Wall clock time and date at job start Mon Mar 30 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86797 * 120.00452 * 2 1 4 4 H 1.48500 * 109.47013 * 270.00606 * 3 2 1 5 5 H 1.48506 * 109.46532 * 30.00087 * 3 2 1 6 6 H 1.48495 * 109.47524 * 150.00039 * 3 2 1 7 7 C 1.40276 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99720 * 179.97438 * 7 2 1 9 9 C 1.40366 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.33068 * 126.32184 * 0.35155 * 9 7 2 11 11 C 1.32226 * 109.80219 * 180.13655 * 10 9 7 12 12 C 1.50707 * 125.15722 * 179.82287 * 11 10 9 13 13 C 1.50700 * 109.46642 * 269.71896 * 12 11 10 14 14 C 1.38665 * 120.42087 * 90.00183 * 13 12 11 15 15 C 1.38635 * 118.42109 * 180.02562 * 14 13 12 16 16 C 1.38221 * 119.16284 * 359.97438 * 15 14 13 17 17 N 1.31862 * 120.76221 * 359.97438 * 16 15 14 18 18 C 1.31881 * 121.72315 * 0.04192 * 17 16 15 19 19 N 1.31393 * 109.68677 * 359.55397 * 11 10 9 20 20 N 1.37032 * 126.31501 * 179.97438 * 9 7 2 21 21 H 0.96994 * 127.01717 * 0.02562 * 20 9 7 22 22 H 0.96993 * 119.99564 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46878 * 149.71890 * 12 11 10 24 24 H 1.08999 * 109.46909 * 29.71710 * 12 11 10 25 25 H 1.08003 * 120.79081 * 359.97438 * 14 13 12 26 26 H 1.08004 * 120.41715 * 179.72666 * 15 14 13 27 27 H 1.07993 * 119.62150 * 180.02562 * 16 15 14 28 28 H 1.08011 * 119.61586 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 2.4880 2.0463 -1.4001 5 1 1.4380 2.6526 0.7001 6 1 3.5381 1.4401 0.7000 7 6 2.0078 -1.2148 -0.0005 8 1 3.0878 -1.2148 -0.0010 9 6 1.3059 -2.4304 -0.0016 10 7 -0.0167 -2.5768 -0.0088 11 6 -0.3250 -3.8626 -0.0045 12 6 -1.7256 -4.4192 -0.0064 13 6 -2.1939 -4.6054 1.4138 14 6 -2.8537 -3.5809 2.0755 15 6 -3.2660 -3.7969 3.3815 16 6 -3.0079 -5.0177 3.9761 17 7 -2.3785 -5.9698 3.3158 18 6 -1.9719 -5.7995 2.0729 19 7 0.7748 -4.5816 -0.0042 20 7 1.8563 -3.6853 -0.0028 21 1 2.8001 -3.9091 -0.0026 22 1 -0.4849 0.8400 0.0004 23 1 -1.7339 -5.3801 -0.5207 24 1 -2.3913 -3.7260 -0.5206 25 1 -3.0413 -2.6369 1.5856 26 1 -3.7787 -3.0196 3.9286 27 1 -3.3261 -5.1940 4.9929 28 1 -1.4590 -6.6025 1.5642 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070584252.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:13 Heat of formation + Delta-G solvation = 81.169131 kcal Electronic energy + Delta-G solvation = -14959.531352 eV Core-core repulsion = 12396.679995 eV Total energy + Delta-G solvation = -2562.851357 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.75023 -40.89909 -35.73667 -34.97962 -32.96500 -32.11398 -31.42174 -28.61828 -27.45167 -24.43777 -23.45676 -22.52078 -20.65624 -19.07342 -18.01036 -17.84053 -17.16521 -16.44988 -16.27510 -15.40522 -15.11721 -14.89522 -14.24416 -14.02063 -13.88679 -13.59836 -13.23027 -12.90072 -12.65256 -12.44990 -12.11164 -11.80875 -11.28029 -10.68983 -10.47420 -10.17432 -9.91282 -9.83566 -9.76934 -8.50117 -6.72200 0.19325 0.38305 1.23766 1.45458 1.59789 1.66971 2.21917 2.57312 2.66257 2.93548 3.42773 3.60020 3.91798 4.00053 4.02785 4.14061 4.16857 4.44979 4.69457 4.80273 4.89477 4.99866 5.23456 5.25671 5.47067 5.69510 5.82484 6.05068 6.33398 6.48894 6.79362 7.03098 7.27467 8.23629 8.45455 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.032498 B = 0.007246 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.385250 B = 3863.086866 C = 4354.542596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.039 3.961 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.478 4.478 8 H 0.099 0.901 9 C 0.379 3.621 10 N -0.587 5.587 11 C 0.208 3.792 12 C 0.030 3.970 13 C -0.126 4.126 14 C -0.071 4.071 15 C -0.170 4.170 16 C 0.082 3.918 17 N -0.509 5.509 18 C 0.095 3.905 19 N -0.422 5.422 20 N -0.565 5.565 21 H 0.425 0.575 22 H 0.285 0.715 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.134 0.866 26 H 0.164 0.836 27 H 0.186 0.814 28 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 -1.068 3.805 6.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.185 4.185 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.519 4.519 8 H 0.117 0.883 9 C 0.129 3.871 10 N -0.323 5.323 11 C -0.076 4.076 12 C -0.010 4.010 13 C -0.130 4.130 14 C -0.097 4.097 15 C -0.189 4.189 16 C -0.074 4.074 17 N -0.218 5.218 18 C -0.061 4.061 19 N -0.258 5.258 20 N -0.285 5.285 21 H 0.268 0.732 22 H 0.095 0.905 23 H 0.120 0.880 24 H 0.112 0.888 25 H 0.152 0.848 26 H 0.181 0.819 27 H 0.203 0.797 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.096 -2.329 4.205 7.006 hybrid contribution 1.125 1.405 -0.611 1.901 sum -3.971 -0.924 3.594 5.435 Atomic orbital electron populations 1.70068 1.08957 1.29903 1.29869 1.26851 0.95724 1.04176 0.91753 0.84943 0.78717 0.74934 0.79447 1.18675 1.19261 1.17855 1.18907 0.94840 0.87960 1.50234 0.88271 1.21431 0.88466 0.86632 0.90563 1.71240 1.11639 1.15633 1.33829 1.24242 0.95621 0.89909 0.97823 1.18643 0.87410 1.01694 0.93286 1.20714 0.99247 0.95598 0.97397 1.21768 0.94336 0.98285 0.95337 1.22444 1.01646 0.99642 0.95197 1.23286 0.94207 0.89134 1.00803 1.67693 1.11229 1.34274 1.08606 1.22737 0.96144 0.96497 0.90743 1.77514 0.94287 1.16515 1.37451 1.47985 1.07782 1.04322 1.68415 0.73162 0.90455 0.88012 0.88755 0.84827 0.81882 0.79707 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -39.88 11.93 21.88 0.26 -39.62 15 2 C 0.04 1.89 5.50 85.36 0.47 2.36 15 3 Si 1.00 36.11 29.56 68.60 2.03 38.14 15 4 H -0.26 -9.14 7.11 99.48 0.71 -8.43 15 5 H -0.27 -9.27 7.11 99.48 0.71 -8.57 15 6 H -0.26 -8.81 7.11 99.48 0.71 -8.11 15 7 C -0.48 -24.90 9.47 23.28 0.22 -24.68 15 8 H 0.10 4.67 7.85 -2.91 -0.02 4.65 15 9 C 0.38 20.95 7.70 133.82 1.03 21.98 15 10 N -0.59 -32.88 9.40 -185.90 -1.75 -34.63 15 11 C 0.21 10.35 7.32 138.74 1.02 11.36 15 12 C 0.03 1.16 6.00 29.10 0.17 1.33 15 13 C -0.13 -4.58 5.13 -19.77 -0.10 -4.68 15 14 C -0.07 -2.40 9.86 22.47 0.22 -2.18 15 15 C -0.17 -4.70 10.11 22.36 0.23 -4.47 15 16 C 0.08 2.29 11.18 84.68 0.95 3.23 15 17 N -0.51 -17.02 10.36 -195.84 -2.03 -19.05 15 18 C 0.09 3.31 10.86 84.67 0.92 4.23 15 19 N -0.42 -21.38 12.80 -51.55 -0.66 -22.04 15 20 N -0.56 -28.39 7.58 -55.50 -0.42 -28.82 15 21 H 0.43 18.30 8.96 -213.09 -1.91 16.39 15 22 H 0.28 13.31 8.29 -92.71 -0.77 12.54 15 23 H 0.10 3.41 8.09 -2.39 -0.02 3.39 15 24 H 0.09 3.49 8.10 -2.39 -0.02 3.47 15 25 H 0.13 4.57 8.06 -2.91 -0.02 4.55 15 26 H 0.16 3.33 8.06 -2.91 -0.02 3.31 15 27 H 0.19 3.61 8.06 -2.91 -0.02 3.59 15 28 H 0.16 5.12 8.06 -2.91 -0.02 5.10 15 Total: -1.00 -67.49 259.62 1.84 -65.65 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: -0.71 Total: 31.88 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 5.12 Total: 8.49 kcal Atomic # 7 Polarization: -139.55 SS G_CDS: -4.60 Total: -144.15 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -67.49 1.84 -65.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070584252.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.815 kcal (2) G-P(sol) polarization free energy of solvation -67.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds