Wall clock time and date at job start Mon Mar 30 2020 03:04:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31240 * 1
3 3 Si 1.86800 * 120.00182 * 2 1
4 4 H 1.48496 * 109.47185 * 239.72843 * 3 2 1
5 5 H 1.48502 * 109.46920 * 359.72950 * 3 2 1
6 6 H 1.48503 * 109.46963 * 119.72855 * 3 2 1
7 7 C 1.39052 * 120.00213 * 179.72712 * 2 1 3
8 8 H 1.08000 * 120.00442 * 179.97438 * 7 2 1
9 9 N 1.37316 * 119.99796 * 0.02562 * 7 2 1
10 10 N 1.40314 * 126.94434 * 342.18570 * 9 7 2
11 11 N 1.28676 * 108.35663 * 179.82263 * 10 9 7
12 12 C 1.33063 * 110.34798 * 0.45320 * 11 10 9
13 13 C 1.36445 * 108.85545 * 359.71340 * 12 11 10
14 14 C 1.47766 * 126.83232 * 179.97438 * 13 12 11
15 15 C 1.39675 * 120.07097 * 157.29806 * 14 13 12
16 16 C 1.37761 * 119.93027 * 179.79194 * 15 14 13
17 17 C 1.39085 * 120.07091 * 0.48376 * 16 15 14
18 18 N 1.39508 * 119.93144 * 179.76691 * 17 16 15
19 19 C 1.39089 * 120.14216 * 359.74660 * 17 16 15
20 20 C 1.37769 * 120.06390 * 0.02562 * 19 17 16
21 21 H 0.97003 * 119.99729 * 0.26889 * 1 2 3
22 22 H 1.08004 * 125.56985 * 179.68691 * 12 11 10
23 23 H 1.08008 * 120.03094 * 0.02562 * 15 14 13
24 24 H 1.08010 * 119.96348 * 180.23138 * 16 15 14
25 25 H 0.96995 * 119.99820 * 179.97438 * 18 17 16
26 26 H 0.96998 * 119.99797 * 359.97438 * 18 17 16
27 27 H 1.08000 * 119.96511 * 179.97438 * 19 17 16
28 28 H 1.08001 * 120.03126 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3124 0.0000 0.0000
3 14 2.2465 1.6177 0.0000
4 1 3.1052 1.6935 -1.2091
5 1 1.2815 2.7464 -0.0066
6 1 3.0952 1.6992 1.2158
7 6 2.0077 -1.2042 0.0057
8 1 3.0877 -1.2042 0.0053
9 7 1.3211 -2.3934 0.0109
10 7 -0.0253 -2.5883 0.3543
11 7 -0.2979 -3.8398 0.2308
12 6 0.7803 -4.5113 -0.1657
13 6 1.8157 -3.6351 -0.3137
14 6 3.1943 -3.9563 -0.7379
15 6 4.0041 -2.9643 -1.2956
16 6 5.2903 -3.2660 -1.6861
17 6 5.7793 -4.5592 -1.5348
18 7 7.0806 -4.8626 -1.9358
19 6 4.9739 -5.5505 -0.9843
20 6 3.6883 -5.2540 -0.5875
21 1 -0.4850 0.8401 -0.0039
22 1 0.8282 -5.5759 -0.3411
23 1 3.6235 -1.9608 -1.4170
24 1 5.9182 -2.4983 -2.1139
25 1 7.4228 -5.7641 -1.8304
26 1 7.6432 -4.1721 -2.3199
27 1 5.3564 -6.5539 -0.8685
28 1 3.0635 -6.0241 -0.1597
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000062296116.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:01
Heat of formation + Delta-G solvation = 112.012178 kcal
Electronic energy + Delta-G solvation = -15127.695979 eV
Core-core repulsion = 12566.182077 eV
Total energy + Delta-G solvation = -2561.513902 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.086 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.11273 -38.56992 -34.47295 -34.04955 -31.44594 -30.45881 -29.62101 -26.77475
-25.73693 -22.46813 -22.09844 -20.68393 -19.54448 -17.94753 -16.59918 -16.41318
-15.88592 -14.85478 -14.42262 -13.92509 -13.61447 -13.23480 -12.94184 -12.83426
-12.75153 -11.89269 -11.73449 -11.41797 -11.13580 -10.70139 -10.42671 -10.36883
-9.96019 -9.57013 -9.19197 -8.69349 -8.46729 -7.84643 -6.88574 -6.62550
-4.62894 1.83926 1.93944 2.86914 2.93971 2.98727 3.37145 3.66927
4.08926 4.16156 4.48037 4.60670 4.83942 5.36121 5.40187 5.74774
5.96214 5.99721 6.22322 6.29165 6.54132 6.65495 6.78544 6.80821
6.92738 6.98084 7.30347 7.45672 7.75812 7.84478 7.90283 7.93621
8.46849 9.12080 10.10795 10.22201
Molecular weight = 230.09amu
Principal moments of inertia in cm(-1)
A = 0.024379 B = 0.009495 C = 0.006919
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1148.272802 B = 2948.267743 C = 4046.015836
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.758 5.758
2 C 0.049 3.951
3 Si 0.939 3.061
4 H -0.262 1.262
5 H -0.273 1.273
6 H -0.262 1.262
7 C -0.310 4.310
8 H 0.127 0.873
9 N -0.138 5.138
10 N -0.102 5.102
11 N -0.329 5.329
12 C -0.086 4.086
13 C -0.051 4.051
14 C -0.024 4.024
15 C -0.080 4.080
16 C -0.192 4.192
17 C 0.191 3.809
18 N -0.886 5.886
19 C -0.194 4.194
20 C -0.069 4.069
21 H 0.285 0.715
22 H 0.151 0.849
23 H 0.139 0.861
24 H 0.114 0.886
25 H 0.392 0.608
26 H 0.393 0.607
27 H 0.114 0.886
28 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.807 -3.570 -3.498 13.748
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.384 5.384
2 C -0.171 4.171
3 Si 0.761 3.239
4 H -0.186 1.186
5 H -0.197 1.197
6 H -0.186 1.186
7 C -0.447 4.447
8 H 0.144 0.856
9 N 0.090 4.910
10 N -0.078 5.078
11 N -0.186 5.186
12 C -0.255 4.255
13 C -0.184 4.184
14 C -0.029 4.029
15 C -0.100 4.100
16 C -0.215 4.215
17 C 0.088 3.912
18 N -0.426 5.426
19 C -0.217 4.217
20 C -0.089 4.089
21 H 0.095 0.905
22 H 0.168 0.832
23 H 0.157 0.843
24 H 0.132 0.868
25 H 0.220 0.780
26 H 0.220 0.780
27 H 0.132 0.868
28 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 11.034 -2.751 -2.963 11.751
hybrid contribution 1.762 0.230 -0.476 1.840
sum 12.796 -2.521 -3.439 13.488
Atomic orbital electron populations
1.70087 1.06552 1.29454 1.32323 1.25836 0.95781 1.00862 0.94665
0.85809 0.79326 0.78735 0.80033 1.18598 1.19713 1.18602 1.20250
0.92511 0.80594 1.51305 0.85604 1.46745 1.08900 1.04663 1.30664
1.82414 0.91558 1.07345 1.26508 1.73816 1.25869 1.01478 1.17390
1.22284 0.89638 0.99184 1.14347 1.19721 0.94901 0.87206 1.16525
1.17708 0.90851 0.93401 1.00895 1.21483 0.92626 1.00396 0.95457
1.20444 0.97209 0.94763 1.09035 1.17775 0.85174 0.93544 0.94680
1.42324 1.12930 1.13987 1.73324 1.20346 0.95144 0.98101 1.08114
1.20837 0.94351 0.95664 0.98066 0.90451 0.83195 0.84295 0.86780
0.78037 0.77974 0.86788 0.86057
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -20.46 12.07 55.50 0.67 -19.79 15
2 C 0.05 1.21 5.49 -17.50 -0.10 1.12 15
3 Si 0.94 17.96 29.55 -169.99 -5.02 12.94 15
4 H -0.26 -4.78 7.11 56.52 0.40 -4.37 15
5 H -0.27 -5.14 7.11 56.52 0.40 -4.73 15
6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15
7 C -0.31 -7.96 8.80 -14.79 -0.13 -8.09 15
8 H 0.13 2.91 5.59 -52.49 -0.29 2.62 15
9 N -0.14 -3.83 3.76 -8.17 -0.03 -3.86 15
10 N -0.10 -3.08 11.91 60.35 0.72 -2.36 15
11 N -0.33 -9.30 12.28 30.32 0.37 -8.92 15
12 C -0.09 -2.12 11.30 -17.67 -0.20 -2.32 15
13 C -0.05 -1.26 6.75 -82.05 -0.55 -1.82 15
14 C -0.02 -0.50 5.85 -104.93 -0.61 -1.12 15
15 C -0.08 -1.54 8.72 -39.22 -0.34 -1.88 15
16 C -0.19 -3.05 9.87 -39.44 -0.39 -3.44 15
17 C 0.19 2.75 6.76 -83.74 -0.57 2.19 15
18 N -0.89 -9.10 9.08 32.45 0.29 -8.80 15
19 C -0.19 -2.89 9.87 -39.44 -0.39 -3.28 15
20 C -0.07 -1.20 9.57 -39.22 -0.38 -1.57 15
21 H 0.28 6.94 8.31 -40.82 -0.34 6.60 15
22 H 0.15 3.09 7.75 -52.48 -0.41 2.69 15
23 H 0.14 2.80 5.32 -52.48 -0.28 2.52 15
24 H 0.11 1.54 8.06 -52.48 -0.42 1.12 15
25 H 0.39 3.21 8.84 -40.82 -0.36 2.85 15
26 H 0.39 3.33 8.84 -40.82 -0.36 2.96 15
27 H 0.11 1.38 8.06 -52.49 -0.42 0.95 15
28 H 0.12 1.93 7.49 -52.49 -0.39 1.53 15
LS Contribution 251.19 15.07 3.79 3.79
Total: -1.00 -32.05 251.19 -4.94 -36.99
By element:
Atomic # 1 Polarization: 12.32 SS G_CDS: -2.07 Total: 10.24 kcal
Atomic # 6 Polarization: -16.56 SS G_CDS: -3.66 Total: -20.22 kcal
Atomic # 7 Polarization: -45.77 SS G_CDS: 2.02 Total: -43.74 kcal
Atomic # 14 Polarization: 17.96 SS G_CDS: -5.02 Total: 12.94 kcal
Total LS contribution 3.79 Total: 3.79 kcal
Total: -32.05 -4.94 -36.99 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000062296116.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 149.004 kcal
(2) G-P(sol) polarization free energy of solvation -32.050 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.954 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.942 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal
(6) G-S(sol) free energy of system = (1) + (5) 112.012 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds