Wall clock time and date at job start Mon Mar 30 2020 03:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 H 1.09002 * 109.47482 * 54.47348 * 3 2 1 5 5 C 1.50707 * 109.47272 * 174.47288 * 3 2 1 6 6 H 1.08000 * 120.00240 * 114.55291 * 5 3 2 7 7 C 1.37876 * 119.99571 * 294.55432 * 5 3 2 8 8 N 1.31509 * 120.00151 * 350.79609 * 7 5 3 9 9 Si 1.86800 * 119.99837 * 170.79919 * 7 5 3 10 10 H 1.48503 * 109.47179 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47409 * 119.99814 * 9 7 5 12 12 H 1.48501 * 109.47026 * 240.00352 * 9 7 5 13 13 C 1.50704 * 109.47221 * 294.47072 * 3 2 1 14 14 C 1.37868 * 120.01966 * 299.72715 * 13 3 2 15 15 C 1.38718 * 120.69124 * 179.76511 * 14 13 3 16 16 C 1.37757 * 120.27310 * 0.50863 * 15 14 13 17 17 C 1.39384 * 119.60213 * 359.75013 * 16 15 14 18 18 C 1.46790 * 134.34487 * 180.02562 * 17 16 15 19 19 C 1.33988 * 106.18377 * 179.97438 * 18 17 16 20 20 O 1.34451 * 110.16205 * 0.02562 * 19 18 17 21 21 C 1.34832 * 110.89327 * 359.97438 * 20 19 18 22 22 H 1.09006 * 109.46911 * 55.68916 * 1 2 3 23 23 H 1.09001 * 109.47550 * 175.67957 * 1 2 3 24 24 H 1.08995 * 109.47539 * 295.68851 * 1 2 3 25 25 H 1.09002 * 109.46723 * 119.99760 * 2 1 3 26 26 H 1.09002 * 109.47370 * 239.99648 * 2 1 3 27 27 H 0.97001 * 119.99974 * 180.02562 * 8 7 5 28 28 H 1.08000 * 119.65053 * 359.97438 * 14 13 3 29 29 H 1.07996 * 119.86338 * 180.25571 * 15 14 13 30 30 H 1.08001 * 120.19891 * 179.77392 * 16 15 14 31 31 H 1.07994 * 126.90652 * 359.97438 * 18 17 16 32 32 H 1.08004 * 124.91981 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5981 1.9841 0.8364 5 6 3.5408 1.4446 0.1369 6 1 4.1565 1.8065 -0.6733 7 6 4.1279 0.9845 1.2964 8 7 3.3849 0.7147 2.3474 9 14 5.9788 0.7446 1.3746 10 1 6.5817 1.1160 0.0693 11 1 6.5448 1.6049 2.4445 12 1 6.2813 -0.6786 1.6719 13 6 1.6526 2.1123 -1.2932 14 6 2.1017 1.6054 -2.4941 15 6 1.7497 2.2080 -3.6930 16 6 0.9521 3.3312 -3.6978 17 6 0.4958 3.8567 -2.4902 18 6 -0.3443 5.0029 -2.1222 19 6 -0.4279 4.9906 -0.7850 20 8 0.2729 3.9571 -0.2863 21 6 0.8479 3.2441 -1.2757 22 1 -0.3633 0.5793 -0.8489 23 1 -0.3634 -1.0247 -0.0774 24 1 -0.3634 0.4454 0.9260 25 1 1.8932 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 3.7980 0.3914 3.1634 28 1 2.7314 0.7280 -2.5016 29 1 2.1057 1.7972 -4.6262 30 1 0.6818 3.8015 -4.6317 31 1 -0.8028 5.7132 -2.7942 32 1 -0.9778 5.7075 -0.1933 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363246.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:17 Heat of formation + Delta-G solvation = -4.836290 kcal Electronic energy + Delta-G solvation = -15803.314429 eV Core-core repulsion = 13307.981189 eV Total energy + Delta-G solvation = -2495.333239 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.20570 -39.15554 -36.65138 -33.98227 -33.00688 -31.19260 -30.12302 -28.62334 -25.33401 -23.85635 -23.29332 -22.27320 -20.74653 -18.56435 -18.05173 -17.71929 -16.89944 -16.68267 -16.10189 -15.43294 -14.87626 -14.56747 -14.30857 -13.88652 -13.42761 -13.41379 -13.29890 -13.01763 -12.77891 -12.67405 -12.50399 -12.21251 -11.91798 -11.60112 -11.16861 -11.01779 -10.68580 -10.45189 -9.37081 -8.84249 -8.12974 -6.23695 0.19089 0.58570 1.38748 1.40578 1.52393 1.61320 2.14462 2.42136 2.95598 3.15995 3.70411 3.90249 4.21415 4.34180 4.47180 4.49866 4.55769 4.61884 4.71444 4.74960 4.89205 4.99880 5.17834 5.28202 5.36371 5.45958 5.52536 5.60564 5.66937 5.71228 5.93809 5.98291 6.02096 6.32359 6.44682 6.85329 7.42306 8.94249 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.027435 B = 0.008631 C = 0.008378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.354325 B = 3243.444822 C = 3341.127852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 C 0.082 3.918 4 H -0.004 1.004 5 C -0.525 4.525 6 H 0.053 0.947 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.953 3.047 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.275 1.275 13 C -0.046 4.046 14 C -0.110 4.110 15 C -0.128 4.128 16 C -0.099 4.099 17 C -0.150 4.150 18 C -0.218 4.218 19 C -0.006 4.006 20 O -0.225 6.225 21 C 0.012 3.988 22 H 0.042 0.958 23 H 0.062 0.938 24 H 0.032 0.968 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.262 0.738 28 H 0.129 0.871 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.190 0.810 32 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 5.220 -10.478 13.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.136 4.136 3 C 0.063 3.937 4 H 0.014 0.986 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.778 3.222 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.201 1.201 13 C -0.046 4.046 14 C -0.128 4.128 15 C -0.145 4.145 16 C -0.117 4.117 17 C -0.151 4.151 18 C -0.236 4.236 19 C -0.070 4.070 20 O -0.127 6.127 21 C -0.034 4.034 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.147 0.853 29 H 0.175 0.825 30 H 0.174 0.826 31 H 0.208 0.792 32 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -6.655 5.083 -10.022 13.060 hybrid contribution 0.955 -0.099 0.712 1.196 sum -5.700 4.984 -9.310 12.000 Atomic orbital electron populations 1.21690 0.96777 1.00822 0.99916 1.21379 0.93969 0.97994 1.00216 1.17658 0.94888 0.92371 0.88779 0.98574 1.21435 0.91690 1.42201 1.00921 0.92887 1.25742 1.02389 0.95279 0.94965 1.70113 1.37042 1.45793 1.02637 0.85586 0.80488 0.77948 0.78174 1.18937 1.20990 1.20059 1.19455 0.94805 0.92480 0.97906 1.20927 1.00072 1.00966 0.90874 1.21333 0.98840 0.96220 0.98157 1.20735 0.98223 0.96387 0.96311 1.20433 1.02435 0.98268 0.93935 1.22830 1.04759 1.00345 0.95679 1.24862 0.96384 0.90370 0.95368 1.84037 1.55673 1.36569 1.36416 1.19867 1.00544 0.96538 0.86493 0.93938 0.91929 0.94886 0.93522 0.93304 0.92936 0.85343 0.82461 0.82644 0.79243 0.73988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 9.80 71.98 0.71 -4.93 16 2 C -0.10 -4.75 5.20 30.59 0.16 -4.59 16 3 C 0.08 4.35 1.81 -12.28 -0.02 4.33 16 4 H 0.00 -0.25 7.74 -2.39 -0.02 -0.26 16 5 C -0.52 -29.87 8.18 25.60 0.21 -29.66 16 6 H 0.05 2.99 7.54 -2.91 -0.02 2.97 16 7 C 0.02 0.86 5.16 84.66 0.44 1.30 16 8 N -0.92 -54.71 12.15 21.45 0.26 -54.45 16 9 Si 0.95 44.44 29.55 68.60 2.03 46.47 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 C -0.05 -2.13 3.70 -19.80 -0.07 -2.20 16 14 C -0.11 -4.36 8.56 22.30 0.19 -4.16 16 15 C -0.13 -3.97 10.03 22.27 0.22 -3.75 16 16 C -0.10 -2.97 10.10 22.43 0.23 -2.74 16 17 C -0.15 -5.29 6.40 -20.21 -0.13 -5.42 16 18 C -0.22 -6.01 11.14 23.54 0.26 -5.75 16 19 C -0.01 -0.17 11.96 66.85 0.80 0.63 16 20 O -0.22 -9.49 10.38 -9.19 -0.10 -9.58 16 21 C 0.01 0.53 7.05 22.98 0.16 0.69 16 22 H 0.04 1.72 7.27 -2.38 -0.02 1.70 16 23 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 2.52 6.78 -2.39 -0.02 2.51 16 26 H 0.05 2.22 7.21 -2.39 -0.02 2.20 16 27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.13 5.00 7.53 -2.91 -0.02 4.98 16 29 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 31 H 0.19 3.52 8.06 -2.91 -0.02 3.49 16 32 H 0.24 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -69.24 273.36 6.45 -62.79 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.10 Total: 11.03 kcal Atomic # 6 Polarization: -59.41 SS G_CDS: 3.15 Total: -56.26 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.26 Total: -54.45 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.10 Total: -9.58 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -69.24 6.45 -62.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363246.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.955 kcal (2) G-P(sol) polarization free energy of solvation -69.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds