1.23518 0.78269 0.79997 0.85372 1.90733 1.34022 1.30972 1.87638 1.84491 1.67461 1.63794 1.16770 1.88005 1.76228 1.23995 1.43923 0.93226 0.91989 0.90506 0.92916 0.91216 0.89189 0.85569 0.83012 0.71293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.63 8.83 71.98 0.64 -7.00 16 2 C 0.23 10.20 4.67 71.98 0.34 10.54 16 3 H 0.13 5.15 8.14 -2.38 -0.02 5.13 16 4 O -0.40 -21.23 9.75 -126.22 -1.23 -22.46 16 5 C 0.21 10.75 2.24 29.94 0.07 10.82 16 6 H -0.01 -0.29 6.53 -2.39 -0.02 -0.31 16 7 C -0.55 -30.69 8.80 25.60 0.23 -30.46 16 8 H 0.07 3.74 7.75 -2.91 -0.02 3.72 16 9 C 0.02 1.31 5.40 84.65 0.46 1.77 16 10 N -0.90 -53.46 12.84 21.45 0.28 -53.18 16 11 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 14 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 15 C -0.16 -6.38 4.87 30.77 0.15 -6.23 16 16 C 0.09 3.35 1.92 30.68 0.06 3.41 16 17 H 0.06 2.04 6.36 -2.39 -0.02 2.02 16 18 C -0.10 -2.50 5.53 29.85 0.17 -2.33 16 19 C 0.48 12.60 8.21 71.24 0.58 13.18 16 20 O -0.54 -18.56 16.19 27.00 0.44 -18.13 16 21 O -0.51 -9.28 13.42 -51.35 -0.69 -9.97 16 22 O -0.40 -16.33 9.60 -120.77 -1.16 -17.49 16 23 H 0.05 2.10 5.12 -2.38 -0.01 2.09 16 24 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.15 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.43 4.14 9.10 -74.05 -0.67 3.46 16 Total: -1.00 -71.77 263.29 2.81 -68.96 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.47 Total: 13.22 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 2.68 Total: -6.31 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.28 Total: -53.18 kcal Atomic # 8 Polarization: -65.40 SS G_CDS: -2.64 Total: -68.04 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -71.77 2.81 -68.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034441182.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.117 kcal (2) G-P(sol) polarization free energy of solvation -71.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds