Wall clock time and date at job start Mon Mar 30 2020 03:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47080 * 2 1 4 4 C 1.53006 * 109.47375 * 119.99843 * 2 1 3 5 5 S 1.81394 * 109.47140 * 174.99973 * 4 2 1 6 6 O 1.42100 * 109.47152 * 63.61470 * 5 4 2 7 7 C 1.81402 * 102.99875 * 180.02562 * 5 4 2 8 8 C 1.53008 * 109.47108 * 174.53885 * 7 5 4 9 9 C 1.50697 * 115.56072 * 40.36396 * 8 7 5 10 10 H 1.08008 * 120.00063 * 266.85868 * 9 8 7 11 11 C 1.37872 * 120.00134 * 86.86146 * 9 8 7 12 12 N 1.31516 * 119.99934 * 353.99681 * 11 9 8 13 13 Si 1.86803 * 120.00117 * 173.99803 * 11 9 8 14 14 H 1.48497 * 109.47228 * 90.00360 * 13 11 9 15 15 H 1.48500 * 109.46809 * 210.00154 * 13 11 9 16 16 H 1.48500 * 109.47071 * 329.99589 * 13 11 9 17 17 C 1.52993 * 117.49856 * 186.05780 * 8 7 5 18 18 C 1.52996 * 60.03387 * 107.47171 * 17 8 7 19 19 H 1.09004 * 109.47288 * 299.99784 * 1 2 3 20 20 H 1.08996 * 109.47313 * 60.00387 * 1 2 3 21 21 H 1.09003 * 109.47094 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47215 * 239.99918 * 2 1 3 23 23 H 1.08996 * 109.47163 * 59.99886 * 3 2 1 24 24 H 1.09002 * 109.47101 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47043 * 300.00263 * 3 2 1 26 26 H 1.08998 * 109.46906 * 55.00282 * 4 2 1 27 27 H 1.09001 * 109.47274 * 295.00106 * 4 2 1 28 28 H 1.08997 * 109.47094 * 54.53519 * 7 5 4 29 29 H 1.09001 * 109.46843 * 294.52986 * 7 5 4 30 30 H 0.97001 * 119.99871 * 185.02338 * 12 11 9 31 31 H 1.09004 * 117.49944 * 214.97963 * 17 8 7 32 32 H 1.09000 * 117.49859 * 359.96614 * 17 8 7 33 33 H 1.09004 * 117.49524 * 107.50067 * 18 17 8 34 34 H 1.09000 * 117.50134 * 252.51740 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 3.8478 -0.8514 1.1766 6 8 4.4178 0.4501 1.2011 7 6 4.2566 -1.7202 2.7156 8 6 5.7544 -2.0319 2.7430 9 6 6.6551 -0.9409 2.2241 10 1 6.9597 -0.9393 1.1878 11 6 7.0905 0.0553 3.0720 12 7 6.6274 0.1215 4.3012 13 14 8.3381 1.3109 2.4751 14 1 7.6272 2.4709 1.8800 15 1 9.1641 1.7709 3.6202 16 1 9.2150 0.6889 1.4507 17 6 6.2764 -2.8897 3.8973 18 6 6.1794 -3.4804 2.4893 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.6766 1.9563 0.8899 24 1 3.1300 1.4425 -0.0005 25 1 1.6765 1.9563 -0.8900 26 1 1.6055 -1.7198 1.2952 27 1 1.7517 -0.1583 2.1370 28 1 3.6909 -2.6503 2.7690 29 1 4.0011 -1.0900 3.5675 30 1 6.8772 0.8632 4.8742 31 1 7.2714 -2.6649 4.2814 32 1 5.5530 -3.2316 4.6375 33 1 7.1107 -3.6442 1.9470 34 1 5.3920 -4.2107 2.3030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862573.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:55 Heat of formation + Delta-G solvation = -28.637440 kcal Electronic energy + Delta-G solvation = -14677.718084 eV Core-core repulsion = 12316.796700 eV Total energy + Delta-G solvation = -2360.921383 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -36.50182 -35.86290 -34.41003 -31.83040 -27.83491 -27.04374 -26.69241 -25.15850 -21.07726 -20.16471 -19.04716 -16.65453 -15.87187 -15.25958 -14.58939 -14.43682 -14.13577 -13.62748 -13.15863 -12.78783 -12.67202 -12.26284 -12.06598 -11.79019 -11.49041 -11.10707 -10.87248 -10.82430 -10.75361 -10.56155 -10.46971 -10.40903 -10.12327 -9.58840 -9.05044 -8.69761 -8.32807 -8.01042 -7.11053 -5.95722 -4.03567 2.51826 3.40636 3.46991 3.49944 3.77283 4.53606 4.83367 5.03057 5.18733 5.33231 5.33960 5.38329 5.73572 5.83614 5.87976 6.04960 6.08155 6.08695 6.19357 6.25916 6.35335 6.52077 6.55231 6.56288 6.76640 6.78011 6.90086 7.14107 7.45887 7.54692 7.96100 8.40317 8.97053 9.67617 11.12827 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027860 B = 0.009648 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.795480 B = 2901.504349 C = 3589.482015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.068 4.068 3 C -0.174 4.174 4 C -0.475 4.475 5 S 1.254 4.746 6 O -0.814 6.814 7 C -0.387 4.387 8 C 0.062 3.938 9 C -0.507 4.507 10 H 0.064 0.936 11 C 0.090 3.910 12 N -0.879 5.879 13 Si 0.889 3.111 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.273 1.273 17 C -0.154 4.154 18 C -0.210 4.210 19 H 0.049 0.951 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.090 0.910 25 H 0.048 0.952 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.258 0.742 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.003 -4.784 -7.608 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C -0.231 4.231 4 C -0.609 4.609 5 S 1.452 4.548 6 O -0.809 6.809 7 C -0.526 4.526 8 C 0.060 3.940 9 C -0.545 4.545 10 H 0.082 0.918 11 C -0.115 4.115 12 N -0.515 5.515 13 Si 0.717 3.283 14 H -0.202 1.202 15 H -0.216 1.216 16 H -0.197 1.197 17 C -0.193 4.193 18 C -0.247 4.247 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.093 0.907 23 H 0.066 0.934 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.381 -4.347 -8.116 12.450 hybrid contribution -0.228 1.856 1.984 2.726 sum -8.609 -2.491 -6.132 10.859 Atomic orbital electron populations 1.21867 0.95753 1.01272 1.01166 1.20606 0.95404 0.96167 0.96547 1.22249 1.04619 0.95449 1.00806 1.28127 1.26086 1.04826 1.01822 1.70206 0.81569 0.99623 1.03447 1.93104 1.68014 1.38154 1.81659 1.27087 1.03233 1.06668 1.15608 1.18255 0.88497 0.88403 0.98822 1.20368 1.29658 1.08487 0.95940 0.91802 1.24836 0.95465 0.96880 0.94273 1.69983 1.44027 1.30358 1.07103 0.86632 0.81206 0.82327 0.78181 1.20246 1.21577 1.19746 1.22490 1.01521 1.05251 0.89993 1.23134 1.01834 0.98471 1.01295 0.93213 0.93046 0.92826 0.90659 0.93359 0.89121 0.93280 0.88053 0.90830 0.90362 0.90074 0.93228 0.90094 0.92132 0.90174 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 37.15 0.34 -1.31 16 2 C -0.07 -0.93 2.92 -90.62 -0.26 -1.20 16 3 C -0.17 -2.76 8.85 37.16 0.33 -2.43 16 4 C -0.48 -7.14 5.37 37.16 0.20 -6.94 16 5 S 1.25 23.08 12.35 -107.50 -1.33 21.75 16 6 O -0.81 -20.11 14.14 -35.23 -0.50 -20.60 16 7 C -0.39 -8.17 6.03 37.16 0.22 -7.95 16 8 C 0.06 1.48 1.68 -155.62 -0.26 1.22 16 9 C -0.51 -13.87 6.60 -34.44 -0.23 -14.10 16 10 H 0.06 1.74 7.82 -52.48 -0.41 1.32 16 11 C 0.09 2.59 5.38 -17.82 -0.10 2.50 16 12 N -0.88 -26.21 12.84 55.43 0.71 -25.50 16 13 Si 0.89 22.86 29.55 -169.99 -5.02 17.84 16 14 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 17 C -0.15 -3.60 9.34 -26.74 -0.25 -3.85 16 18 C -0.21 -4.30 9.89 -26.70 -0.26 -4.56 16 19 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.09 1.70 5.35 -51.93 -0.28 1.42 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 28 H 0.08 1.35 7.95 -51.93 -0.41 0.94 16 29 H 0.08 1.97 8.14 -51.92 -0.42 1.55 16 30 H 0.26 7.46 8.32 -40.82 -0.34 7.12 16 31 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 LS Contribution 290.68 15.07 4.38 4.38 Total: -1.00 -33.27 290.68 -7.75 -41.02 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.73 Total: -0.26 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: -0.27 Total: -38.62 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.71 Total: -25.50 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.50 Total: -20.60 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Atomic # 16 Polarization: 23.08 SS G_CDS: -1.33 Total: 21.75 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.27 -7.75 -41.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862573.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.385 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds