Wall clock time and date at job start Mon Mar 30 2020 03:11:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38635 * 119.85719 * 2 1
4 4 N 1.31868 * 120.16820 * 179.74583 * 3 2 1
5 5 C 1.33321 * 119.87426 * 359.97438 * 4 3 2
6 6 C 1.47444 * 120.14329 * 179.97438 * 5 4 3
7 7 N 1.32146 * 125.39965 * 180.02562 * 6 5 4
8 8 C 1.32318 * 110.03849 * 179.97438 * 7 6 5
9 9 C 1.40094 * 107.88564 * 359.97438 * 8 7 6
10 10 C 1.39692 * 126.95676 * 179.97438 * 9 8 7
11 11 H 1.08003 * 120.00208 * 179.97438 * 10 9 8
12 12 C 1.40225 * 119.99729 * 359.97438 * 10 9 8
13 13 N 1.30757 * 120.00307 * 359.97438 * 12 10 9
14 14 Si 1.86807 * 119.99992 * 179.97438 * 12 10 9
15 15 H 1.48497 * 109.47028 * 89.99443 * 14 12 10
16 16 H 1.48496 * 109.46948 * 209.99829 * 14 12 10
17 17 H 1.48498 * 109.46678 * 329.99648 * 14 12 10
18 18 N 1.36729 * 125.39275 * 359.71339 * 6 5 4
19 19 H 0.96999 * 126.61071 * 0.03994 * 18 6 5
20 20 C 1.39864 * 119.71869 * 359.97438 * 5 4 3
21 21 N 1.31952 * 119.82987 * 0.02562 * 20 5 4
22 22 H 1.09001 * 109.47229 * 89.99843 * 1 2 3
23 23 H 1.09000 * 109.47233 * 209.99449 * 1 2 3
24 24 H 1.08996 * 109.47185 * 330.00045 * 1 2 3
25 25 H 1.08002 * 119.91447 * 359.72502 * 3 2 1
26 26 H 1.08002 * 126.05985 * 179.97438 * 8 7 6
27 27 H 0.97001 * 119.99972 * 180.02562 * 13 12 10
28 28 H 1.07998 * 120.08522 * 179.97438 * 20 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1972 1.2023 0.0000
4 7 3.5158 1.2095 0.0051
5 6 4.1861 0.0571 0.0107
6 6 5.6606 0.0582 0.0158
7 7 6.4268 -1.0184 0.0211
8 6 7.7025 -0.6670 0.0241
9 6 7.7632 0.7326 0.0199
10 6 8.9148 1.5233 0.0216
11 1 8.8306 2.6001 0.0175
12 6 10.1801 0.9190 0.0287
13 7 10.2821 -0.3845 0.0342
14 14 11.7202 1.9764 0.0303
15 1 12.1229 2.2621 1.4308
16 1 12.8171 1.2542 -0.6628
17 1 11.4445 3.2533 -0.6758
18 7 6.4517 1.1733 0.0098
19 1 6.1513 2.0956 0.0020
20 6 3.4848 -1.1530 0.0118
21 7 2.1653 -1.1469 0.0067
22 1 -0.3634 0.0000 -1.0277
23 1 -0.3634 -0.8900 0.5137
24 1 -0.3633 0.8900 0.5138
25 1 1.6534 2.1355 -0.0045
26 1 8.5473 -1.3399 0.0289
27 1 11.1574 -0.8025 0.0395
28 1 4.0218 -2.0900 0.0159
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000074236213.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:50
Heat of formation + Delta-G solvation = 78.728094 kcal
Electronic energy + Delta-G solvation = -14692.275825 eV
Core-core repulsion = 12129.318617 eV
Total energy + Delta-G solvation = -2562.957208 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.086 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.55255 -39.66430 -34.24677 -33.80914 -32.45138 -31.11319 -29.25247 -27.51327
-24.72384 -23.94348 -22.35001 -20.19285 -19.55686 -18.08141 -17.01756 -15.94410
-15.52654 -15.25336 -14.67877 -14.35375 -13.43494 -13.06049 -12.96012 -12.49087
-12.40933 -12.24628 -12.08725 -11.45710 -11.27951 -11.06609 -11.00672 -10.64540
-10.49886 -9.74255 -8.90562 -8.69537 -8.59740 -8.50226 -7.03284 -6.98394
-4.50260 1.12623 1.63671 2.80444 2.93973 2.98151 3.41918 3.70523
4.10667 4.37227 4.60488 4.64161 4.76093 5.01517 5.13047 5.23075
5.55128 5.65252 5.76508 5.91552 6.03162 6.19853 6.69427 6.80283
6.95646 7.29430 7.39029 7.66784 7.86848 8.14900 8.33522 8.51753
8.66068 8.98872 9.59045 9.95293
Molecular weight = 230.09amu
Principal moments of inertia in cm(-1)
A = 0.077804 B = 0.005314 C = 0.004987
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 359.791924 B = 5268.329559 C = 5612.975939
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.087 4.087
2 C 0.011 3.989
3 C 0.070 3.930
4 N -0.473 5.473
5 C 0.201 3.799
6 C 0.076 3.924
7 N -0.439 5.439
8 C -0.096 4.096
9 C 0.207 3.793
10 C -0.430 4.430
11 H 0.080 0.920
12 C 0.074 3.926
13 N -0.782 5.782
14 Si 0.934 3.066
15 H -0.267 1.267
16 H -0.273 1.273
17 H -0.261 1.261
18 N -0.598 5.598
19 H 0.406 0.594
20 C 0.055 3.945
21 N -0.433 5.433
22 H 0.070 0.930
23 H 0.071 0.929
24 H 0.070 0.930
25 H 0.158 0.842
26 H 0.195 0.805
27 H 0.287 0.713
28 H 0.173 0.827
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.265 3.066 -0.030 7.886
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.129 4.129
3 C -0.093 4.093
4 N -0.189 5.189
5 C 0.065 3.935
6 C -0.165 4.165
7 N -0.159 5.159
8 C -0.255 4.255
9 C 0.090 3.910
10 C -0.465 4.465
11 H 0.099 0.901
12 C -0.146 4.146
13 N -0.408 5.408
14 Si 0.757 3.243
15 H -0.192 1.192
16 H -0.198 1.198
17 H -0.185 1.185
18 N -0.210 5.210
19 H 0.242 0.758
20 C -0.110 4.110
21 N -0.147 5.147
22 H 0.089 0.911
23 H 0.090 0.910
24 H 0.089 0.911
25 H 0.175 0.825
26 H 0.211 0.789
27 H 0.099 0.901
28 H 0.190 0.810
Dipole moment (debyes) X Y Z Total
from point charges -7.577 1.982 -0.033 7.832
hybrid contribution 0.906 1.804 -0.012 2.019
sum -6.672 3.786 -0.044 7.671
Atomic orbital electron populations
1.20479 0.88719 1.02893 1.02430 1.22005 0.97784 0.89993 1.03089
1.23304 0.90496 0.98540 0.96954 1.68379 1.08390 1.29116 1.13025
1.19386 0.90960 0.89612 0.93563 1.19304 0.88097 0.83329 1.25768
1.69452 1.04447 1.28409 1.13585 1.23739 0.92127 0.93025 1.16623
1.19315 0.82207 0.94635 0.94875 1.18583 0.88654 0.94383 1.44885
0.90137 1.25868 1.01057 0.95445 0.92269 1.69510 1.27060 1.10289
1.33949 0.85882 0.78957 0.80000 0.79414 1.19161 1.19770 1.18540
1.42914 1.06106 1.07900 1.64093 0.75811 1.23529 0.89280 0.99235
0.98928 1.68148 1.08831 1.29047 1.08662 0.91107 0.90958 0.91135
0.82488 0.78872 0.90120 0.80975
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.96 10.19 36.00 0.37 -0.59 15
2 C 0.01 0.17 6.79 -82.27 -0.56 -0.39 15
3 C 0.07 1.12 10.87 -17.39 -0.19 0.93 15
4 N -0.47 -9.38 10.44 -9.66 -0.10 -9.48 15
5 C 0.20 4.38 6.75 -82.86 -0.56 3.82 15
6 C 0.08 1.86 7.85 -154.00 -1.21 0.66 15
7 N -0.44 -11.38 10.75 -10.19 -0.11 -11.49 15
8 C -0.10 -2.55 10.86 -16.65 -0.18 -2.73 15
9 C 0.21 5.35 6.95 -83.68 -0.58 4.77 15
10 C -0.43 -10.54 9.44 -38.29 -0.36 -10.91 15
11 H 0.08 1.84 7.85 -52.48 -0.41 1.43 15
12 C 0.07 1.71 5.50 -17.26 -0.09 1.61 15
13 N -0.78 -18.56 10.32 55.56 0.57 -17.98 15
14 Si 0.93 17.14 29.56 -169.99 -5.03 12.12 15
15 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15
16 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15
17 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15
18 N -0.60 -14.38 6.27 -8.23 -0.05 -14.43 15
19 H 0.41 8.79 8.96 -40.82 -0.37 8.42 15
20 C 0.05 1.10 10.87 -16.89 -0.18 0.92 15
21 N -0.43 -7.98 10.41 -8.87 -0.09 -8.07 15
22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15
23 H 0.07 0.79 8.14 -51.93 -0.42 0.36 15
24 H 0.07 0.60 8.08 -51.93 -0.42 0.18 15
25 H 0.16 1.89 8.06 -52.49 -0.42 1.47 15
26 H 0.19 5.20 5.75 -52.49 -0.30 4.89 15
27 H 0.29 6.10 8.29 -40.82 -0.34 5.76 15
28 H 0.17 3.39 7.82 -52.49 -0.41 2.98 15
LS Contribution 256.23 15.07 3.86 3.86
Total: -1.00 -28.11 256.23 -6.81 -34.92
By element:
Atomic # 1 Polarization: 14.79 SS G_CDS: -2.31 Total: 12.48 kcal
Atomic # 6 Polarization: 1.64 SS G_CDS: -3.55 Total: -1.91 kcal
Atomic # 7 Polarization: -61.69 SS G_CDS: 0.22 Total: -61.47 kcal
Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.12 kcal
Total LS contribution 3.86 Total: 3.86 kcal
Total: -28.11 -6.81 -34.92 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000074236213.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.644 kcal
(2) G-P(sol) polarization free energy of solvation -28.107 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.536 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.916 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.728 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds