Wall clock time and date at job start Mon Mar 30 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86797 * 120.00452 * 2 1 4 4 H 1.48500 * 109.47013 * 270.00606 * 3 2 1 5 5 H 1.48506 * 109.46532 * 30.00087 * 3 2 1 6 6 H 1.48495 * 109.47524 * 150.00039 * 3 2 1 7 7 C 1.40276 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99720 * 179.97438 * 7 2 1 9 9 C 1.40366 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.33068 * 126.32184 * 0.35155 * 9 7 2 11 11 C 1.32226 * 109.80219 * 180.13655 * 10 9 7 12 12 C 1.50707 * 125.15722 * 179.82287 * 11 10 9 13 13 C 1.50700 * 109.46642 * 269.71896 * 12 11 10 14 14 C 1.38665 * 120.42087 * 90.00183 * 13 12 11 15 15 C 1.38635 * 118.42109 * 180.02562 * 14 13 12 16 16 C 1.38221 * 119.16284 * 359.97438 * 15 14 13 17 17 N 1.31862 * 120.76221 * 359.97438 * 16 15 14 18 18 C 1.31881 * 121.72315 * 0.04192 * 17 16 15 19 19 N 1.31393 * 109.68677 * 359.55397 * 11 10 9 20 20 N 1.37032 * 126.31501 * 179.97438 * 9 7 2 21 21 H 0.96994 * 127.01717 * 0.02562 * 20 9 7 22 22 H 0.96993 * 119.99564 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46878 * 149.71890 * 12 11 10 24 24 H 1.08999 * 109.46909 * 29.71710 * 12 11 10 25 25 H 1.08003 * 120.79081 * 359.97438 * 14 13 12 26 26 H 1.08004 * 120.41715 * 179.72666 * 15 14 13 27 27 H 1.07993 * 119.62150 * 180.02562 * 16 15 14 28 28 H 1.08011 * 119.61586 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 2.4880 2.0463 -1.4001 5 1 1.4380 2.6526 0.7001 6 1 3.5381 1.4401 0.7000 7 6 2.0078 -1.2148 -0.0005 8 1 3.0878 -1.2148 -0.0010 9 6 1.3059 -2.4304 -0.0016 10 7 -0.0167 -2.5768 -0.0088 11 6 -0.3250 -3.8626 -0.0045 12 6 -1.7256 -4.4192 -0.0064 13 6 -2.1939 -4.6054 1.4138 14 6 -2.8537 -3.5809 2.0755 15 6 -3.2660 -3.7969 3.3815 16 6 -3.0079 -5.0177 3.9761 17 7 -2.3785 -5.9698 3.3158 18 6 -1.9719 -5.7995 2.0729 19 7 0.7748 -4.5816 -0.0042 20 7 1.8563 -3.6853 -0.0028 21 1 2.8001 -3.9091 -0.0026 22 1 -0.4849 0.8400 0.0004 23 1 -1.7339 -5.3801 -0.5207 24 1 -2.3913 -3.7260 -0.5206 25 1 -3.0413 -2.6369 1.5856 26 1 -3.7787 -3.0196 3.9286 27 1 -3.3261 -5.1940 4.9929 28 1 -1.4590 -6.6025 1.5642 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070584252.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:13 Heat of formation + Delta-G solvation = 101.334772 kcal Electronic energy + Delta-G solvation = -14958.656904 eV Core-core repulsion = 12396.679995 eV Total energy + Delta-G solvation = -2561.976909 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98741 -39.44551 -34.00318 -33.33725 -31.63349 -30.35900 -29.50571 -27.01227 -25.59701 -23.13862 -22.05913 -20.59605 -18.86213 -17.14524 -16.68606 -16.09891 -15.73043 -14.89224 -14.72016 -13.85080 -13.48165 -13.25871 -12.80707 -12.60290 -12.39367 -11.91083 -11.64021 -11.31853 -11.10660 -10.87267 -10.39272 -9.96302 -9.48678 -9.37610 -9.12751 -8.61484 -8.24496 -7.85645 -7.82322 -6.64572 -4.73814 1.47316 1.69214 2.91763 3.05507 3.08287 3.42634 3.87138 4.15009 4.45559 4.54214 4.80023 5.17876 5.27614 5.39656 5.46411 5.51876 5.69349 5.78848 6.04856 6.14426 6.33219 6.52194 6.68443 6.89273 7.07580 7.13172 7.60236 7.95669 8.26971 8.30536 8.37270 8.71764 9.17537 10.16693 10.30275 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.032498 B = 0.007246 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.385250 B = 3863.086866 C = 4354.542596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.084 3.916 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.454 4.454 8 H 0.085 0.915 9 C 0.408 3.592 10 N -0.554 5.554 11 C 0.213 3.787 12 C 0.025 3.975 13 C -0.110 4.110 14 C -0.056 4.056 15 C -0.177 4.177 16 C 0.081 3.919 17 N -0.492 5.492 18 C 0.105 3.895 19 N -0.409 5.409 20 N -0.564 5.564 21 H 0.413 0.587 22 H 0.276 0.724 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.139 0.861 26 H 0.130 0.870 27 H 0.148 0.852 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -2.029 2.828 5.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.103 0.897 9 C 0.158 3.842 10 N -0.291 5.291 11 C -0.070 4.070 12 C -0.015 4.015 13 C -0.113 4.113 14 C -0.082 4.082 15 C -0.197 4.197 16 C -0.075 4.075 17 N -0.200 5.200 18 C -0.052 4.052 19 N -0.245 5.245 20 N -0.282 5.282 21 H 0.255 0.745 22 H 0.087 0.913 23 H 0.100 0.900 24 H 0.109 0.891 25 H 0.157 0.843 26 H 0.148 0.852 27 H 0.166 0.834 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.003 -3.252 3.234 6.787 hybrid contribution 1.141 1.735 -0.355 2.106 sum -3.862 -1.517 2.879 5.051 Atomic orbital electron populations 1.69977 1.07109 1.28245 1.29768 1.25806 0.94876 1.00657 0.92967 0.86190 0.80190 0.80384 0.79190 1.19383 1.20054 1.18659 1.18384 0.93870 0.87464 1.49843 0.89675 1.20969 0.87834 0.85586 0.89801 1.71267 1.11106 1.14063 1.32622 1.23379 0.93739 0.90626 0.99263 1.18544 0.90159 1.00953 0.91868 1.20789 0.97916 0.94796 0.97834 1.21617 0.93821 0.98651 0.94080 1.22088 1.02614 0.98803 0.96174 1.22619 0.95706 0.89721 0.99498 1.67643 1.10474 1.33202 1.08713 1.22646 0.95782 0.96443 0.90308 1.77585 0.93982 1.16080 1.36825 1.48018 1.07088 1.04807 1.68333 0.74545 0.91275 0.89990 0.89120 0.84288 0.85232 0.83445 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.92 11.93 55.56 0.66 -18.26 15 2 C 0.08 2.07 5.50 -17.29 -0.10 1.98 15 3 Si 0.92 18.04 29.56 -169.99 -5.03 13.01 15 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 15 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 7 C -0.45 -11.80 9.47 -38.02 -0.36 -12.16 15 8 H 0.09 2.02 7.85 -52.49 -0.41 1.61 15 9 C 0.41 11.11 7.70 -155.87 -1.20 9.91 15 10 N -0.55 -15.26 9.40 -10.11 -0.10 -15.35 15 11 C 0.21 5.25 7.32 -157.16 -1.15 4.10 15 12 C 0.03 0.48 6.00 -29.03 -0.17 0.31 15 13 C -0.11 -2.00 5.13 -104.48 -0.54 -2.54 15 14 C -0.06 -0.96 9.86 -39.28 -0.39 -1.34 15 15 C -0.18 -2.64 10.11 -39.44 -0.40 -3.04 15 16 C 0.08 1.23 11.18 -17.54 -0.20 1.04 15 17 N -0.49 -8.57 10.36 -13.25 -0.14 -8.71 15 18 C 0.11 1.86 10.86 -17.55 -0.19 1.67 15 19 N -0.41 -10.24 12.80 32.36 0.41 -9.83 15 20 N -0.56 -13.99 7.58 31.11 0.24 -13.75 15 21 H 0.41 8.79 8.96 -182.33 -1.63 7.16 15 22 H 0.28 6.48 8.29 -40.82 -0.34 6.14 15 23 H 0.08 1.38 8.09 -51.93 -0.42 0.96 15 24 H 0.09 1.65 8.10 -51.93 -0.42 1.23 15 25 H 0.14 2.36 8.06 -52.48 -0.42 1.94 15 26 H 0.13 1.55 8.06 -52.48 -0.42 1.12 15 27 H 0.15 1.73 8.06 -52.49 -0.42 1.31 15 28 H 0.15 2.49 8.06 -52.48 -0.42 2.07 15 LS Contribution 259.62 15.07 3.91 3.91 Total: -1.00 -31.50 259.62 -8.43 -39.93 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -3.71 Total: 9.13 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -4.69 Total: -0.09 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: 1.08 Total: -65.90 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.50 -8.43 -39.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070584252.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.265 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds