Wall clock time and date at job start Mon Mar 30 2020 03:04:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31240 * 1
3 3 Si 1.86800 * 120.00182 * 2 1
4 4 H 1.48496 * 109.47185 * 239.72843 * 3 2 1
5 5 H 1.48502 * 109.46920 * 359.72950 * 3 2 1
6 6 H 1.48503 * 109.46963 * 119.72855 * 3 2 1
7 7 C 1.39052 * 120.00213 * 179.72712 * 2 1 3
8 8 H 1.08000 * 120.00442 * 179.97438 * 7 2 1
9 9 N 1.37316 * 119.99796 * 0.02562 * 7 2 1
10 10 N 1.40314 * 126.94434 * 342.18570 * 9 7 2
11 11 N 1.28676 * 108.35663 * 179.82263 * 10 9 7
12 12 C 1.33063 * 110.34798 * 0.45320 * 11 10 9
13 13 C 1.36445 * 108.85545 * 359.71340 * 12 11 10
14 14 C 1.47766 * 126.83232 * 179.97438 * 13 12 11
15 15 C 1.39675 * 120.07097 * 157.29806 * 14 13 12
16 16 C 1.37761 * 119.93027 * 179.79194 * 15 14 13
17 17 C 1.39085 * 120.07091 * 0.48376 * 16 15 14
18 18 N 1.39508 * 119.93144 * 179.76691 * 17 16 15
19 19 C 1.39089 * 120.14216 * 359.74660 * 17 16 15
20 20 C 1.37769 * 120.06390 * 0.02562 * 19 17 16
21 21 H 0.97003 * 119.99729 * 0.26889 * 1 2 3
22 22 H 1.08004 * 125.56985 * 179.68691 * 12 11 10
23 23 H 1.08008 * 120.03094 * 0.02562 * 15 14 13
24 24 H 1.08010 * 119.96348 * 180.23138 * 16 15 14
25 25 H 0.96995 * 119.99820 * 179.97438 * 18 17 16
26 26 H 0.96998 * 119.99797 * 359.97438 * 18 17 16
27 27 H 1.08000 * 119.96511 * 179.97438 * 19 17 16
28 28 H 1.08001 * 120.03126 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3124 0.0000 0.0000
3 14 2.2465 1.6177 0.0000
4 1 3.1052 1.6935 -1.2091
5 1 1.2815 2.7464 -0.0066
6 1 3.0952 1.6992 1.2158
7 6 2.0077 -1.2042 0.0057
8 1 3.0877 -1.2042 0.0053
9 7 1.3211 -2.3934 0.0109
10 7 -0.0253 -2.5883 0.3543
11 7 -0.2979 -3.8398 0.2308
12 6 0.7803 -4.5113 -0.1657
13 6 1.8157 -3.6351 -0.3137
14 6 3.1943 -3.9563 -0.7379
15 6 4.0041 -2.9643 -1.2956
16 6 5.2903 -3.2660 -1.6861
17 6 5.7793 -4.5592 -1.5348
18 7 7.0806 -4.8626 -1.9358
19 6 4.9739 -5.5505 -0.9843
20 6 3.6883 -5.2540 -0.5875
21 1 -0.4850 0.8401 -0.0039
22 1 0.8282 -5.5759 -0.3411
23 1 3.6235 -1.9608 -1.4170
24 1 5.9182 -2.4983 -2.1139
25 1 7.4228 -5.7641 -1.8304
26 1 7.6432 -4.1721 -2.3199
27 1 5.3564 -6.5539 -0.8685
28 1 3.0635 -6.0241 -0.1597
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000062296116.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:01
Heat of formation + Delta-G solvation = 88.667006 kcal
Electronic energy + Delta-G solvation = -15128.708301 eV
Core-core repulsion = 12566.182077 eV
Total energy + Delta-G solvation = -2562.526225 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.086 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-42.03202 -39.88196 -36.16292 -35.48885 -33.30876 -31.81681 -31.22119 -28.32716
-27.68124 -23.91029 -23.60844 -22.45463 -21.26740 -19.78088 -17.80947 -17.67735
-17.39630 -16.43968 -16.12757 -15.84444 -15.03124 -14.62016 -14.47349 -14.26840
-14.00561 -13.54590 -13.40508 -13.06500 -12.74717 -12.16083 -11.83575 -11.80795
-11.66448 -11.49591 -11.11168 -10.57873 -9.75496 -9.54082 -8.73484 -8.06160
-6.60386 0.37983 0.65685 1.28964 1.35314 1.54148 1.68446 2.05267
2.26439 2.69539 2.85489 3.14439 3.22734 4.11606 4.16640 4.26261
4.41590 4.66785 4.66909 4.82162 4.96115 5.02371 5.12444 5.32690
5.49709 5.56979 5.90795 5.96342 6.02622 6.06896 6.56975 6.72086
7.14841 7.19772 8.18677 8.29628
Molecular weight = 230.09amu
Principal moments of inertia in cm(-1)
A = 0.024379 B = 0.009495 C = 0.006919
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1148.272802 B = 2948.267743 C = 4046.015836
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.811 5.811
2 C 0.002 3.998
3 Si 1.020 2.980
4 H -0.243 1.243
5 H -0.270 1.270
6 H -0.251 1.251
7 C -0.335 4.335
8 H 0.146 0.854
9 N -0.156 5.156
10 N -0.163 5.163
11 N -0.359 5.359
12 C -0.093 4.093
13 C -0.049 4.049
14 C -0.072 4.072
15 C -0.090 4.090
16 C -0.198 4.198
17 C 0.212 3.788
18 N -0.864 5.864
19 C -0.193 4.193
20 C -0.064 4.064
21 H 0.289 0.711
22 H 0.187 0.813
23 H 0.120 0.880
24 H 0.140 0.860
25 H 0.408 0.592
26 H 0.406 0.594
27 H 0.150 0.850
28 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.796 -4.161 -4.402 17.855
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.438 5.438
2 C -0.214 4.214
3 Si 0.836 3.164
4 H -0.166 1.166
5 H -0.194 1.194
6 H -0.175 1.175
7 C -0.472 4.472
8 H 0.163 0.837
9 N 0.072 4.928
10 N -0.138 5.138
11 N -0.215 5.215
12 C -0.262 4.262
13 C -0.182 4.182
14 C -0.077 4.077
15 C -0.109 4.109
16 C -0.220 4.220
17 C 0.105 3.895
18 N -0.404 5.404
19 C -0.216 4.216
20 C -0.084 4.084
21 H 0.099 0.901
22 H 0.204 0.796
23 H 0.137 0.863
24 H 0.157 0.843
25 H 0.238 0.762
26 H 0.236 0.764
27 H 0.168 0.832
28 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 15.060 -3.383 -3.880 15.915
hybrid contribution 0.765 0.221 -0.280 0.844
sum 15.824 -3.161 -4.160 16.665
Atomic orbital electron populations
1.70244 1.08859 1.30792 1.33898 1.27145 0.96491 1.04774 0.92948
0.84648 0.77910 0.72833 0.80969 1.16619 1.19381 1.17480 1.20949
0.93586 0.80766 1.51854 0.83726 1.47030 1.08603 1.06179 1.31021
1.82317 0.93607 1.08225 1.29620 1.73744 1.27405 1.01560 1.18792
1.22953 0.88910 1.00879 1.13452 1.20534 0.96937 0.86155 1.14584
1.17772 0.89517 0.95584 1.04797 1.21386 0.94014 0.99294 0.96250
1.20620 0.96116 0.96336 1.08948 1.17886 0.86426 0.92736 0.92404
1.42315 1.11257 1.15410 1.71458 1.20679 0.93992 0.99875 1.07033
1.20998 0.95630 0.94333 0.97416 0.90067 0.79643 0.86258 0.84256
0.76226 0.76439 0.83213 0.85036
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -45.81 12.07 21.67 0.26 -45.55 15
2 C 0.00 0.08 5.49 84.98 0.47 0.55 15
3 Si 1.02 36.77 29.55 68.60 2.03 38.80 15
4 H -0.24 -7.95 7.11 99.48 0.71 -7.25 15
5 H -0.27 -9.46 7.11 99.48 0.71 -8.75 15
6 H -0.25 -8.55 7.11 99.48 0.71 -7.85 15
7 C -0.34 -17.81 8.80 84.03 0.74 -17.07 15
8 H 0.15 6.83 5.59 -2.91 -0.02 6.81 15
9 N -0.16 -9.07 3.76 -179.75 -0.68 -9.75 15
10 N -0.16 -10.35 11.91 37.02 0.44 -9.91 15
11 N -0.36 -21.26 12.28 -57.99 -0.71 -21.97 15
12 C -0.09 -4.74 11.30 84.09 0.95 -3.79 15
13 C -0.05 -2.49 6.75 40.35 0.27 -2.21 15
14 C -0.07 -2.97 5.85 -20.06 -0.12 -3.09 15
15 C -0.09 -3.37 8.72 22.50 0.20 -3.17 15
16 C -0.20 -5.66 9.87 22.36 0.22 -5.44 15
17 C 0.21 5.14 6.76 38.33 0.26 5.40 15
18 N -0.86 -12.97 9.08 -51.26 -0.47 -13.44 15
19 C -0.19 -4.92 9.87 22.36 0.22 -4.70 15
20 C -0.06 -2.07 9.57 22.50 0.22 -1.86 15
21 H 0.29 14.77 8.31 -92.71 -0.77 14.00 15
22 H 0.19 7.63 7.75 -2.91 -0.02 7.61 15
23 H 0.12 4.86 5.32 -2.91 -0.02 4.85 15
24 H 0.14 3.21 8.06 -2.91 -0.02 3.19 15
25 H 0.41 4.24 8.84 -92.71 -0.82 3.42 15
26 H 0.41 4.62 8.84 -92.71 -0.82 3.80 15
27 H 0.15 2.75 8.06 -2.91 -0.02 2.73 15
28 H 0.13 3.89 7.49 -2.91 -0.02 3.87 15
Total: -1.00 -74.67 251.19 3.89 -70.78
By element:
Atomic # 1 Polarization: 26.83 SS G_CDS: -0.41 Total: 26.42 kcal
Atomic # 6 Polarization: -38.80 SS G_CDS: 3.42 Total: -35.38 kcal
Atomic # 7 Polarization: -99.46 SS G_CDS: -1.15 Total: -100.62 kcal
Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal
Total: -74.67 3.89 -70.78 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000062296116.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 159.443 kcal
(2) G-P(sol) polarization free energy of solvation -74.665 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.778 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.776 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.667 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds