Wall clock time and date at job start Mon Mar 30 2020 03:26:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86805 * 119.99917 * 2 1
4 4 H 1.48503 * 109.46855 * 0.02562 * 3 2 1
5 5 H 1.48500 * 109.46683 * 120.00175 * 3 2 1
6 6 H 1.48494 * 109.46980 * 240.00084 * 3 2 1
7 7 C 1.37880 * 119.99850 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99329 * 186.64465 * 7 2 1
9 9 C 1.50698 * 120.00162 * 6.63874 * 7 2 1
10 10 H 1.09003 * 109.46901 * 32.89021 * 9 7 2
11 11 C 1.50697 * 109.47040 * 152.89070 * 9 7 2
12 12 O 1.20757 * 120.00075 * 93.53873 * 11 9 7
13 13 C 1.50706 * 119.99556 * 273.53947 * 11 9 7
14 14 C 1.53000 * 117.49781 * 223.14788 * 13 11 9
15 15 C 1.53001 * 117.49384 * 154.52610 * 13 11 9
16 16 C 1.50701 * 109.46989 * 272.89003 * 9 7 2
17 17 C 1.38235 * 120.00094 * 299.72684 * 16 9 7
18 18 C 1.38239 * 119.99898 * 179.81391 * 17 16 9
19 19 C 1.38231 * 119.99807 * 0.39800 * 18 17 16
20 20 C 1.38232 * 120.00134 * 359.84980 * 19 18 17
21 21 C 1.38231 * 120.00163 * 359.96396 * 20 19 18
22 22 H 0.96993 * 119.99862 * 174.82701 * 1 2 3
23 23 H 1.09003 * 115.55284 * 8.86072 * 13 11 9
24 24 H 1.08999 * 117.49456 * 0.02562 * 14 13 11
25 25 H 1.08992 * 117.50077 * 145.02662 * 14 13 11
26 26 H 1.08999 * 117.49935 * 214.97815 * 15 13 11
27 27 H 1.09004 * 117.50160 * 0.02562 * 15 13 11
28 28 H 1.08000 * 119.99456 * 359.97438 * 17 16 9
29 29 H 1.07997 * 119.99350 * 180.22590 * 18 17 16
30 30 H 1.08002 * 119.99651 * 179.84137 * 19 18 17
31 31 H 1.08001 * 119.99771 * 179.97438 * 20 19 18
32 32 H 1.08002 * 119.99870 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 1.2841 2.7465 0.0006
5 1 3.1030 1.6963 1.2125
6 1 3.1029 1.6964 -1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0791 -1.1972 0.1077
9 6 1.2587 -2.4947 -0.1520
10 1 0.3899 -2.3428 -0.7925
11 6 2.1665 -3.5251 -0.7727
12 8 2.8001 -4.2741 -0.0687
13 6 2.2835 -3.6205 -2.2722
14 6 2.2816 -5.0188 -2.8933
15 6 3.5766 -4.2053 -2.8440
16 6 0.8061 -2.9750 1.2029
17 6 1.7381 -3.2427 2.1881
18 6 1.3227 -3.6795 3.4321
19 6 -0.0241 -3.8565 3.6882
20 6 -0.9557 -3.5937 2.7014
21 6 -0.5406 -3.1532 1.4587
22 1 -0.4849 -0.8366 -0.0757
23 1 1.8022 -2.8195 -2.8333
24 1 2.1953 -5.8695 -2.2174
25 1 1.7989 -5.1380 -3.8632
26 1 3.9457 -3.7894 -3.7814
27 1 4.3424 -4.5214 -2.1356
28 1 2.7906 -3.1080 1.9866
29 1 2.0507 -3.8851 4.2029
30 1 -0.3484 -4.2002 4.6594
31 1 -2.0079 -3.7324 2.9015
32 1 -1.2685 -2.9483 0.6875
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000055026390.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:26:12
Heat of formation + Delta-G solvation = -14.662923 kcal
Electronic energy + Delta-G solvation = -15655.921169 eV
Core-core repulsion = 13160.161815 eV
Total energy + Delta-G solvation = -2495.759354 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.105 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.13758 -39.56484 -36.98163 -35.88619 -32.72543 -31.66658 -29.49758 -26.32896
-24.68041 -23.37371 -23.31628 -22.07324 -20.36338 -19.01895 -17.60411 -17.49088
-16.41852 -16.05054 -15.68104 -15.53382 -15.34440 -14.95889 -14.16833 -14.10466
-13.92545 -13.54735 -13.30713 -12.78480 -12.60245 -12.47916 -12.03269 -11.94721
-11.81374 -11.56358 -11.41401 -10.97558 -10.65640 -10.30778 -9.68614 -9.36756
-8.67727 -6.42151 0.60772 0.66614 1.05602 1.53626 1.59600 1.79297
2.52844 2.93254 2.96206 3.14159 3.28826 3.80341 4.03453 4.09428
4.18372 4.20989 4.33776 4.39710 4.58298 4.63370 4.64344 4.81578
4.86710 4.91802 5.05332 5.15544 5.25308 5.29964 5.65748 5.69472
5.73380 6.00738 6.09788 6.27329 6.51906 6.75212 7.34611 8.71790
Molecular weight = 230.10amu
Principal moments of inertia in cm(-1)
A = 0.014260 B = 0.013976 C = 0.008266
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1963.125022 B = 2002.963131 C = 3386.661792
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C -0.011 4.011
3 Si 1.109 2.891
4 H -0.280 1.280
5 H -0.280 1.280
6 H -0.264 1.264
7 C -0.590 4.590
8 H 0.041 0.959
9 C 0.018 3.982
10 H 0.049 0.951
11 C 0.400 3.600
12 O -0.502 6.502
13 C -0.235 4.235
14 C -0.135 4.135
15 C -0.144 4.144
16 C -0.063 4.063
17 C -0.108 4.108
18 C -0.136 4.136
19 C -0.139 4.139
20 C -0.128 4.128
21 C -0.146 4.146
22 H 0.266 0.734
23 H 0.123 0.877
24 H 0.089 0.911
25 H 0.133 0.867
26 H 0.129 0.871
27 H 0.086 0.914
28 H 0.094 0.906
29 H 0.137 0.863
30 H 0.151 0.849
31 H 0.144 0.856
32 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.243 -6.701 -1.685 7.020
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.212 4.212
3 Si 0.931 3.069
4 H -0.206 1.206
5 H -0.205 1.205
6 H -0.189 1.189
7 C -0.627 4.627
8 H 0.059 0.941
9 C -0.002 4.002
10 H 0.067 0.933
11 C 0.280 3.720
12 O -0.380 6.380
13 C -0.254 4.254
14 C -0.172 4.172
15 C -0.181 4.181
16 C -0.064 4.064
17 C -0.126 4.126
18 C -0.154 4.154
19 C -0.156 4.156
20 C -0.145 4.145
21 C -0.164 4.164
22 H 0.077 0.923
23 H 0.141 0.859
24 H 0.107 0.893
25 H 0.151 0.849
26 H 0.147 0.853
27 H 0.105 0.895
28 H 0.113 0.887
29 H 0.155 0.845
30 H 0.169 0.831
31 H 0.162 0.838
32 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 1.361 -5.466 -1.263 5.772
hybrid contribution 0.074 -1.329 -0.057 1.333
sum 1.436 -6.795 -1.320 7.069
Atomic orbital electron populations
1.70876 1.07504 1.31136 1.45809 1.27119 0.96510 1.05577 0.92042
0.83026 0.74316 0.71650 0.77898 1.20556 1.20535 1.18913 1.21581
0.94115 0.90604 1.56442 0.94082 1.18472 0.96153 0.94377 0.91160
0.93309 1.24255 0.78147 0.79227 0.90334 1.90218 1.41620 1.40513
1.65674 1.22787 1.07436 1.01072 0.94079 1.23027 1.00633 0.90821
1.02679 1.22991 0.90135 1.02027 1.02910 1.20388 0.93655 0.94817
0.97544 1.20904 0.98688 0.99303 0.93748 1.21387 0.97190 1.00488
0.96343 1.21331 0.92524 1.01678 1.00116 1.21342 1.00622 0.99701
0.92865 1.21163 0.94940 1.01830 0.98502 0.92308 0.85858 0.89290
0.84859 0.85312 0.89510 0.88739 0.84518 0.83125 0.83825 0.87238
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.09 13.63 21.45 0.29 -52.80 16
2 C -0.01 -0.61 5.45 84.65 0.46 -0.15 16
3 Si 1.11 48.82 29.91 68.60 2.05 50.88 16
4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16
5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16
6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16
7 C -0.59 -32.41 7.92 25.60 0.20 -32.20 16
8 H 0.04 2.32 7.82 -2.91 -0.02 2.29 16
9 C 0.02 0.89 1.88 -13.03 -0.02 0.87 16
10 H 0.05 2.54 6.60 -2.39 -0.02 2.52 16
11 C 0.40 18.28 5.98 29.10 0.17 18.45 16
12 O -0.50 -24.39 14.61 -1.44 -0.02 -24.41 16
13 C -0.23 -8.48 6.12 -11.54 -0.07 -8.55 16
14 C -0.13 -3.73 10.14 30.60 0.31 -3.42 16
15 C -0.14 -4.18 10.05 30.60 0.31 -3.88 16
16 C -0.06 -3.10 4.57 -19.87 -0.09 -3.19 16
17 C -0.11 -5.10 8.02 22.27 0.18 -4.92 16
18 C -0.14 -5.28 10.05 22.27 0.22 -5.06 16
19 C -0.14 -4.78 10.05 22.27 0.22 -4.55 16
20 C -0.13 -4.68 10.05 22.27 0.22 -4.45 16
21 C -0.15 -6.44 9.19 22.27 0.20 -6.23 16
22 H 0.27 15.29 6.13 -92.71 -0.57 14.73 16
23 H 0.12 4.39 8.14 -2.39 -0.02 4.37 16
24 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16
25 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16
26 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16
27 H 0.09 2.75 7.90 -2.39 -0.02 2.73 16
28 H 0.09 4.75 7.31 -2.91 -0.02 4.73 16
29 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16
30 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16
31 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16
32 H 0.11 4.68 7.88 -2.91 -0.02 4.66 16
Total: -1.00 -65.64 279.30 5.95 -59.69
By element:
Atomic # 1 Polarization: 22.63 SS G_CDS: 1.30 Total: 23.93 kcal
Atomic # 6 Polarization: -59.62 SS G_CDS: 2.32 Total: -57.29 kcal
Atomic # 7 Polarization: -53.09 SS G_CDS: 0.29 Total: -52.80 kcal
Atomic # 8 Polarization: -24.39 SS G_CDS: -0.02 Total: -24.41 kcal
Atomic # 14 Polarization: 48.82 SS G_CDS: 2.05 Total: 50.88 kcal
Total: -65.64 5.95 -59.69 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000055026390.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.030 kcal
(2) G-P(sol) polarization free energy of solvation -65.643 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.613 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.693 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.663 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds