Wall clock time and date at job start Mon Mar 30 2020 03:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38635 * 119.85719 * 2 1 4 4 N 1.31868 * 120.16820 * 179.74583 * 3 2 1 5 5 C 1.33321 * 119.87426 * 359.97438 * 4 3 2 6 6 C 1.47444 * 120.14329 * 179.97438 * 5 4 3 7 7 N 1.32146 * 125.39965 * 180.02562 * 6 5 4 8 8 C 1.32318 * 110.03849 * 179.97438 * 7 6 5 9 9 C 1.40094 * 107.88564 * 359.97438 * 8 7 6 10 10 C 1.39692 * 126.95676 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00208 * 179.97438 * 10 9 8 12 12 C 1.40225 * 119.99729 * 359.97438 * 10 9 8 13 13 N 1.30757 * 120.00307 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99992 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47028 * 89.99443 * 14 12 10 16 16 H 1.48496 * 109.46948 * 209.99829 * 14 12 10 17 17 H 1.48498 * 109.46678 * 329.99648 * 14 12 10 18 18 N 1.36729 * 125.39275 * 359.71339 * 6 5 4 19 19 H 0.96999 * 126.61071 * 0.03994 * 18 6 5 20 20 C 1.39864 * 119.71869 * 359.97438 * 5 4 3 21 21 N 1.31952 * 119.82987 * 0.02562 * 20 5 4 22 22 H 1.09001 * 109.47229 * 89.99843 * 1 2 3 23 23 H 1.09000 * 109.47233 * 209.99449 * 1 2 3 24 24 H 1.08996 * 109.47185 * 330.00045 * 1 2 3 25 25 H 1.08002 * 119.91447 * 359.72502 * 3 2 1 26 26 H 1.08002 * 126.05985 * 179.97438 * 8 7 6 27 27 H 0.97001 * 119.99972 * 180.02562 * 13 12 10 28 28 H 1.07998 * 120.08522 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.2023 0.0000 4 7 3.5158 1.2095 0.0051 5 6 4.1861 0.0571 0.0107 6 6 5.6606 0.0582 0.0158 7 7 6.4268 -1.0184 0.0211 8 6 7.7025 -0.6670 0.0241 9 6 7.7632 0.7326 0.0199 10 6 8.9148 1.5233 0.0216 11 1 8.8306 2.6001 0.0175 12 6 10.1801 0.9190 0.0287 13 7 10.2821 -0.3845 0.0342 14 14 11.7202 1.9764 0.0303 15 1 12.1229 2.2621 1.4308 16 1 12.8171 1.2542 -0.6628 17 1 11.4445 3.2533 -0.6758 18 7 6.4517 1.1733 0.0098 19 1 6.1513 2.0956 0.0020 20 6 3.4848 -1.1530 0.0118 21 7 2.1653 -1.1469 0.0067 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5137 24 1 -0.3633 0.8900 0.5138 25 1 1.6534 2.1355 -0.0045 26 1 8.5473 -1.3399 0.0289 27 1 11.1574 -0.8025 0.0395 28 1 4.0218 -2.0900 0.0159 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074236213.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:50 Heat of formation + Delta-G solvation = 78.728094 kcal Electronic energy + Delta-G solvation = -14692.275825 eV Core-core repulsion = 12129.318617 eV Total energy + Delta-G solvation = -2562.957208 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55255 -39.66430 -34.24677 -33.80914 -32.45138 -31.11319 -29.25247 -27.51327 -24.72384 -23.94348 -22.35001 -20.19285 -19.55686 -18.08141 -17.01756 -15.94410 -15.52654 -15.25336 -14.67877 -14.35375 -13.43494 -13.06049 -12.96012 -12.49087 -12.40933 -12.24628 -12.08725 -11.45710 -11.27951 -11.06609 -11.00672 -10.64540 -10.49886 -9.74255 -8.90562 -8.69537 -8.59740 -8.50226 -7.03284 -6.98394 -4.50260 1.12623 1.63671 2.80444 2.93973 2.98151 3.41918 3.70523 4.10667 4.37227 4.60488 4.64161 4.76093 5.01517 5.13047 5.23075 5.55128 5.65252 5.76508 5.91552 6.03162 6.19853 6.69427 6.80283 6.95646 7.29430 7.39029 7.66784 7.86848 8.14900 8.33522 8.51753 8.66068 8.98872 9.59045 9.95293 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.077804 B = 0.005314 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.791924 B = 5268.329559 C = 5612.975939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.011 3.989 3 C 0.070 3.930 4 N -0.473 5.473 5 C 0.201 3.799 6 C 0.076 3.924 7 N -0.439 5.439 8 C -0.096 4.096 9 C 0.207 3.793 10 C -0.430 4.430 11 H 0.080 0.920 12 C 0.074 3.926 13 N -0.782 5.782 14 Si 0.934 3.066 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.261 1.261 18 N -0.598 5.598 19 H 0.406 0.594 20 C 0.055 3.945 21 N -0.433 5.433 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.158 0.842 26 H 0.195 0.805 27 H 0.287 0.713 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 3.066 -0.030 7.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C -0.093 4.093 4 N -0.189 5.189 5 C 0.065 3.935 6 C -0.165 4.165 7 N -0.159 5.159 8 C -0.255 4.255 9 C 0.090 3.910 10 C -0.465 4.465 11 H 0.099 0.901 12 C -0.146 4.146 13 N -0.408 5.408 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.198 1.198 17 H -0.185 1.185 18 N -0.210 5.210 19 H 0.242 0.758 20 C -0.110 4.110 21 N -0.147 5.147 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.175 0.825 26 H 0.211 0.789 27 H 0.099 0.901 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.577 1.982 -0.033 7.832 hybrid contribution 0.906 1.804 -0.012 2.019 sum -6.672 3.786 -0.044 7.671 Atomic orbital electron populations 1.20479 0.88719 1.02893 1.02430 1.22005 0.97784 0.89993 1.03089 1.23304 0.90496 0.98540 0.96954 1.68379 1.08390 1.29116 1.13025 1.19386 0.90960 0.89612 0.93563 1.19304 0.88097 0.83329 1.25768 1.69452 1.04447 1.28409 1.13585 1.23739 0.92127 0.93025 1.16623 1.19315 0.82207 0.94635 0.94875 1.18583 0.88654 0.94383 1.44885 0.90137 1.25868 1.01057 0.95445 0.92269 1.69510 1.27060 1.10289 1.33949 0.85882 0.78957 0.80000 0.79414 1.19161 1.19770 1.18540 1.42914 1.06106 1.07900 1.64093 0.75811 1.23529 0.89280 0.99235 0.98928 1.68148 1.08831 1.29047 1.08662 0.91107 0.90958 0.91135 0.82488 0.78872 0.90120 0.80975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 10.19 36.00 0.37 -0.59 15 2 C 0.01 0.17 6.79 -82.27 -0.56 -0.39 15 3 C 0.07 1.12 10.87 -17.39 -0.19 0.93 15 4 N -0.47 -9.38 10.44 -9.66 -0.10 -9.48 15 5 C 0.20 4.38 6.75 -82.86 -0.56 3.82 15 6 C 0.08 1.86 7.85 -154.00 -1.21 0.66 15 7 N -0.44 -11.38 10.75 -10.19 -0.11 -11.49 15 8 C -0.10 -2.55 10.86 -16.65 -0.18 -2.73 15 9 C 0.21 5.35 6.95 -83.68 -0.58 4.77 15 10 C -0.43 -10.54 9.44 -38.29 -0.36 -10.91 15 11 H 0.08 1.84 7.85 -52.48 -0.41 1.43 15 12 C 0.07 1.71 5.50 -17.26 -0.09 1.61 15 13 N -0.78 -18.56 10.32 55.56 0.57 -17.98 15 14 Si 0.93 17.14 29.56 -169.99 -5.03 12.12 15 15 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 16 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15 17 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 18 N -0.60 -14.38 6.27 -8.23 -0.05 -14.43 15 19 H 0.41 8.79 8.96 -40.82 -0.37 8.42 15 20 C 0.05 1.10 10.87 -16.89 -0.18 0.92 15 21 N -0.43 -7.98 10.41 -8.87 -0.09 -8.07 15 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.07 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.07 0.60 8.08 -51.93 -0.42 0.18 15 25 H 0.16 1.89 8.06 -52.49 -0.42 1.47 15 26 H 0.19 5.20 5.75 -52.49 -0.30 4.89 15 27 H 0.29 6.10 8.29 -40.82 -0.34 5.76 15 28 H 0.17 3.39 7.82 -52.49 -0.41 2.98 15 LS Contribution 256.23 15.07 3.86 3.86 Total: -1.00 -28.11 256.23 -6.81 -34.92 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -2.31 Total: 12.48 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -3.55 Total: -1.91 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.22 Total: -61.47 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.11 -6.81 -34.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074236213.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.644 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds