Wall clock time and date at job start Mon Mar 30 2020 03:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46760 * 2 1 4 4 C 1.52998 * 109.47252 * 240.00319 * 2 1 3 5 5 S 1.81400 * 109.47343 * 119.99868 * 2 1 3 6 6 O 1.42093 * 109.47031 * 176.39074 * 5 2 1 7 7 C 1.81394 * 102.99959 * 59.99967 * 5 2 1 8 8 C 1.52998 * 109.47510 * 185.48285 * 7 5 2 9 9 C 1.50708 * 115.54638 * 319.93948 * 8 7 5 10 10 H 1.08002 * 119.99941 * 99.32761 * 9 8 7 11 11 C 1.37876 * 119.99769 * 279.32152 * 9 8 7 12 12 N 1.31513 * 120.00140 * 355.02973 * 11 9 8 13 13 Si 1.86800 * 119.99695 * 175.02516 * 11 9 8 14 14 H 1.48504 * 109.47056 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47090 * 120.00199 * 13 11 9 16 16 H 1.48494 * 109.47372 * 240.00198 * 13 11 9 17 17 C 1.52999 * 117.50546 * 174.26715 * 8 7 5 18 18 C 1.52995 * 60.03215 * 252.50184 * 17 8 7 19 19 H 1.08997 * 109.47046 * 299.99689 * 1 2 3 20 20 H 1.08998 * 109.47125 * 59.99919 * 1 2 3 21 21 H 1.09001 * 109.46563 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47555 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.47367 * 299.99932 * 3 2 1 24 24 H 1.09002 * 109.47441 * 60.00004 * 3 2 1 25 25 H 1.09010 * 109.46670 * 299.99825 * 4 2 1 26 26 H 1.09001 * 109.47120 * 59.99083 * 4 2 1 27 27 H 1.08997 * 109.47055 * 179.97438 * 4 2 1 28 28 H 1.09008 * 109.47263 * 65.48472 * 7 5 2 29 29 H 1.09002 * 109.47761 * 305.48582 * 7 5 2 30 30 H 0.97000 * 119.99498 * 184.99349 * 12 11 9 31 31 H 1.09003 * 117.49402 * 0.02562 * 17 8 7 32 32 H 1.08998 * 117.50039 * 144.99918 * 17 8 7 33 33 H 1.09004 * 117.50476 * 107.49997 * 18 17 8 34 34 H 1.09007 * 117.49589 * 252.52145 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 16 2.1348 -0.8551 1.4811 6 8 3.5532 -0.9285 1.4397 7 6 1.4376 -2.5203 1.3041 8 6 1.7477 -3.3391 2.5588 9 6 3.1255 -3.1448 3.1377 10 1 3.2685 -2.4870 3.9823 11 6 4.2034 -3.8067 2.5890 12 7 4.0166 -4.6815 1.6250 13 14 5.9291 -3.4607 3.2150 14 1 5.8691 -2.4437 4.2954 15 1 6.5229 -4.7135 3.7474 16 1 6.7670 -2.9505 2.1003 17 6 1.1279 -4.7341 2.6633 18 6 0.5991 -3.5954 3.5377 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 3.1299 1.4426 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6767 -1.7489 -1.2492 26 1 1.6766 -0.2074 -2.1392 27 1 3.1300 -0.7207 -1.2494 28 1 1.8777 -3.0079 0.4342 29 1 0.3577 -2.4503 1.1737 30 1 4.7645 -5.1997 1.2888 31 1 0.4996 -5.0686 1.8378 32 1 1.7167 -5.5112 3.1507 33 1 -0.3775 -3.1807 3.2878 34 1 0.8404 -3.6232 4.6004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862564.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:52 Heat of formation + Delta-G solvation = -49.057942 kcal Electronic energy + Delta-G solvation = -15059.087603 eV Core-core repulsion = 12697.280720 eV Total energy + Delta-G solvation = -2361.806883 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.30005 -36.98098 -36.26349 -33.97324 -29.68339 -28.20372 -27.89731 -27.17076 -22.80373 -21.77159 -20.91710 -18.32055 -17.45667 -16.67876 -16.61648 -15.85975 -15.25467 -15.06372 -14.72372 -14.67229 -14.43924 -13.65132 -13.30334 -13.15602 -13.01536 -12.92867 -12.82285 -12.59845 -12.40884 -12.29243 -11.86780 -11.83363 -11.78140 -11.37175 -10.94891 -10.66470 -10.24984 -9.73478 -8.71348 -8.14299 -6.22820 1.02023 1.26267 1.35944 1.40773 2.22238 2.40494 3.21617 3.36847 3.57061 3.89963 3.96697 4.30304 4.40413 4.55276 4.61956 4.69767 4.79575 4.84425 4.89109 4.92844 5.02857 5.08087 5.12781 5.15635 5.21589 5.32139 5.37851 5.53631 5.63959 5.75998 5.84226 6.35880 6.85075 7.50285 8.93409 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026811 B = 0.011626 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.112844 B = 2407.885869 C = 2981.636188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.402 4.402 3 C -0.121 4.121 4 C -0.138 4.138 5 S 1.293 4.707 6 O -0.895 6.895 7 C -0.378 4.378 8 C 0.023 3.977 9 C -0.501 4.501 10 H 0.057 0.943 11 C 0.043 3.957 12 N -0.909 5.909 13 Si 0.928 3.072 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.304 1.304 17 C -0.171 4.171 18 C -0.167 4.167 19 H 0.099 0.901 20 H 0.070 0.930 21 H 0.060 0.940 22 H 0.027 0.973 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.018 0.982 28 H 0.042 0.958 29 H 0.126 0.874 30 H 0.252 0.748 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 10.678 -1.029 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.500 4.500 3 C -0.179 4.179 4 C -0.196 4.196 5 S 1.493 4.507 6 O -0.891 6.891 7 C -0.516 4.516 8 C 0.022 3.978 9 C -0.540 4.540 10 H 0.076 0.924 11 C -0.157 4.157 12 N -0.548 5.548 13 Si 0.756 3.244 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.231 1.231 17 C -0.209 4.209 18 C -0.204 4.204 19 H 0.117 0.883 20 H 0.089 0.911 21 H 0.079 0.921 22 H 0.046 0.954 23 H 0.096 0.904 24 H 0.111 0.889 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.144 0.856 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.121 10.990 -0.478 15.642 hybrid contribution 2.487 -1.617 -2.050 3.606 sum -8.634 9.373 -2.528 12.992 Atomic orbital electron populations 1.21607 0.88230 1.03119 1.04666 1.27406 1.05460 1.04943 1.12193 1.21526 0.99348 0.92478 1.04531 1.21855 0.98918 0.99901 0.98950 1.68982 0.90463 0.91082 1.00177 1.93000 1.29302 1.84847 1.81938 1.27027 1.07403 1.15540 1.01678 1.18415 0.91562 0.95062 0.92809 1.20777 0.91444 1.26915 1.14844 0.92450 1.25392 1.01323 0.94575 0.94424 1.70085 1.31388 1.24984 1.28361 0.85956 0.82492 0.77910 0.78011 1.18610 1.20276 1.23109 1.22425 1.03502 0.93144 1.01877 1.23180 0.98095 1.02668 0.96474 0.88267 0.91083 0.92109 0.95421 0.90403 0.88910 0.93614 0.90537 0.96226 0.93941 0.85632 0.93917 0.91120 0.93168 0.86627 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.31 71.98 0.60 -1.60 16 2 C -0.40 -11.17 0.94 -10.79 -0.01 -11.18 16 3 C -0.12 -2.92 8.48 71.98 0.61 -2.31 16 4 C -0.14 -4.55 8.30 71.98 0.60 -3.96 16 5 S 1.29 47.83 11.46 -56.49 -0.65 47.18 16 6 O -0.90 -47.26 16.70 -148.98 -2.49 -49.74 16 7 C -0.38 -15.47 5.14 71.98 0.37 -15.10 16 8 C 0.02 1.07 1.66 -52.90 -0.09 0.98 16 9 C -0.50 -27.89 6.58 25.60 0.17 -27.72 16 10 H 0.06 3.17 7.82 -2.91 -0.02 3.15 16 11 C 0.04 2.58 5.36 84.65 0.45 3.03 16 12 N -0.91 -56.44 12.85 21.45 0.28 -56.16 16 13 Si 0.93 49.48 29.54 68.60 2.03 51.51 16 14 H -0.26 -13.41 7.11 99.48 0.71 -12.70 16 15 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 16 H -0.30 -17.04 7.11 99.48 0.71 -16.33 16 17 C -0.17 -7.81 9.42 30.59 0.29 -7.52 16 18 C -0.17 -6.26 9.89 30.62 0.30 -5.96 16 19 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 20 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.06 1.14 6.55 -2.39 -0.02 1.13 16 22 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 1.58 6.83 -2.38 -0.02 1.56 16 26 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.04 2.07 7.28 -2.39 -0.02 2.06 16 29 H 0.13 3.85 6.53 -2.39 -0.02 3.84 16 30 H 0.25 15.23 8.32 -92.71 -0.77 14.46 16 31 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.12 3.27 8.09 -2.39 -0.02 3.25 16 34 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 Total: -1.00 -77.23 288.78 3.51 -73.72 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.05 Total: 4.83 kcal Atomic # 6 Polarization: -74.63 SS G_CDS: 3.29 Total: -71.34 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.28 Total: -56.16 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -2.49 Total: -49.74 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.03 Total: 51.51 kcal Atomic # 16 Polarization: 47.83 SS G_CDS: -0.65 Total: 47.18 kcal Total: -77.23 3.51 -73.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862564.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.661 kcal (2) G-P(sol) polarization free energy of solvation -77.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds