Wall clock time and date at job start Mon Mar 30 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39024 * 126.69641 * 2 1 4 4 C 1.39710 * 125.54058 * 359.97438 * 3 2 1 5 5 H 1.08003 * 119.99834 * 354.05145 * 4 3 2 6 6 C 1.40268 * 120.00677 * 174.05325 * 4 3 2 7 7 N 1.30711 * 119.99754 * 6.02179 * 6 4 3 8 8 Si 1.86801 * 120.00341 * 186.02371 * 6 4 3 9 9 H 1.48500 * 109.46964 * 94.98544 * 8 6 4 10 10 H 1.48500 * 109.47138 * 214.98087 * 8 6 4 11 11 H 1.48491 * 109.47294 * 334.98435 * 8 6 4 12 12 O 1.35143 * 108.92613 * 180.02562 * 3 2 1 13 13 C 1.35038 * 109.92872 * 359.97438 * 12 3 2 14 14 C 1.41074 * 107.95317 * 359.73859 * 13 12 3 15 15 C 1.40233 * 119.87053 * 179.62493 * 14 13 12 16 16 C 1.36588 * 119.73381 * 0.61596 * 15 14 13 17 17 C 1.50704 * 119.75893 * 179.68633 * 16 15 14 18 18 C 1.38814 * 120.47629 * 359.67065 * 16 15 14 19 19 C 1.38108 * 120.73505 * 0.02562 * 18 16 15 20 20 C 1.50700 * 120.03496 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.47333 * 90.02127 * 1 2 3 22 22 H 1.09000 * 109.47237 * 210.02428 * 1 2 3 23 23 H 1.09001 * 109.47087 * 330.02281 * 1 2 3 24 24 H 0.96994 * 120.00382 * 180.02562 * 7 6 4 25 25 H 1.08001 * 120.13634 * 180.28254 * 15 14 13 26 26 H 1.08996 * 109.47273 * 269.97898 * 17 16 15 27 27 H 1.08997 * 109.47289 * 29.98789 * 17 16 15 28 28 H 1.09001 * 109.46858 * 149.98006 * 17 16 15 29 29 H 1.08001 * 119.62865 * 180.02562 * 18 16 15 30 30 H 1.08995 * 109.47299 * 270.02412 * 20 19 18 31 31 H 1.09008 * 109.46880 * 30.02348 * 20 19 18 32 32 H 1.08998 * 109.47525 * 150.02363 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3378 1.1147 0.0000 4 6 1.9116 2.4452 -0.0005 5 1 0.8609 2.6756 -0.0979 6 6 2.8481 3.4819 0.1254 7 7 4.1268 3.2110 0.1248 8 14 2.2678 5.2495 0.2940 9 1 2.2004 5.6132 1.7322 10 1 3.2211 6.1517 -0.4005 11 1 0.9209 5.3886 -0.3155 12 8 3.6247 0.7023 -0.0006 13 6 3.6756 -0.6472 -0.0004 14 6 2.3509 -1.1322 0.0065 15 6 2.1132 -2.5143 0.0002 16 6 3.1672 -3.3830 0.0002 17 6 2.9123 -4.8683 0.0006 18 6 4.4714 -2.9076 -0.0005 19 6 4.7279 -1.5505 -0.0007 20 6 6.1500 -1.0517 -0.0008 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5135 24 1 4.7744 3.9277 0.2122 25 1 1.1007 -2.8903 0.0008 26 1 2.8515 -5.2262 1.0283 27 1 1.9736 -5.0760 -0.5128 28 1 3.7278 -5.3770 -0.5136 29 1 5.2945 -3.6067 -0.0009 30 1 6.4931 -0.9318 1.0267 31 1 6.7873 -1.7712 -0.5151 32 1 6.1983 -0.0915 -0.5144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077070800.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:20 Heat of formation + Delta-G solvation = -30.921513 kcal Electronic energy + Delta-G solvation = -15601.690990 eV Core-core repulsion = 13105.226611 eV Total energy + Delta-G solvation = -2496.464380 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.58456 -38.84299 -35.80159 -34.77118 -33.58757 -31.49686 -29.30233 -27.84698 -27.10560 -26.31310 -22.80818 -21.81211 -20.00946 -19.58233 -17.61055 -17.09223 -16.48367 -16.26451 -15.75379 -14.81816 -14.44444 -14.31513 -14.03211 -13.98613 -13.67045 -13.50003 -13.35438 -13.30649 -13.06101 -12.66371 -12.56552 -12.41733 -12.13621 -11.99204 -11.76541 -11.37682 -11.32226 -10.23591 -9.11559 -8.90631 -8.71181 -6.50816 0.40536 0.83661 1.31054 1.35142 1.53661 1.92130 2.11016 2.70375 3.00592 3.15909 4.01170 4.11406 4.33366 4.48744 4.54938 4.68561 4.73998 4.76757 4.81493 4.93793 4.94693 4.98133 5.05366 5.06539 5.10009 5.30424 5.42559 5.47172 5.52962 5.83638 5.85634 5.98841 6.06358 6.27304 6.53075 6.61204 7.09402 8.10197 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.035957 B = 0.008156 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.513327 B = 3432.156915 C = 4181.825337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 C -0.423 4.423 3 C 0.204 3.796 4 C -0.453 4.453 5 H 0.121 0.879 6 C 0.021 3.979 7 N -0.800 5.800 8 Si 1.009 2.991 9 H -0.258 1.258 10 H -0.263 1.263 11 H -0.246 1.246 12 O -0.194 6.194 13 C -0.073 4.073 14 C -0.064 4.064 15 C -0.162 4.162 16 C -0.088 4.088 17 C -0.097 4.097 18 C -0.170 4.170 19 C -0.070 4.070 20 C -0.098 4.098 21 H 0.037 0.963 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.298 0.702 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -5.193 0.282 5.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.426 4.426 3 C 0.154 3.846 4 C -0.480 4.480 5 H 0.139 0.861 6 C -0.199 4.199 7 N -0.424 5.424 8 Si 0.827 3.173 9 H -0.182 1.182 10 H -0.187 1.187 11 H -0.169 1.169 12 O -0.096 6.096 13 C -0.120 4.120 14 C -0.065 4.065 15 C -0.180 4.180 16 C -0.088 4.088 17 C -0.154 4.154 18 C -0.188 4.188 19 C -0.071 4.071 20 C -0.155 4.155 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.136 0.864 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.167 0.833 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.521 -4.984 0.281 5.019 hybrid contribution -0.139 0.907 0.066 0.920 sum 0.383 -4.077 0.347 4.110 Atomic orbital electron populations 1.19459 0.89118 1.00206 0.99293 1.20169 0.96661 0.90380 1.35349 1.20011 0.79222 0.94835 0.90558 1.19424 0.96890 0.87275 1.44410 0.86121 1.27390 0.94054 1.07609 0.90820 1.69820 1.03508 1.38179 1.30869 0.84780 0.79934 0.72756 0.79878 1.18198 1.18681 1.16863 1.84519 1.28815 1.18764 1.77512 1.20208 0.96375 0.82973 1.12408 1.19026 0.92935 0.94935 0.99629 1.20188 0.99073 0.90090 1.08665 1.19718 0.92411 0.97171 0.99486 1.20709 1.02853 0.89021 1.02793 1.20633 0.97040 0.92335 1.08795 1.19106 0.93486 0.92004 1.02464 1.20620 0.91759 1.00859 1.02219 0.94383 0.93185 0.93245 0.89069 0.86410 0.90527 0.91332 0.90136 0.83269 0.91255 0.88838 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -1.06 10.13 71.24 0.72 -0.34 16 2 C -0.42 -22.83 6.30 -18.94 -0.12 -22.95 16 3 C 0.20 11.88 6.74 22.81 0.15 12.04 16 4 C -0.45 -24.29 9.00 23.12 0.21 -24.08 16 5 H 0.12 5.94 7.29 -2.91 -0.02 5.92 16 6 C 0.02 1.03 5.49 85.35 0.47 1.50 16 7 N -0.80 -42.35 11.98 21.89 0.26 -42.09 16 8 Si 1.01 36.08 29.57 68.60 2.03 38.10 16 9 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 10 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 11 H -0.25 -8.28 7.11 99.48 0.71 -7.58 16 12 O -0.19 -11.68 8.92 -18.34 -0.16 -11.85 16 13 C -0.07 -3.99 7.03 23.07 0.16 -3.83 16 14 C -0.06 -3.38 6.13 -21.37 -0.13 -3.51 16 15 C -0.16 -7.07 9.70 22.37 0.22 -6.85 16 16 C -0.09 -3.25 5.84 -20.11 -0.12 -3.37 16 17 C -0.10 -2.49 9.99 71.24 0.71 -1.77 16 18 C -0.17 -6.39 9.33 22.38 0.21 -6.19 16 19 C -0.07 -3.14 5.89 -19.79 -0.12 -3.25 16 20 C -0.10 -3.69 10.02 71.24 0.71 -2.98 16 21 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.05 2.07 7.55 -2.39 -0.02 2.06 16 24 H 0.30 13.96 8.29 -92.71 -0.77 13.19 16 25 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 28 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 29 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.09 2.75 8.09 -2.38 -0.02 2.73 16 32 H 0.04 1.74 8.09 -2.39 -0.02 1.72 16 Total: -1.00 -66.14 277.55 6.32 -59.82 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 1.11 Total: 21.60 kcal Atomic # 6 Polarization: -68.66 SS G_CDS: 3.08 Total: -65.58 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.26 Total: -42.09 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.16 Total: -11.85 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.10 kcal Total: -66.14 6.32 -59.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077070800.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.895 kcal (2) G-P(sol) polarization free energy of solvation -66.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds