Wall clock time and date at job start Mon Mar 30 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31240 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48496 * 109.47185 * 239.72843 * 3 2 1 5 5 H 1.48502 * 109.46920 * 359.72950 * 3 2 1 6 6 H 1.48503 * 109.46963 * 119.72855 * 3 2 1 7 7 C 1.39052 * 120.00213 * 179.72712 * 2 1 3 8 8 H 1.08000 * 120.00442 * 179.97438 * 7 2 1 9 9 N 1.37316 * 119.99796 * 0.02562 * 7 2 1 10 10 N 1.40314 * 126.94434 * 342.18570 * 9 7 2 11 11 N 1.28676 * 108.35663 * 179.82263 * 10 9 7 12 12 C 1.33063 * 110.34798 * 0.45320 * 11 10 9 13 13 C 1.36445 * 108.85545 * 359.71340 * 12 11 10 14 14 C 1.47766 * 126.83232 * 179.97438 * 13 12 11 15 15 C 1.39675 * 120.07097 * 157.29806 * 14 13 12 16 16 C 1.37761 * 119.93027 * 179.79194 * 15 14 13 17 17 C 1.39085 * 120.07091 * 0.48376 * 16 15 14 18 18 N 1.39508 * 119.93144 * 179.76691 * 17 16 15 19 19 C 1.39089 * 120.14216 * 359.74660 * 17 16 15 20 20 C 1.37769 * 120.06390 * 0.02562 * 19 17 16 21 21 H 0.97003 * 119.99729 * 0.26889 * 1 2 3 22 22 H 1.08004 * 125.56985 * 179.68691 * 12 11 10 23 23 H 1.08008 * 120.03094 * 0.02562 * 15 14 13 24 24 H 1.08010 * 119.96348 * 180.23138 * 16 15 14 25 25 H 0.96995 * 119.99820 * 179.97438 * 18 17 16 26 26 H 0.96998 * 119.99797 * 359.97438 * 18 17 16 27 27 H 1.08000 * 119.96511 * 179.97438 * 19 17 16 28 28 H 1.08001 * 120.03126 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 3.1052 1.6935 -1.2091 5 1 1.2815 2.7464 -0.0066 6 1 3.0952 1.6992 1.2158 7 6 2.0077 -1.2042 0.0057 8 1 3.0877 -1.2042 0.0053 9 7 1.3211 -2.3934 0.0109 10 7 -0.0253 -2.5883 0.3543 11 7 -0.2979 -3.8398 0.2308 12 6 0.7803 -4.5113 -0.1657 13 6 1.8157 -3.6351 -0.3137 14 6 3.1943 -3.9563 -0.7379 15 6 4.0041 -2.9643 -1.2956 16 6 5.2903 -3.2660 -1.6861 17 6 5.7793 -4.5592 -1.5348 18 7 7.0806 -4.8626 -1.9358 19 6 4.9739 -5.5505 -0.9843 20 6 3.6883 -5.2540 -0.5875 21 1 -0.4850 0.8401 -0.0039 22 1 0.8282 -5.5759 -0.3411 23 1 3.6235 -1.9608 -1.4170 24 1 5.9182 -2.4983 -2.1139 25 1 7.4228 -5.7641 -1.8304 26 1 7.6432 -4.1721 -2.3199 27 1 5.3564 -6.5539 -0.8685 28 1 3.0635 -6.0241 -0.1597 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062296116.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:01 Heat of formation + Delta-G solvation = 88.667006 kcal Electronic energy + Delta-G solvation = -15128.708301 eV Core-core repulsion = 12566.182077 eV Total energy + Delta-G solvation = -2562.526225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.03202 -39.88196 -36.16292 -35.48885 -33.30876 -31.81681 -31.22119 -28.32716 -27.68124 -23.91029 -23.60844 -22.45463 -21.26740 -19.78088 -17.80947 -17.67735 -17.39630 -16.43968 -16.12757 -15.84444 -15.03124 -14.62016 -14.47349 -14.26840 -14.00561 -13.54590 -13.40508 -13.06500 -12.74717 -12.16083 -11.83575 -11.80795 -11.66448 -11.49591 -11.11168 -10.57873 -9.75496 -9.54082 -8.73484 -8.06160 -6.60386 0.37983 0.65685 1.28964 1.35314 1.54148 1.68446 2.05267 2.26439 2.69539 2.85489 3.14439 3.22734 4.11606 4.16640 4.26261 4.41590 4.66785 4.66909 4.82162 4.96115 5.02371 5.12444 5.32690 5.49709 5.56979 5.90795 5.96342 6.02622 6.06896 6.56975 6.72086 7.14841 7.19772 8.18677 8.29628 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.024379 B = 0.009495 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.272802 B = 2948.267743 C = 4046.015836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.002 3.998 3 Si 1.020 2.980 4 H -0.243 1.243 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.335 4.335 8 H 0.146 0.854 9 N -0.156 5.156 10 N -0.163 5.163 11 N -0.359 5.359 12 C -0.093 4.093 13 C -0.049 4.049 14 C -0.072 4.072 15 C -0.090 4.090 16 C -0.198 4.198 17 C 0.212 3.788 18 N -0.864 5.864 19 C -0.193 4.193 20 C -0.064 4.064 21 H 0.289 0.711 22 H 0.187 0.813 23 H 0.120 0.880 24 H 0.140 0.860 25 H 0.408 0.592 26 H 0.406 0.594 27 H 0.150 0.850 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.796 -4.161 -4.402 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.214 4.214 3 Si 0.836 3.164 4 H -0.166 1.166 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.472 4.472 8 H 0.163 0.837 9 N 0.072 4.928 10 N -0.138 5.138 11 N -0.215 5.215 12 C -0.262 4.262 13 C -0.182 4.182 14 C -0.077 4.077 15 C -0.109 4.109 16 C -0.220 4.220 17 C 0.105 3.895 18 N -0.404 5.404 19 C -0.216 4.216 20 C -0.084 4.084 21 H 0.099 0.901 22 H 0.204 0.796 23 H 0.137 0.863 24 H 0.157 0.843 25 H 0.238 0.762 26 H 0.236 0.764 27 H 0.168 0.832 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.060 -3.383 -3.880 15.915 hybrid contribution 0.765 0.221 -0.280 0.844 sum 15.824 -3.161 -4.160 16.665 Atomic orbital electron populations 1.70244 1.08859 1.30792 1.33898 1.27145 0.96491 1.04774 0.92948 0.84648 0.77910 0.72833 0.80969 1.16619 1.19381 1.17480 1.20949 0.93586 0.80766 1.51854 0.83726 1.47030 1.08603 1.06179 1.31021 1.82317 0.93607 1.08225 1.29620 1.73744 1.27405 1.01560 1.18792 1.22953 0.88910 1.00879 1.13452 1.20534 0.96937 0.86155 1.14584 1.17772 0.89517 0.95584 1.04797 1.21386 0.94014 0.99294 0.96250 1.20620 0.96116 0.96336 1.08948 1.17886 0.86426 0.92736 0.92404 1.42315 1.11257 1.15410 1.71458 1.20679 0.93992 0.99875 1.07033 1.20998 0.95630 0.94333 0.97416 0.90067 0.79643 0.86258 0.84256 0.76226 0.76439 0.83213 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.81 12.07 21.67 0.26 -45.55 15 2 C 0.00 0.08 5.49 84.98 0.47 0.55 15 3 Si 1.02 36.77 29.55 68.60 2.03 38.80 15 4 H -0.24 -7.95 7.11 99.48 0.71 -7.25 15 5 H -0.27 -9.46 7.11 99.48 0.71 -8.75 15 6 H -0.25 -8.55 7.11 99.48 0.71 -7.85 15 7 C -0.34 -17.81 8.80 84.03 0.74 -17.07 15 8 H 0.15 6.83 5.59 -2.91 -0.02 6.81 15 9 N -0.16 -9.07 3.76 -179.75 -0.68 -9.75 15 10 N -0.16 -10.35 11.91 37.02 0.44 -9.91 15 11 N -0.36 -21.26 12.28 -57.99 -0.71 -21.97 15 12 C -0.09 -4.74 11.30 84.09 0.95 -3.79 15 13 C -0.05 -2.49 6.75 40.35 0.27 -2.21 15 14 C -0.07 -2.97 5.85 -20.06 -0.12 -3.09 15 15 C -0.09 -3.37 8.72 22.50 0.20 -3.17 15 16 C -0.20 -5.66 9.87 22.36 0.22 -5.44 15 17 C 0.21 5.14 6.76 38.33 0.26 5.40 15 18 N -0.86 -12.97 9.08 -51.26 -0.47 -13.44 15 19 C -0.19 -4.92 9.87 22.36 0.22 -4.70 15 20 C -0.06 -2.07 9.57 22.50 0.22 -1.86 15 21 H 0.29 14.77 8.31 -92.71 -0.77 14.00 15 22 H 0.19 7.63 7.75 -2.91 -0.02 7.61 15 23 H 0.12 4.86 5.32 -2.91 -0.02 4.85 15 24 H 0.14 3.21 8.06 -2.91 -0.02 3.19 15 25 H 0.41 4.24 8.84 -92.71 -0.82 3.42 15 26 H 0.41 4.62 8.84 -92.71 -0.82 3.80 15 27 H 0.15 2.75 8.06 -2.91 -0.02 2.73 15 28 H 0.13 3.89 7.49 -2.91 -0.02 3.87 15 Total: -1.00 -74.67 251.19 3.89 -70.78 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -0.41 Total: 26.42 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 3.42 Total: -35.38 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -1.15 Total: -100.62 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Total: -74.67 3.89 -70.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062296116.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.443 kcal (2) G-P(sol) polarization free energy of solvation -74.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds