Wall clock time and date at job start Mon Mar 30 2020 03:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 119.99917 * 2 1 4 4 H 1.48503 * 109.46855 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46683 * 120.00175 * 3 2 1 6 6 H 1.48494 * 109.46980 * 240.00084 * 3 2 1 7 7 C 1.37880 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99329 * 186.64465 * 7 2 1 9 9 C 1.50698 * 120.00162 * 6.63874 * 7 2 1 10 10 H 1.09003 * 109.46901 * 32.89021 * 9 7 2 11 11 C 1.50697 * 109.47040 * 152.89070 * 9 7 2 12 12 O 1.20757 * 120.00075 * 93.53873 * 11 9 7 13 13 C 1.50706 * 119.99556 * 273.53947 * 11 9 7 14 14 C 1.53000 * 117.49781 * 223.14788 * 13 11 9 15 15 C 1.53001 * 117.49384 * 154.52610 * 13 11 9 16 16 C 1.50701 * 109.46989 * 272.89003 * 9 7 2 17 17 C 1.38235 * 120.00094 * 299.72684 * 16 9 7 18 18 C 1.38239 * 119.99898 * 179.81391 * 17 16 9 19 19 C 1.38231 * 119.99807 * 0.39800 * 18 17 16 20 20 C 1.38232 * 120.00134 * 359.84980 * 19 18 17 21 21 C 1.38231 * 120.00163 * 359.96396 * 20 19 18 22 22 H 0.96993 * 119.99862 * 174.82701 * 1 2 3 23 23 H 1.09003 * 115.55284 * 8.86072 * 13 11 9 24 24 H 1.08999 * 117.49456 * 0.02562 * 14 13 11 25 25 H 1.08992 * 117.50077 * 145.02662 * 14 13 11 26 26 H 1.08999 * 117.49935 * 214.97815 * 15 13 11 27 27 H 1.09004 * 117.50160 * 0.02562 * 15 13 11 28 28 H 1.08000 * 119.99456 * 359.97438 * 17 16 9 29 29 H 1.07997 * 119.99350 * 180.22590 * 18 17 16 30 30 H 1.08002 * 119.99651 * 179.84137 * 19 18 17 31 31 H 1.08001 * 119.99771 * 179.97438 * 20 19 18 32 32 H 1.08002 * 119.99870 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0791 -1.1972 0.1077 9 6 1.2587 -2.4947 -0.1520 10 1 0.3899 -2.3428 -0.7925 11 6 2.1665 -3.5251 -0.7727 12 8 2.8001 -4.2741 -0.0687 13 6 2.2835 -3.6205 -2.2722 14 6 2.2816 -5.0188 -2.8933 15 6 3.5766 -4.2053 -2.8440 16 6 0.8061 -2.9750 1.2029 17 6 1.7381 -3.2427 2.1881 18 6 1.3227 -3.6795 3.4321 19 6 -0.0241 -3.8565 3.6882 20 6 -0.9557 -3.5937 2.7014 21 6 -0.5406 -3.1532 1.4587 22 1 -0.4849 -0.8366 -0.0757 23 1 1.8022 -2.8195 -2.8333 24 1 2.1953 -5.8695 -2.2174 25 1 1.7989 -5.1380 -3.8632 26 1 3.9457 -3.7894 -3.7814 27 1 4.3424 -4.5214 -2.1356 28 1 2.7906 -3.1080 1.9866 29 1 2.0507 -3.8851 4.2029 30 1 -0.3484 -4.2002 4.6594 31 1 -2.0079 -3.7324 2.9015 32 1 -1.2685 -2.9483 0.6875 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055026390.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:12 Heat of formation + Delta-G solvation = -14.662923 kcal Electronic energy + Delta-G solvation = -15655.921169 eV Core-core repulsion = 13160.161815 eV Total energy + Delta-G solvation = -2495.759354 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13758 -39.56484 -36.98163 -35.88619 -32.72543 -31.66658 -29.49758 -26.32896 -24.68041 -23.37371 -23.31628 -22.07324 -20.36338 -19.01895 -17.60411 -17.49088 -16.41852 -16.05054 -15.68104 -15.53382 -15.34440 -14.95889 -14.16833 -14.10466 -13.92545 -13.54735 -13.30713 -12.78480 -12.60245 -12.47916 -12.03269 -11.94721 -11.81374 -11.56358 -11.41401 -10.97558 -10.65640 -10.30778 -9.68614 -9.36756 -8.67727 -6.42151 0.60772 0.66614 1.05602 1.53626 1.59600 1.79297 2.52844 2.93254 2.96206 3.14159 3.28826 3.80341 4.03453 4.09428 4.18372 4.20989 4.33776 4.39710 4.58298 4.63370 4.64344 4.81578 4.86710 4.91802 5.05332 5.15544 5.25308 5.29964 5.65748 5.69472 5.73380 6.00738 6.09788 6.27329 6.51906 6.75212 7.34611 8.71790 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.013976 C = 0.008266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.125022 B = 2002.963131 C = 3386.661792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 1.109 2.891 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.590 4.590 8 H 0.041 0.959 9 C 0.018 3.982 10 H 0.049 0.951 11 C 0.400 3.600 12 O -0.502 6.502 13 C -0.235 4.235 14 C -0.135 4.135 15 C -0.144 4.144 16 C -0.063 4.063 17 C -0.108 4.108 18 C -0.136 4.136 19 C -0.139 4.139 20 C -0.128 4.128 21 C -0.146 4.146 22 H 0.266 0.734 23 H 0.123 0.877 24 H 0.089 0.911 25 H 0.133 0.867 26 H 0.129 0.871 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 -6.701 -1.685 7.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.212 4.212 3 Si 0.931 3.069 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.627 4.627 8 H 0.059 0.941 9 C -0.002 4.002 10 H 0.067 0.933 11 C 0.280 3.720 12 O -0.380 6.380 13 C -0.254 4.254 14 C -0.172 4.172 15 C -0.181 4.181 16 C -0.064 4.064 17 C -0.126 4.126 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.145 4.145 21 C -0.164 4.164 22 H 0.077 0.923 23 H 0.141 0.859 24 H 0.107 0.893 25 H 0.151 0.849 26 H 0.147 0.853 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.155 0.845 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.361 -5.466 -1.263 5.772 hybrid contribution 0.074 -1.329 -0.057 1.333 sum 1.436 -6.795 -1.320 7.069 Atomic orbital electron populations 1.70876 1.07504 1.31136 1.45809 1.27119 0.96510 1.05577 0.92042 0.83026 0.74316 0.71650 0.77898 1.20556 1.20535 1.18913 1.21581 0.94115 0.90604 1.56442 0.94082 1.18472 0.96153 0.94377 0.91160 0.93309 1.24255 0.78147 0.79227 0.90334 1.90218 1.41620 1.40513 1.65674 1.22787 1.07436 1.01072 0.94079 1.23027 1.00633 0.90821 1.02679 1.22991 0.90135 1.02027 1.02910 1.20388 0.93655 0.94817 0.97544 1.20904 0.98688 0.99303 0.93748 1.21387 0.97190 1.00488 0.96343 1.21331 0.92524 1.01678 1.00116 1.21342 1.00622 0.99701 0.92865 1.21163 0.94940 1.01830 0.98502 0.92308 0.85858 0.89290 0.84859 0.85312 0.89510 0.88739 0.84518 0.83125 0.83825 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.09 13.63 21.45 0.29 -52.80 16 2 C -0.01 -0.61 5.45 84.65 0.46 -0.15 16 3 Si 1.11 48.82 29.91 68.60 2.05 50.88 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.59 -32.41 7.92 25.60 0.20 -32.20 16 8 H 0.04 2.32 7.82 -2.91 -0.02 2.29 16 9 C 0.02 0.89 1.88 -13.03 -0.02 0.87 16 10 H 0.05 2.54 6.60 -2.39 -0.02 2.52 16 11 C 0.40 18.28 5.98 29.10 0.17 18.45 16 12 O -0.50 -24.39 14.61 -1.44 -0.02 -24.41 16 13 C -0.23 -8.48 6.12 -11.54 -0.07 -8.55 16 14 C -0.13 -3.73 10.14 30.60 0.31 -3.42 16 15 C -0.14 -4.18 10.05 30.60 0.31 -3.88 16 16 C -0.06 -3.10 4.57 -19.87 -0.09 -3.19 16 17 C -0.11 -5.10 8.02 22.27 0.18 -4.92 16 18 C -0.14 -5.28 10.05 22.27 0.22 -5.06 16 19 C -0.14 -4.78 10.05 22.27 0.22 -4.55 16 20 C -0.13 -4.68 10.05 22.27 0.22 -4.45 16 21 C -0.15 -6.44 9.19 22.27 0.20 -6.23 16 22 H 0.27 15.29 6.13 -92.71 -0.57 14.73 16 23 H 0.12 4.39 8.14 -2.39 -0.02 4.37 16 24 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.09 2.75 7.90 -2.39 -0.02 2.73 16 28 H 0.09 4.75 7.31 -2.91 -0.02 4.73 16 29 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 31 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.11 4.68 7.88 -2.91 -0.02 4.66 16 Total: -1.00 -65.64 279.30 5.95 -59.69 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 1.30 Total: 23.93 kcal Atomic # 6 Polarization: -59.62 SS G_CDS: 2.32 Total: -57.29 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.29 Total: -52.80 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.02 Total: -24.41 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.05 Total: 50.88 kcal Total: -65.64 5.95 -59.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055026390.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.030 kcal (2) G-P(sol) polarization free energy of solvation -65.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds