Wall clock time and date at job start Mon Mar 30 2020 03:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38635 * 119.85719 * 2 1 4 4 N 1.31868 * 120.16820 * 179.74583 * 3 2 1 5 5 C 1.33321 * 119.87426 * 359.97438 * 4 3 2 6 6 C 1.47444 * 120.14329 * 179.97438 * 5 4 3 7 7 N 1.32146 * 125.39965 * 180.02562 * 6 5 4 8 8 C 1.32318 * 110.03849 * 179.97438 * 7 6 5 9 9 C 1.40094 * 107.88564 * 359.97438 * 8 7 6 10 10 C 1.39692 * 126.95676 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00208 * 179.97438 * 10 9 8 12 12 C 1.40225 * 119.99729 * 359.97438 * 10 9 8 13 13 N 1.30757 * 120.00307 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99992 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47028 * 89.99443 * 14 12 10 16 16 H 1.48496 * 109.46948 * 209.99829 * 14 12 10 17 17 H 1.48498 * 109.46678 * 329.99648 * 14 12 10 18 18 N 1.36729 * 125.39275 * 359.71339 * 6 5 4 19 19 H 0.96999 * 126.61071 * 0.03994 * 18 6 5 20 20 C 1.39864 * 119.71869 * 359.97438 * 5 4 3 21 21 N 1.31952 * 119.82987 * 0.02562 * 20 5 4 22 22 H 1.09001 * 109.47229 * 89.99843 * 1 2 3 23 23 H 1.09000 * 109.47233 * 209.99449 * 1 2 3 24 24 H 1.08996 * 109.47185 * 330.00045 * 1 2 3 25 25 H 1.08002 * 119.91447 * 359.72502 * 3 2 1 26 26 H 1.08002 * 126.05985 * 179.97438 * 8 7 6 27 27 H 0.97001 * 119.99972 * 180.02562 * 13 12 10 28 28 H 1.07998 * 120.08522 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.2023 0.0000 4 7 3.5158 1.2095 0.0051 5 6 4.1861 0.0571 0.0107 6 6 5.6606 0.0582 0.0158 7 7 6.4268 -1.0184 0.0211 8 6 7.7025 -0.6670 0.0241 9 6 7.7632 0.7326 0.0199 10 6 8.9148 1.5233 0.0216 11 1 8.8306 2.6001 0.0175 12 6 10.1801 0.9190 0.0287 13 7 10.2821 -0.3845 0.0342 14 14 11.7202 1.9764 0.0303 15 1 12.1229 2.2621 1.4308 16 1 12.8171 1.2542 -0.6628 17 1 11.4445 3.2533 -0.6758 18 7 6.4517 1.1733 0.0098 19 1 6.1513 2.0956 0.0020 20 6 3.4848 -1.1530 0.0118 21 7 2.1653 -1.1469 0.0067 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5137 24 1 -0.3633 0.8900 0.5138 25 1 1.6534 2.1355 -0.0045 26 1 8.5473 -1.3399 0.0289 27 1 11.1574 -0.8025 0.0395 28 1 4.0218 -2.0900 0.0159 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074236213.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:49 Heat of formation + Delta-G solvation = 59.259263 kcal Electronic energy + Delta-G solvation = -14693.120056 eV Core-core repulsion = 12129.318617 eV Total energy + Delta-G solvation = -2563.801440 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.18277 -41.38608 -35.90273 -35.38658 -33.86103 -32.98418 -30.87588 -29.03848 -26.35094 -25.44854 -23.85108 -22.04250 -21.37788 -19.85322 -18.56874 -17.66604 -17.08549 -16.67125 -16.15175 -15.88454 -15.12700 -14.69396 -14.59404 -14.11290 -13.63052 -13.55242 -13.15068 -12.96778 -12.94363 -12.80975 -12.56383 -12.10462 -11.98293 -11.39681 -10.62926 -10.54181 -10.28078 -10.05398 -8.87078 -8.68792 -6.38120 -0.36278 0.15538 1.27259 1.43054 1.58822 1.78541 2.17120 2.44248 2.66703 3.03127 3.04609 3.25462 3.27688 3.60008 3.95748 4.19026 4.36803 4.61914 4.85056 4.88356 4.93896 4.99937 5.17970 5.47459 5.48345 5.55939 5.83435 6.32674 6.33898 6.65894 6.76755 6.85670 7.18829 7.69228 8.28017 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.077804 B = 0.005314 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.791924 B = 5268.329559 C = 5612.975939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.040 3.960 3 C 0.070 3.930 4 N -0.477 5.477 5 C 0.167 3.833 6 C 0.082 3.918 7 N -0.462 5.462 8 C -0.145 4.145 9 C 0.183 3.817 10 C -0.460 4.460 11 H 0.089 0.911 12 C 0.032 3.968 13 N -0.814 5.814 14 Si 1.011 2.989 15 H -0.261 1.261 16 H -0.265 1.265 17 H -0.256 1.256 18 N -0.594 5.594 19 H 0.414 0.586 20 C 0.051 3.949 21 N -0.446 5.446 22 H 0.093 0.907 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.210 0.790 26 H 0.182 0.818 27 H 0.295 0.705 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 4.910 -0.061 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.093 4.093 4 N -0.194 5.194 5 C 0.031 3.969 6 C -0.163 4.163 7 N -0.183 5.183 8 C -0.300 4.300 9 C 0.067 3.933 10 C -0.495 4.495 11 H 0.107 0.893 12 C -0.185 4.185 13 N -0.440 5.440 14 Si 0.830 3.170 15 H -0.186 1.186 16 H -0.189 1.189 17 H -0.180 1.180 18 N -0.207 5.207 19 H 0.252 0.748 20 C -0.110 4.110 21 N -0.161 5.161 22 H 0.111 0.889 23 H 0.094 0.906 24 H 0.125 0.875 25 H 0.226 0.774 26 H 0.198 0.802 27 H 0.107 0.893 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.132 3.784 -0.063 10.816 hybrid contribution 1.123 1.244 -0.006 1.676 sum -9.009 5.028 -0.069 10.318 Atomic orbital electron populations 1.20731 0.84399 1.04993 1.04426 1.23069 1.00423 0.89053 0.97657 1.24220 0.89151 1.00886 0.95076 1.68348 1.10442 1.28438 1.12131 1.19242 0.89801 0.90966 0.96841 1.19910 0.89540 0.83092 1.23774 1.69367 1.04448 1.29324 1.15127 1.23561 0.92254 0.93685 1.20490 1.19563 0.83171 0.94623 0.95980 1.18924 0.89213 0.94813 1.46566 0.89258 1.26899 1.03790 0.96649 0.91141 1.69585 1.28292 1.11949 1.34130 0.84755 0.74552 0.78084 0.79566 1.18560 1.18902 1.18001 1.42896 1.05667 1.08281 1.63895 0.74836 1.23421 0.90180 0.98553 0.98833 1.68292 1.07738 1.30543 1.09532 0.88859 0.90563 0.87453 0.77376 0.80186 0.89310 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 10.19 71.24 0.73 -0.67 15 2 C 0.04 1.09 6.79 42.59 0.29 1.37 15 3 C 0.07 1.94 10.87 84.78 0.92 2.87 15 4 N -0.48 -17.92 10.44 -184.48 -1.93 -19.85 15 5 C 0.17 7.26 6.75 41.74 0.28 7.54 15 6 C 0.08 4.19 7.85 136.11 1.07 5.26 15 7 N -0.46 -25.41 10.75 -186.14 -2.00 -27.41 15 8 C -0.14 -8.26 10.86 85.07 0.92 -7.34 15 9 C 0.18 9.99 6.95 38.91 0.27 10.26 15 10 C -0.46 -23.51 9.44 23.10 0.22 -23.29 15 11 H 0.09 4.21 7.85 -2.91 -0.02 4.18 15 12 C 0.03 1.53 5.50 85.34 0.47 2.00 15 13 N -0.81 -40.49 10.32 21.88 0.23 -40.26 15 14 Si 1.01 35.37 29.56 68.60 2.03 37.39 15 15 H -0.26 -8.83 7.11 99.48 0.71 -8.12 15 16 H -0.26 -8.80 7.11 99.48 0.71 -8.10 15 17 H -0.26 -8.66 7.11 99.48 0.71 -7.96 15 18 N -0.59 -29.65 6.27 -179.97 -1.13 -30.78 15 19 H 0.41 18.36 8.96 -92.71 -0.83 17.53 15 20 C 0.05 2.05 10.87 85.07 0.92 2.97 15 21 N -0.45 -15.41 10.41 -181.98 -1.89 -17.30 15 22 H 0.09 1.22 8.14 -2.39 -0.02 1.20 15 23 H 0.08 1.25 8.14 -2.39 -0.02 1.23 15 24 H 0.11 1.03 8.08 -2.39 -0.02 1.01 15 25 H 0.21 3.60 8.06 -2.91 -0.02 3.58 15 26 H 0.18 10.54 5.75 -2.91 -0.02 10.52 15 27 H 0.30 13.06 8.29 -92.71 -0.77 12.29 15 28 H 0.17 6.71 7.82 -2.91 -0.02 6.69 15 Total: -1.00 -64.94 256.23 1.77 -63.17 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.38 Total: 34.06 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 6.09 Total: 0.98 kcal Atomic # 7 Polarization: -128.88 SS G_CDS: -6.72 Total: -135.61 kcal Atomic # 14 Polarization: 35.37 SS G_CDS: 2.03 Total: 37.39 kcal Total: -64.94 1.77 -63.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074236213.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.427 kcal (2) G-P(sol) polarization free energy of solvation -64.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds