Wall clock time and date at job start Mon Mar 30 2020 03:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 119.99917 * 2 1 4 4 H 1.48503 * 109.46855 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46683 * 120.00175 * 3 2 1 6 6 H 1.48494 * 109.46980 * 240.00084 * 3 2 1 7 7 C 1.37880 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99329 * 186.64465 * 7 2 1 9 9 C 1.50698 * 120.00162 * 6.63874 * 7 2 1 10 10 H 1.09003 * 109.46901 * 32.89021 * 9 7 2 11 11 C 1.50697 * 109.47040 * 152.89070 * 9 7 2 12 12 O 1.20757 * 120.00075 * 93.53873 * 11 9 7 13 13 C 1.50706 * 119.99556 * 273.53947 * 11 9 7 14 14 C 1.53000 * 117.49781 * 223.14788 * 13 11 9 15 15 C 1.53001 * 117.49384 * 154.52610 * 13 11 9 16 16 C 1.50701 * 109.46989 * 272.89003 * 9 7 2 17 17 C 1.38235 * 120.00094 * 299.72684 * 16 9 7 18 18 C 1.38239 * 119.99898 * 179.81391 * 17 16 9 19 19 C 1.38231 * 119.99807 * 0.39800 * 18 17 16 20 20 C 1.38232 * 120.00134 * 359.84980 * 19 18 17 21 21 C 1.38231 * 120.00163 * 359.96396 * 20 19 18 22 22 H 0.96993 * 119.99862 * 174.82701 * 1 2 3 23 23 H 1.09003 * 115.55284 * 8.86072 * 13 11 9 24 24 H 1.08999 * 117.49456 * 0.02562 * 14 13 11 25 25 H 1.08992 * 117.50077 * 145.02662 * 14 13 11 26 26 H 1.08999 * 117.49935 * 214.97815 * 15 13 11 27 27 H 1.09004 * 117.50160 * 0.02562 * 15 13 11 28 28 H 1.08000 * 119.99456 * 359.97438 * 17 16 9 29 29 H 1.07997 * 119.99350 * 180.22590 * 18 17 16 30 30 H 1.08002 * 119.99651 * 179.84137 * 19 18 17 31 31 H 1.08001 * 119.99771 * 179.97438 * 20 19 18 32 32 H 1.08002 * 119.99870 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0791 -1.1972 0.1077 9 6 1.2587 -2.4947 -0.1520 10 1 0.3899 -2.3428 -0.7925 11 6 2.1665 -3.5251 -0.7727 12 8 2.8001 -4.2741 -0.0687 13 6 2.2835 -3.6205 -2.2722 14 6 2.2816 -5.0188 -2.8933 15 6 3.5766 -4.2053 -2.8440 16 6 0.8061 -2.9750 1.2029 17 6 1.7381 -3.2427 2.1881 18 6 1.3227 -3.6795 3.4321 19 6 -0.0241 -3.8565 3.6882 20 6 -0.9557 -3.5937 2.7014 21 6 -0.5406 -3.1532 1.4587 22 1 -0.4849 -0.8366 -0.0757 23 1 1.8022 -2.8195 -2.8333 24 1 2.1953 -5.8695 -2.2174 25 1 1.7989 -5.1380 -3.8632 26 1 3.9457 -3.7894 -3.7814 27 1 4.3424 -4.5214 -2.1356 28 1 2.7906 -3.1080 1.9866 29 1 2.0507 -3.8851 4.2029 30 1 -0.3484 -4.2002 4.6594 31 1 -2.0079 -3.7324 2.9015 32 1 -1.2685 -2.9483 0.6875 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055026390.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:12 Heat of formation + Delta-G solvation = 0.124128 kcal Electronic energy + Delta-G solvation = -15655.279955 eV Core-core repulsion = 13160.161815 eV Total energy + Delta-G solvation = -2495.118140 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.45739 -37.96807 -35.54743 -33.96103 -30.89114 -30.03964 -27.75596 -24.46250 -23.00042 -22.16652 -21.67340 -20.43513 -18.67909 -17.11886 -16.06464 -15.82794 -14.86135 -14.37395 -14.08764 -13.83758 -13.57665 -13.26586 -12.52718 -12.39763 -12.24348 -11.93198 -11.64989 -11.30989 -10.91894 -10.83514 -10.37723 -10.32018 -10.20357 -10.07957 -10.05559 -9.02041 -8.75631 -8.48467 -8.04396 -7.65748 -6.56531 -4.30224 2.24956 2.30052 2.72519 3.36669 3.38344 3.56525 4.25104 4.41642 4.56340 4.83512 5.15145 5.18796 5.29186 5.58194 5.63535 5.70095 5.78649 5.83649 5.97184 6.10472 6.26402 6.33397 6.40127 6.45275 6.51786 6.63648 6.89235 6.96901 7.26884 7.33962 7.61547 7.81006 7.94841 8.19823 8.45999 8.64292 9.40147 10.82696 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.013976 C = 0.008266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.125022 B = 2002.963131 C = 3386.661792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.031 3.969 3 Si 1.070 2.930 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.584 4.584 8 H 0.057 0.943 9 C 0.023 3.977 10 H 0.064 0.936 11 C 0.404 3.596 12 O -0.481 6.481 13 C -0.204 4.204 14 C -0.160 4.160 15 C -0.157 4.157 16 C -0.036 4.036 17 C -0.080 4.080 18 C -0.135 4.135 19 C -0.146 4.146 20 C -0.130 4.130 21 C -0.126 4.126 22 H 0.273 0.727 23 H 0.123 0.877 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.339 -6.019 -1.848 6.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.176 4.176 3 Si 0.897 3.103 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.622 4.622 8 H 0.075 0.925 9 C 0.004 3.996 10 H 0.082 0.918 11 C 0.283 3.717 12 O -0.357 6.357 13 C -0.223 4.223 14 C -0.197 4.197 15 C -0.194 4.194 16 C -0.037 4.037 17 C -0.098 4.098 18 C -0.153 4.153 19 C -0.165 4.165 20 C -0.149 4.149 21 C -0.144 4.144 22 H 0.085 0.915 23 H 0.141 0.859 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.135 0.865 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.454 -4.764 -1.414 5.178 hybrid contribution 0.065 -1.442 -0.065 1.445 sum 1.519 -6.207 -1.479 6.559 Atomic orbital electron populations 1.70792 1.06791 1.31495 1.43643 1.25901 0.96389 1.02552 0.92769 0.83524 0.74989 0.74963 0.76860 1.20540 1.21210 1.21072 1.21454 0.94785 0.89104 1.56815 0.92505 1.18491 0.96428 0.94268 0.90413 0.91850 1.24104 0.79240 0.80153 0.88239 1.90246 1.40988 1.39853 1.64605 1.22915 1.04037 0.98431 0.96918 1.22866 1.01490 0.93441 1.01901 1.22845 0.91050 1.03062 1.02400 1.20355 0.92484 0.93048 0.97774 1.20926 0.99823 0.97023 0.92061 1.21023 0.95469 1.01771 0.97054 1.20839 0.93505 1.03542 0.98571 1.20901 0.98458 1.01479 0.94017 1.20991 0.95669 1.00795 0.96951 0.91489 0.85900 0.88627 0.88424 0.88473 0.88299 0.86483 0.87383 0.87509 0.87361 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.63 55.43 0.76 -24.44 16 2 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 3 Si 1.07 24.04 29.91 -169.99 -5.08 18.96 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.58 -15.46 7.92 -34.44 -0.27 -15.73 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.02 0.56 1.88 -94.08 -0.18 0.39 16 10 H 0.06 1.55 6.60 -51.93 -0.34 1.21 16 11 C 0.40 8.92 5.98 -29.03 -0.17 8.74 16 12 O -0.48 -11.26 14.61 6.00 0.09 -11.17 16 13 C -0.20 -3.69 6.12 -91.77 -0.56 -4.26 16 14 C -0.16 -2.37 10.14 -26.73 -0.27 -2.64 16 15 C -0.16 -2.41 10.05 -26.73 -0.27 -2.67 16 16 C -0.04 -0.85 4.57 -104.62 -0.48 -1.33 16 17 C -0.08 -1.85 8.02 -39.58 -0.32 -2.16 16 18 C -0.14 -2.71 10.05 -39.58 -0.40 -3.11 16 19 C -0.15 -2.74 10.05 -39.59 -0.40 -3.14 16 20 C -0.13 -2.53 10.05 -39.59 -0.40 -2.93 16 21 C -0.13 -2.74 9.19 -39.59 -0.36 -3.11 16 22 H 0.27 7.56 6.13 -40.82 -0.25 7.31 16 23 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 24 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.10 1.60 7.90 -51.93 -0.41 1.19 16 28 H 0.12 2.79 7.31 -52.49 -0.38 2.41 16 29 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.11 2.29 7.88 -52.49 -0.41 1.87 16 LS Contribution 279.30 15.07 4.21 4.21 Total: -1.00 -29.44 279.30 -8.17 -37.61 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -3.97 Total: 6.05 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: -4.17 Total: -31.21 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.76 Total: -24.44 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.08 Total: 18.96 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.44 -8.17 -37.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055026390.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.732 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds