Wall clock time and date at job start Mon Mar 30 2020 03:26:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86805 * 119.99917 * 2 1
4 4 H 1.48503 * 109.46855 * 0.02562 * 3 2 1
5 5 H 1.48500 * 109.46683 * 120.00175 * 3 2 1
6 6 H 1.48494 * 109.46980 * 240.00084 * 3 2 1
7 7 C 1.37880 * 119.99850 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99329 * 186.64465 * 7 2 1
9 9 C 1.50698 * 120.00162 * 6.63874 * 7 2 1
10 10 H 1.09003 * 109.46901 * 32.89021 * 9 7 2
11 11 C 1.50697 * 109.47040 * 152.89070 * 9 7 2
12 12 O 1.20757 * 120.00075 * 93.53873 * 11 9 7
13 13 C 1.50706 * 119.99556 * 273.53947 * 11 9 7
14 14 C 1.53000 * 117.49781 * 223.14788 * 13 11 9
15 15 C 1.53001 * 117.49384 * 154.52610 * 13 11 9
16 16 C 1.50701 * 109.46989 * 272.89003 * 9 7 2
17 17 C 1.38235 * 120.00094 * 299.72684 * 16 9 7
18 18 C 1.38239 * 119.99898 * 179.81391 * 17 16 9
19 19 C 1.38231 * 119.99807 * 0.39800 * 18 17 16
20 20 C 1.38232 * 120.00134 * 359.84980 * 19 18 17
21 21 C 1.38231 * 120.00163 * 359.96396 * 20 19 18
22 22 H 0.96993 * 119.99862 * 174.82701 * 1 2 3
23 23 H 1.09003 * 115.55284 * 8.86072 * 13 11 9
24 24 H 1.08999 * 117.49456 * 0.02562 * 14 13 11
25 25 H 1.08992 * 117.50077 * 145.02662 * 14 13 11
26 26 H 1.08999 * 117.49935 * 214.97815 * 15 13 11
27 27 H 1.09004 * 117.50160 * 0.02562 * 15 13 11
28 28 H 1.08000 * 119.99456 * 359.97438 * 17 16 9
29 29 H 1.07997 * 119.99350 * 180.22590 * 18 17 16
30 30 H 1.08002 * 119.99651 * 179.84137 * 19 18 17
31 31 H 1.08001 * 119.99771 * 179.97438 * 20 19 18
32 32 H 1.08002 * 119.99870 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 1.2841 2.7465 0.0006
5 1 3.1030 1.6963 1.2125
6 1 3.1029 1.6964 -1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0791 -1.1972 0.1077
9 6 1.2587 -2.4947 -0.1520
10 1 0.3899 -2.3428 -0.7925
11 6 2.1665 -3.5251 -0.7727
12 8 2.8001 -4.2741 -0.0687
13 6 2.2835 -3.6205 -2.2722
14 6 2.2816 -5.0188 -2.8933
15 6 3.5766 -4.2053 -2.8440
16 6 0.8061 -2.9750 1.2029
17 6 1.7381 -3.2427 2.1881
18 6 1.3227 -3.6795 3.4321
19 6 -0.0241 -3.8565 3.6882
20 6 -0.9557 -3.5937 2.7014
21 6 -0.5406 -3.1532 1.4587
22 1 -0.4849 -0.8366 -0.0757
23 1 1.8022 -2.8195 -2.8333
24 1 2.1953 -5.8695 -2.2174
25 1 1.7989 -5.1380 -3.8632
26 1 3.9457 -3.7894 -3.7814
27 1 4.3424 -4.5214 -2.1356
28 1 2.7906 -3.1080 1.9866
29 1 2.0507 -3.8851 4.2029
30 1 -0.3484 -4.2002 4.6594
31 1 -2.0079 -3.7324 2.9015
32 1 -1.2685 -2.9483 0.6875
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000055026390.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:26:12
Heat of formation + Delta-G solvation = 0.124128 kcal
Electronic energy + Delta-G solvation = -15655.279955 eV
Core-core repulsion = 13160.161815 eV
Total energy + Delta-G solvation = -2495.118140 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.105 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.45739 -37.96807 -35.54743 -33.96103 -30.89114 -30.03964 -27.75596 -24.46250
-23.00042 -22.16652 -21.67340 -20.43513 -18.67909 -17.11886 -16.06464 -15.82794
-14.86135 -14.37395 -14.08764 -13.83758 -13.57665 -13.26586 -12.52718 -12.39763
-12.24348 -11.93198 -11.64989 -11.30989 -10.91894 -10.83514 -10.37723 -10.32018
-10.20357 -10.07957 -10.05559 -9.02041 -8.75631 -8.48467 -8.04396 -7.65748
-6.56531 -4.30224 2.24956 2.30052 2.72519 3.36669 3.38344 3.56525
4.25104 4.41642 4.56340 4.83512 5.15145 5.18796 5.29186 5.58194
5.63535 5.70095 5.78649 5.83649 5.97184 6.10472 6.26402 6.33397
6.40127 6.45275 6.51786 6.63648 6.89235 6.96901 7.26884 7.33962
7.61547 7.81006 7.94841 8.19823 8.45999 8.64292 9.40147 10.82696
Molecular weight = 230.10amu
Principal moments of inertia in cm(-1)
A = 0.014260 B = 0.013976 C = 0.008266
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1963.125022 B = 2002.963131 C = 3386.661792
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.031 3.969
3 Si 1.070 2.930
4 H -0.280 1.280
5 H -0.286 1.286
6 H -0.284 1.284
7 C -0.584 4.584
8 H 0.057 0.943
9 C 0.023 3.977
10 H 0.064 0.936
11 C 0.404 3.596
12 O -0.481 6.481
13 C -0.204 4.204
14 C -0.160 4.160
15 C -0.157 4.157
16 C -0.036 4.036
17 C -0.080 4.080
18 C -0.135 4.135
19 C -0.146 4.146
20 C -0.130 4.130
21 C -0.126 4.126
22 H 0.273 0.727
23 H 0.123 0.877
24 H 0.095 0.905
25 H 0.097 0.903
26 H 0.097 0.903
27 H 0.099 0.901
28 H 0.117 0.883
29 H 0.108 0.892
30 H 0.107 0.893
31 H 0.108 0.892
32 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.339 -6.019 -1.848 6.437
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.527 5.527
2 C -0.176 4.176
3 Si 0.897 3.103
4 H -0.205 1.205
5 H -0.212 1.212
6 H -0.211 1.211
7 C -0.622 4.622
8 H 0.075 0.925
9 C 0.004 3.996
10 H 0.082 0.918
11 C 0.283 3.717
12 O -0.357 6.357
13 C -0.223 4.223
14 C -0.197 4.197
15 C -0.194 4.194
16 C -0.037 4.037
17 C -0.098 4.098
18 C -0.153 4.153
19 C -0.165 4.165
20 C -0.149 4.149
21 C -0.144 4.144
22 H 0.085 0.915
23 H 0.141 0.859
24 H 0.114 0.886
25 H 0.116 0.884
26 H 0.115 0.885
27 H 0.117 0.883
28 H 0.135 0.865
29 H 0.126 0.874
30 H 0.125 0.875
31 H 0.126 0.874
32 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 1.454 -4.764 -1.414 5.178
hybrid contribution 0.065 -1.442 -0.065 1.445
sum 1.519 -6.207 -1.479 6.559
Atomic orbital electron populations
1.70792 1.06791 1.31495 1.43643 1.25901 0.96389 1.02552 0.92769
0.83524 0.74989 0.74963 0.76860 1.20540 1.21210 1.21072 1.21454
0.94785 0.89104 1.56815 0.92505 1.18491 0.96428 0.94268 0.90413
0.91850 1.24104 0.79240 0.80153 0.88239 1.90246 1.40988 1.39853
1.64605 1.22915 1.04037 0.98431 0.96918 1.22866 1.01490 0.93441
1.01901 1.22845 0.91050 1.03062 1.02400 1.20355 0.92484 0.93048
0.97774 1.20926 0.99823 0.97023 0.92061 1.21023 0.95469 1.01771
0.97054 1.20839 0.93505 1.03542 0.98571 1.20901 0.98458 1.01479
0.94017 1.20991 0.95669 1.00795 0.96951 0.91489 0.85900 0.88627
0.88424 0.88473 0.88299 0.86483 0.87383 0.87509 0.87361 0.87139
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.20 13.63 55.43 0.76 -24.44 16
2 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16
3 Si 1.07 24.04 29.91 -169.99 -5.08 18.96 16
4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16
6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
7 C -0.58 -15.46 7.92 -34.44 -0.27 -15.73 16
8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16
9 C 0.02 0.56 1.88 -94.08 -0.18 0.39 16
10 H 0.06 1.55 6.60 -51.93 -0.34 1.21 16
11 C 0.40 8.92 5.98 -29.03 -0.17 8.74 16
12 O -0.48 -11.26 14.61 6.00 0.09 -11.17 16
13 C -0.20 -3.69 6.12 -91.77 -0.56 -4.26 16
14 C -0.16 -2.37 10.14 -26.73 -0.27 -2.64 16
15 C -0.16 -2.41 10.05 -26.73 -0.27 -2.67 16
16 C -0.04 -0.85 4.57 -104.62 -0.48 -1.33 16
17 C -0.08 -1.85 8.02 -39.58 -0.32 -2.16 16
18 C -0.14 -2.71 10.05 -39.58 -0.40 -3.11 16
19 C -0.15 -2.74 10.05 -39.59 -0.40 -3.14 16
20 C -0.13 -2.53 10.05 -39.59 -0.40 -2.93 16
21 C -0.13 -2.74 9.19 -39.59 -0.36 -3.11 16
22 H 0.27 7.56 6.13 -40.82 -0.25 7.31 16
23 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16
24 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16
25 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16
26 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16
27 H 0.10 1.60 7.90 -51.93 -0.41 1.19 16
28 H 0.12 2.79 7.31 -52.49 -0.38 2.41 16
29 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16
30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16
31 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16
32 H 0.11 2.29 7.88 -52.49 -0.41 1.87 16
LS Contribution 279.30 15.07 4.21 4.21
Total: -1.00 -29.44 279.30 -8.17 -37.61
By element:
Atomic # 1 Polarization: 10.02 SS G_CDS: -3.97 Total: 6.05 kcal
Atomic # 6 Polarization: -27.04 SS G_CDS: -4.17 Total: -31.21 kcal
Atomic # 7 Polarization: -25.20 SS G_CDS: 0.76 Total: -24.44 kcal
Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal
Atomic # 14 Polarization: 24.04 SS G_CDS: -5.08 Total: 18.96 kcal
Total LS contribution 4.21 Total: 4.21 kcal
Total: -29.44 -8.17 -37.61 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000055026390.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.732 kcal
(2) G-P(sol) polarization free energy of solvation -29.436 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.296 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.124 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds