Wall clock time and date at job start Mon Mar 30 2020 03:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86797 * 120.00069 * 2 1 4 4 H 1.48494 * 109.47279 * 239.99974 * 3 2 1 5 5 H 1.48499 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46675 * 120.00445 * 3 2 1 7 7 C 1.40264 * 119.99562 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99754 * 179.97438 * 7 2 1 9 9 C 1.40366 * 120.00398 * 359.97438 * 7 2 1 10 10 N 1.33069 * 126.31519 * 359.97438 * 9 7 2 11 11 C 1.32237 * 109.79696 * 180.02562 * 10 9 7 12 12 C 1.50701 * 125.15330 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47064 * 90.00109 * 12 11 10 14 14 C 1.38650 * 120.78792 * 269.71450 * 13 12 11 15 15 C 1.38207 * 119.16129 * 179.79528 * 14 13 12 16 16 N 1.31868 * 120.76474 * 0.49389 * 15 14 13 17 17 C 1.31874 * 121.72157 * 359.73831 * 16 15 14 18 18 C 1.38199 * 120.77057 * 0.02562 * 17 16 15 19 19 N 1.31391 * 109.68506 * 0.22833 * 11 10 9 20 20 N 1.37030 * 126.31669 * 180.02562 * 9 7 2 21 21 H 0.96994 * 127.01876 * 0.02562 * 20 9 7 22 22 H 0.97003 * 119.99818 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 210.00073 * 12 11 10 24 24 H 1.09001 * 109.47380 * 330.00160 * 12 11 10 25 25 H 1.07998 * 120.42060 * 0.02562 * 14 13 12 26 26 H 1.07997 * 119.61581 * 180.20726 * 15 14 13 27 27 H 1.07998 * 119.61429 * 180.02562 * 17 16 15 28 28 H 1.07991 * 120.42226 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6964 -1.2124 5 1 1.2755 2.7465 0.0006 6 1 3.0943 1.6962 1.2125 7 6 2.0077 -1.2148 -0.0005 8 1 3.0878 -1.2148 -0.0010 9 6 1.3058 -2.4304 -0.0005 10 7 -0.0168 -2.5767 0.0004 11 6 -0.3251 -3.8627 0.0006 12 6 -1.7256 -4.4192 0.0022 13 6 -2.1940 -4.6045 -1.4181 14 6 -2.8597 -3.5870 -2.0844 15 6 -3.2707 -3.7918 -3.3879 16 7 -3.0449 -4.9411 -3.9937 17 6 -2.4192 -5.9323 -3.3894 18 6 -1.9748 -5.7988 -2.0876 19 7 0.7748 -4.5815 0.0048 20 7 1.8563 -3.6853 -0.0005 21 1 2.8000 -3.9090 -0.0002 22 1 -0.4850 0.8401 0.0004 23 1 -1.7340 -5.3805 0.5160 24 1 -2.3913 -3.7263 0.5169 25 1 -3.0513 -2.6450 -1.5923 26 1 -3.7868 -3.0030 -3.9150 27 1 -2.2520 -6.8591 -3.9180 28 1 -1.4634 -6.6142 -1.5980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070584240.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:40 Heat of formation + Delta-G solvation = 101.256141 kcal Electronic energy + Delta-G solvation = -14951.040216 eV Core-core repulsion = 12389.059897 eV Total energy + Delta-G solvation = -2561.980319 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.98719 -39.45256 -34.17383 -33.44650 -30.81490 -30.66430 -29.56338 -27.35574 -25.65067 -23.04580 -22.04568 -20.62048 -18.93724 -17.15864 -16.26763 -16.03613 -15.70638 -15.17871 -14.73950 -13.89004 -13.46385 -13.37877 -13.19598 -12.49777 -12.16943 -11.96530 -11.69387 -11.27450 -11.00780 -10.86902 -10.42038 -9.98230 -9.49021 -9.18683 -9.13148 -8.76086 -8.28720 -7.87299 -7.84807 -6.64925 -4.75004 1.53131 1.64532 2.93121 3.05295 3.06609 3.40835 3.86812 4.16247 4.43715 4.51916 4.78821 5.13207 5.18356 5.46709 5.53044 5.58122 5.68084 5.81335 6.01476 6.18826 6.29702 6.41555 6.70356 6.91062 7.08757 7.12529 7.58282 7.93868 8.24869 8.30269 8.34716 8.70577 9.15701 10.14964 10.29282 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.032246 B = 0.007243 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.113864 B = 3864.917303 C = 4363.039155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.084 3.916 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.454 4.454 8 H 0.085 0.915 9 C 0.408 3.592 10 N -0.554 5.554 11 C 0.214 3.786 12 C 0.019 3.981 13 C -0.018 4.018 14 C -0.149 4.149 15 C 0.089 3.911 16 N -0.496 5.496 17 C 0.086 3.914 18 C -0.163 4.163 19 N -0.409 5.409 20 N -0.564 5.564 21 H 0.413 0.587 22 H 0.277 0.723 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.140 0.860 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 -3.433 -1.870 5.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.143 4.143 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.103 0.897 9 C 0.159 3.841 10 N -0.290 5.290 11 C -0.070 4.070 12 C -0.021 4.021 13 C -0.027 4.027 14 C -0.169 4.169 15 C -0.067 4.067 16 N -0.206 5.206 17 C -0.070 4.070 18 C -0.183 4.183 19 N -0.245 5.245 20 N -0.283 5.283 21 H 0.255 0.745 22 H 0.088 0.912 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.158 0.842 26 H 0.168 0.832 27 H 0.166 0.834 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.475 -3.962 -2.715 6.565 hybrid contribution 1.644 0.951 0.872 2.090 sum -2.831 -3.011 -1.843 4.526 Atomic orbital electron populations 1.69965 1.07108 1.28419 1.29504 1.25802 0.94888 1.00661 0.92983 0.86241 0.79867 0.80006 0.79794 1.18980 1.20110 1.18976 1.18352 0.93853 0.87471 1.49860 0.89697 1.20961 0.87806 0.85579 0.89795 1.71279 1.11113 1.13984 1.32589 1.23291 0.93579 0.90665 0.99422 1.18643 0.90404 1.01066 0.91948 1.20202 0.93167 0.92955 0.96402 1.22158 0.98765 0.99943 0.96064 1.22661 0.97305 0.94506 0.92251 1.67591 1.13905 1.01055 1.38043 1.22596 0.94802 0.97416 0.92204 1.22044 1.01240 0.98668 0.96297 1.77575 0.93981 1.16089 1.36884 1.48011 1.07068 1.04800 1.68385 0.74536 0.91162 0.89944 0.88911 0.84241 0.83151 0.83350 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.90 11.93 55.56 0.66 -18.23 15 2 C 0.08 2.07 5.50 -17.30 -0.10 1.97 15 3 Si 0.92 18.02 29.56 -169.99 -5.03 13.00 15 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 15 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 7 C -0.45 -11.76 9.47 -38.02 -0.36 -12.12 15 8 H 0.08 2.00 7.85 -52.48 -0.41 1.59 15 9 C 0.41 11.09 7.70 -155.87 -1.20 9.89 15 10 N -0.55 -15.22 9.40 -10.11 -0.10 -15.31 15 11 C 0.21 5.25 7.32 -157.16 -1.15 4.10 15 12 C 0.02 0.37 6.02 -29.03 -0.17 0.19 15 13 C -0.02 -0.32 5.15 -104.32 -0.54 -0.86 15 14 C -0.15 -2.61 9.82 -39.44 -0.39 -2.99 15 15 C 0.09 1.45 11.18 -17.55 -0.20 1.25 15 16 N -0.50 -8.40 10.36 -13.25 -0.14 -8.54 15 17 C 0.09 1.35 11.18 -17.55 -0.20 1.15 15 18 C -0.16 -2.67 9.82 -39.44 -0.39 -3.05 15 19 N -0.41 -10.19 12.80 32.36 0.41 -9.78 15 20 N -0.56 -13.91 7.58 31.11 0.24 -13.68 15 21 H 0.41 8.73 8.96 -182.33 -1.63 7.09 15 22 H 0.28 6.52 8.29 -40.82 -0.34 6.18 15 23 H 0.08 1.39 8.10 -51.93 -0.42 0.97 15 24 H 0.09 1.69 8.10 -51.93 -0.42 1.27 15 25 H 0.14 2.39 8.06 -52.49 -0.42 1.97 15 26 H 0.15 2.01 8.06 -52.49 -0.42 1.58 15 27 H 0.15 1.83 8.06 -52.49 -0.42 1.41 15 28 H 0.13 1.96 8.06 -52.49 -0.42 1.53 15 LS Contribution 259.66 15.07 3.91 3.91 Total: -1.00 -31.44 259.66 -8.43 -39.87 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -3.71 Total: 9.23 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -4.69 Total: -0.47 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: 1.08 Total: -65.54 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.44 -8.43 -39.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070584240.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.123 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds