Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.43169 * 2 1 4 4 O 1.42885 * 109.47448 * 240.01783 * 2 1 3 5 5 C 1.46359 * 107.58039 * 257.30695 * 4 2 1 6 6 H 1.08999 * 114.29244 * 100.18173 * 5 4 2 7 7 C 1.54165 * 108.16150 * 227.19645 * 5 4 2 8 8 H 1.09007 * 109.75187 * 350.31943 * 7 5 4 9 9 O 1.42903 * 109.75231 * 229.64201 * 7 5 4 10 10 O 1.43044 * 108.07018 * 109.98041 * 7 5 4 11 11 C 1.43503 * 108.94886 * 339.73496 * 10 7 5 12 12 H 1.09004 * 110.22042 * 272.14483 * 11 10 7 13 13 C 1.50701 * 110.22093 * 150.30046 * 11 10 7 14 14 H 1.07996 * 120.00271 * 241.45150 * 13 11 10 15 15 C 1.37878 * 120.00036 * 61.45427 * 13 11 10 16 16 N 1.31518 * 119.99985 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00262 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46783 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47055 * 119.99780 * 17 15 13 20 20 H 1.48500 * 109.46633 * 239.99723 * 17 15 13 21 21 C 1.53641 * 105.61418 * 31.18342 * 11 10 7 22 22 H 1.09004 * 111.71745 * 91.60064 * 21 11 10 23 23 O 1.42803 * 111.11183 * 217.05707 * 21 11 10 24 24 H 1.08997 * 109.47231 * 300.01875 * 1 2 3 25 25 H 1.09004 * 109.47253 * 60.01940 * 1 2 3 26 26 H 1.09006 * 109.47600 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46857 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.46930 * 299.97930 * 3 2 1 29 29 H 1.09000 * 109.47066 * 59.98560 * 3 2 1 30 30 H 0.96700 * 114.00311 * 179.97438 * 9 7 5 31 31 H 0.96998 * 120.00527 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0389 1.4428 0.0000 4 8 2.0063 -0.6732 -1.1668 5 6 2.4427 -2.0094 -0.7591 6 1 1.7219 -2.7998 -0.9682 7 6 3.8285 -2.2729 -1.3810 8 1 4.0650 -1.4881 -2.0997 9 8 3.8306 -3.5432 -2.0354 10 8 4.7956 -2.2705 -0.3269 11 6 4.2494 -1.5777 0.8049 12 1 4.4567 -0.5103 0.7293 13 6 4.8272 -2.1305 2.0823 14 1 4.1783 -2.5853 2.8161 15 6 6.1842 -2.0553 2.3144 16 7 6.9745 -1.5018 1.4207 17 14 6.9005 -2.7411 3.8975 18 1 5.8089 -3.3070 4.7302 19 1 7.8820 -3.8079 3.5754 20 1 7.5798 -1.6528 4.6455 21 6 2.7347 -1.8296 0.7525 22 1 2.4523 -2.7112 1.3280 23 8 2.0064 -0.6733 1.1671 24 1 -0.3633 0.5141 0.8898 25 1 -0.3634 0.5135 -0.8902 26 1 -0.3634 -1.0277 0.0005 27 1 3.1289 1.4435 0.0005 28 1 1.6755 1.9562 -0.8901 29 1 1.6750 1.9565 0.8899 30 1 4.6743 -3.7712 -2.4493 31 1 7.9292 -1.4492 1.5838 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036420435.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -208.729487 kcal Electronic energy + Delta-G solvation = -17396.438775 eV Core-core repulsion = 14449.122049 eV Total energy + Delta-G solvation = -2947.316726 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.20285 -39.20583 -36.88397 -36.06961 -34.60318 -33.80497 -30.49577 -29.52691 -28.36181 -26.24814 -23.15459 -22.77782 -22.21948 -19.53071 -18.77935 -17.83273 -17.22899 -16.84581 -16.58659 -16.38006 -15.86407 -15.45626 -14.91267 -14.53516 -14.29015 -13.85981 -13.53175 -13.36433 -13.20060 -13.05533 -12.94162 -12.83745 -12.64987 -12.36217 -12.22942 -11.94183 -11.61395 -11.08839 -10.76990 -10.52588 -10.21641 -8.24495 -6.46775 1.40036 1.40659 1.54300 2.03268 2.36210 2.62141 3.00719 3.03741 3.34130 3.45264 3.72199 3.90228 3.91110 4.10876 4.17166 4.32772 4.40835 4.65068 4.68537 4.74749 4.77427 4.93208 5.08537 5.22023 5.28122 5.61711 5.91216 6.11343 6.41117 6.62188 6.76546 7.29012 8.84398 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.009998 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.898731 B = 2799.962158 C = 3326.565526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.236 3.764 3 C -0.155 4.155 4 O -0.382 6.382 5 C 0.042 3.958 6 H 0.138 0.862 7 C 0.242 3.758 8 H 0.067 0.933 9 O -0.562 6.562 10 O -0.395 6.395 11 C 0.206 3.794 12 H 0.002 0.998 13 C -0.554 4.554 14 H 0.071 0.929 15 C 0.024 3.976 16 N -0.900 5.900 17 Si 0.970 3.030 18 H -0.260 1.260 19 H -0.276 1.276 20 H -0.274 1.274 21 C 0.042 3.958 22 H 0.118 0.882 23 O -0.374 6.374 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.401 0.599 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.126 1.653 -3.878 10.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.160 3.840 3 C -0.213 4.213 4 O -0.303 6.303 5 C -0.015 4.015 6 H 0.155 0.845 7 C 0.144 3.856 8 H 0.084 0.916 9 O -0.372 6.372 10 O -0.317 6.317 11 C 0.151 3.849 12 H 0.020 0.980 13 C -0.591 4.591 14 H 0.089 0.911 15 C -0.179 4.179 16 N -0.536 5.536 17 Si 0.793 3.207 18 H -0.184 1.184 19 H -0.202 1.202 20 H -0.200 1.200 21 C -0.016 4.016 22 H 0.136 0.864 23 O -0.295 6.295 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.252 0.748 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.397 1.788 -3.735 11.192 hybrid contribution 1.234 -0.239 0.334 1.301 sum -9.163 1.549 -3.402 9.896 Atomic orbital electron populations 1.22349 0.91012 1.03718 1.04604 1.23791 0.94898 0.91782 0.73551 1.22187 1.01165 0.93269 1.04634 1.89032 1.83438 1.25691 1.32168 1.25072 0.96715 0.86645 0.93070 0.84471 1.23326 0.87872 0.85865 0.88496 0.91612 1.86380 1.40439 1.37731 1.72677 1.88822 1.39770 1.78106 1.25007 1.20427 0.87609 0.91739 0.85149 0.98033 1.21396 0.93817 1.42174 1.01750 0.91121 1.26010 0.97512 0.94113 1.00237 1.70169 1.04708 1.42684 1.36076 0.85344 0.78471 0.78239 0.78607 1.18411 1.20193 1.19977 1.24552 0.94052 0.89273 0.93755 0.86404 1.88468 1.71141 1.39213 1.30682 0.89374 0.88825 0.91908 0.94181 0.88554 0.88961 0.74780 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 9.21 71.98 0.66 -3.27 16 2 C 0.24 7.98 1.61 30.59 0.05 8.03 16 3 C -0.16 -4.72 9.21 71.98 0.66 -4.06 16 4 O -0.38 -14.11 10.35 -126.21 -1.31 -15.42 16 5 C 0.04 1.63 4.69 31.67 0.15 1.78 16 6 H 0.14 4.61 8.07 -2.39 -0.02 4.59 16 7 C 0.24 10.24 4.74 72.38 0.34 10.59 16 8 H 0.07 2.74 7.90 -2.38 -0.02 2.72 16 9 O -0.56 -20.57 13.54 -126.25 -1.71 -22.28 16 10 O -0.40 -21.16 10.48 -126.25 -1.32 -22.48 16 11 C 0.21 11.14 3.00 30.06 0.09 11.23 16 12 H 0.00 0.12 8.09 -2.39 -0.02 0.10 16 13 C -0.55 -31.80 8.77 25.60 0.22 -31.58 16 14 H 0.07 3.90 7.64 -2.91 -0.02 3.88 16 15 C 0.02 1.38 5.42 84.65 0.46 1.83 16 16 N -0.90 -54.22 12.93 21.45 0.28 -53.94 16 17 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 C 0.04 1.84 4.07 31.50 0.13 1.97 16 22 H 0.12 5.02 7.84 -2.39 -0.02 5.00 16 23 O -0.37 -15.43 10.39 -126.21 -1.31 -16.74 16 24 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.09 1.89 8.14 -2.38 -0.02 1.88 16 26 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.40 11.66 9.12 -74.06 -0.68 10.99 16 31 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -68.74 265.10 -0.12 -68.86 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.46 Total: 19.56 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 2.77 Total: -3.48 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.28 Total: -53.94 kcal Atomic # 8 Polarization: -71.26 SS G_CDS: -5.65 Total: -76.92 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.74 -0.12 -68.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036420435.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.874 kcal (2) G-P(sol) polarization free energy of solvation -68.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds