Wall clock time and date at job start Mon Mar 30 2020 03:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47080 * 2 1 4 4 C 1.53006 * 109.47375 * 119.99843 * 2 1 3 5 5 S 1.81394 * 109.47140 * 174.99973 * 4 2 1 6 6 O 1.42100 * 109.47152 * 63.61470 * 5 4 2 7 7 C 1.81402 * 102.99875 * 180.02562 * 5 4 2 8 8 C 1.53008 * 109.47108 * 174.53885 * 7 5 4 9 9 C 1.50697 * 115.56072 * 40.36396 * 8 7 5 10 10 H 1.08008 * 120.00063 * 266.85868 * 9 8 7 11 11 C 1.37872 * 120.00134 * 86.86146 * 9 8 7 12 12 N 1.31516 * 119.99934 * 353.99681 * 11 9 8 13 13 Si 1.86803 * 120.00117 * 173.99803 * 11 9 8 14 14 H 1.48497 * 109.47228 * 90.00360 * 13 11 9 15 15 H 1.48500 * 109.46809 * 210.00154 * 13 11 9 16 16 H 1.48500 * 109.47071 * 329.99589 * 13 11 9 17 17 C 1.52993 * 117.49856 * 186.05780 * 8 7 5 18 18 C 1.52996 * 60.03387 * 107.47171 * 17 8 7 19 19 H 1.09004 * 109.47288 * 299.99784 * 1 2 3 20 20 H 1.08996 * 109.47313 * 60.00387 * 1 2 3 21 21 H 1.09003 * 109.47094 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47215 * 239.99918 * 2 1 3 23 23 H 1.08996 * 109.47163 * 59.99886 * 3 2 1 24 24 H 1.09002 * 109.47101 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47043 * 300.00263 * 3 2 1 26 26 H 1.08998 * 109.46906 * 55.00282 * 4 2 1 27 27 H 1.09001 * 109.47274 * 295.00106 * 4 2 1 28 28 H 1.08997 * 109.47094 * 54.53519 * 7 5 4 29 29 H 1.09001 * 109.46843 * 294.52986 * 7 5 4 30 30 H 0.97001 * 119.99871 * 185.02338 * 12 11 9 31 31 H 1.09004 * 117.49944 * 214.97963 * 17 8 7 32 32 H 1.09000 * 117.49859 * 359.96614 * 17 8 7 33 33 H 1.09004 * 117.49524 * 107.50067 * 18 17 8 34 34 H 1.09000 * 117.50134 * 252.51740 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 3.8478 -0.8514 1.1766 6 8 4.4178 0.4501 1.2011 7 6 4.2566 -1.7202 2.7156 8 6 5.7544 -2.0319 2.7430 9 6 6.6551 -0.9409 2.2241 10 1 6.9597 -0.9393 1.1878 11 6 7.0905 0.0553 3.0720 12 7 6.6274 0.1215 4.3012 13 14 8.3381 1.3109 2.4751 14 1 7.6272 2.4709 1.8800 15 1 9.1641 1.7709 3.6202 16 1 9.2150 0.6889 1.4507 17 6 6.2764 -2.8897 3.8973 18 6 6.1794 -3.4804 2.4893 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.6766 1.9563 0.8899 24 1 3.1300 1.4425 -0.0005 25 1 1.6765 1.9563 -0.8900 26 1 1.6055 -1.7198 1.2952 27 1 1.7517 -0.1583 2.1370 28 1 3.6909 -2.6503 2.7690 29 1 4.0011 -1.0900 3.5675 30 1 6.8772 0.8632 4.8742 31 1 7.2714 -2.6649 4.2814 32 1 5.5530 -3.2316 4.6375 33 1 7.1107 -3.6442 1.9470 34 1 5.3920 -4.2107 2.3030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862573.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:55 Heat of formation + Delta-G solvation = -50.212854 kcal Electronic energy + Delta-G solvation = -14678.653664 eV Core-core repulsion = 12316.796700 eV Total energy + Delta-G solvation = -2361.856964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.30736 -37.03598 -36.08584 -33.95465 -29.46788 -28.22356 -27.95340 -27.18224 -22.81961 -21.47155 -20.78109 -18.35923 -17.64158 -16.67227 -16.53232 -15.89134 -15.74088 -15.11162 -14.74846 -14.39919 -14.14288 -13.77426 -13.41179 -13.27199 -13.00917 -12.90190 -12.85372 -12.40336 -12.33744 -12.22202 -11.88908 -11.75267 -11.58502 -11.41993 -10.86704 -10.61935 -10.24344 -9.75129 -8.71567 -8.12863 -6.21025 1.05576 1.30723 1.37815 1.40702 2.29639 2.42338 3.19903 3.39829 3.56750 3.90107 4.05677 4.25480 4.38351 4.54905 4.67017 4.76255 4.78017 4.80727 4.87157 4.96773 4.97490 5.09547 5.14473 5.16792 5.30451 5.35563 5.47783 5.49975 5.68281 5.73759 5.82802 6.36060 6.86028 7.50739 8.94990 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027860 B = 0.009648 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.795480 B = 2901.504349 C = 3589.482015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.073 4.073 3 C -0.178 4.178 4 C -0.459 4.459 5 S 1.294 4.706 6 O -0.887 6.887 7 C -0.388 4.388 8 C 0.024 3.976 9 C -0.500 4.500 10 H 0.060 0.940 11 C 0.036 3.964 12 N -0.912 5.912 13 Si 0.930 3.070 14 H -0.294 1.294 15 H -0.285 1.285 16 H -0.255 1.255 17 C -0.172 4.172 18 C -0.168 4.168 19 H 0.038 0.962 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.104 0.896 23 H 0.028 0.972 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.145 0.855 27 H 0.052 0.948 28 H 0.123 0.877 29 H 0.037 0.963 30 H 0.252 0.748 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.796 -7.007 -9.488 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.092 4.092 3 C -0.235 4.235 4 C -0.596 4.596 5 S 1.494 4.506 6 O -0.882 6.882 7 C -0.525 4.525 8 C 0.023 3.977 9 C -0.539 4.539 10 H 0.078 0.922 11 C -0.164 4.164 12 N -0.551 5.551 13 Si 0.757 3.243 14 H -0.221 1.221 15 H -0.211 1.211 16 H -0.179 1.179 17 C -0.211 4.211 18 C -0.205 4.205 19 H 0.057 0.943 20 H 0.085 0.915 21 H 0.095 0.905 22 H 0.122 0.878 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.163 0.837 27 H 0.071 0.929 28 H 0.142 0.858 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.109 -6.590 -9.999 15.672 hybrid contribution 0.200 2.510 2.497 3.546 sum -9.909 -4.079 -7.503 13.081 Atomic orbital electron populations 1.21836 0.93486 1.02900 1.01478 1.20759 0.97256 0.94385 0.96780 1.22264 1.02490 0.97714 1.01043 1.27978 1.22224 1.07426 1.01963 1.69114 0.83098 0.97316 1.01037 1.93017 1.71749 1.41060 1.82401 1.27072 1.01980 1.08464 1.15019 1.18406 0.89626 0.89568 1.00087 1.20733 1.28879 1.08822 0.95442 0.92235 1.25490 0.97315 0.98874 0.94722 1.70089 1.45976 1.30938 1.08063 0.85985 0.79909 0.80235 0.78193 1.22120 1.21105 1.17908 1.22414 1.00181 1.06896 0.91633 1.23203 1.02985 0.96490 0.97788 0.94303 0.91492 0.90523 0.87783 0.95236 0.92382 0.90998 0.83651 0.92876 0.85845 0.94374 0.93955 0.93245 0.91164 0.89855 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.19 71.98 0.66 -2.00 16 2 C -0.07 -1.76 2.92 -10.79 -0.03 -1.79 16 3 C -0.18 -5.51 8.85 71.98 0.64 -4.88 16 4 C -0.46 -12.47 5.37 71.98 0.39 -12.08 16 5 S 1.29 46.06 12.35 -56.49 -0.70 45.36 16 6 O -0.89 -44.93 14.14 -148.98 -2.11 -47.04 16 7 C -0.39 -15.84 6.03 71.98 0.43 -15.41 16 8 C 0.02 1.15 1.68 -52.90 -0.09 1.06 16 9 C -0.50 -27.66 6.60 25.60 0.17 -27.49 16 10 H 0.06 3.25 7.82 -2.91 -0.02 3.23 16 11 C 0.04 2.13 5.38 84.65 0.46 2.58 16 12 N -0.91 -56.54 12.84 21.45 0.28 -56.26 16 13 Si 0.93 48.12 29.55 68.60 2.03 50.15 16 14 H -0.29 -15.94 7.11 99.48 0.71 -15.23 16 15 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 16 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 17 C -0.17 -7.96 9.34 30.59 0.29 -7.68 16 18 C -0.17 -6.32 9.89 30.62 0.30 -6.02 16 19 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 20 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 2.21 5.35 -2.39 -0.01 2.20 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.15 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.12 3.77 7.95 -2.39 -0.02 3.75 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.25 15.24 8.32 -92.71 -0.77 14.47 16 31 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 34 H 0.11 3.29 8.09 -2.39 -0.02 3.27 16 Total: -1.00 -76.22 290.68 3.75 -72.47 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.04 Total: 9.02 kcal Atomic # 6 Polarization: -76.91 SS G_CDS: 3.21 Total: -73.70 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.28 Total: -56.26 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -2.11 Total: -47.04 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Atomic # 16 Polarization: 46.06 SS G_CDS: -0.70 Total: 45.36 kcal Total: -76.22 3.75 -72.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862573.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.253 kcal (2) G-P(sol) polarization free energy of solvation -76.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds