Wall clock time and date at job start Mon Mar 30 2020 03:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31185 * 1 3 3 Si 1.86803 * 119.99832 * 2 1 4 4 H 1.48506 * 109.47177 * 269.99812 * 3 2 1 5 5 H 1.48498 * 109.47325 * 30.00418 * 3 2 1 6 6 H 1.48506 * 109.46604 * 150.00098 * 3 2 1 7 7 C 1.39569 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.41162 * 119.99792 * 359.97438 * 7 2 1 10 10 C 1.41865 * 126.61206 * 359.97438 * 9 7 2 11 11 N 1.30243 * 108.41975 * 180.02562 * 10 9 7 12 12 N 1.39857 * 109.59523 * 0.02562 * 11 10 9 13 13 C 1.39814 * 125.76973 * 179.97438 * 12 11 10 14 14 C 1.39359 * 120.85376 * 145.00790 * 13 12 11 15 15 C 1.37980 * 119.07470 * 180.02562 * 14 13 12 16 16 N 1.31954 * 120.83512 * 0.02562 * 15 14 13 17 17 C 1.31944 * 121.88915 * 0.02562 * 16 15 14 18 18 C 1.37983 * 120.83866 * 359.97316 * 17 16 15 19 19 C 1.36047 * 108.45321 * 0.23963 * 12 11 10 20 20 N 1.37699 * 126.62196 * 179.72902 * 19 12 11 21 21 H 0.97003 * 120.00018 * 359.97438 * 1 2 3 22 22 H 1.07999 * 125.78626 * 0.04345 * 10 9 7 23 23 H 1.08003 * 120.46402 * 0.03248 * 14 13 12 24 24 H 1.08007 * 119.58057 * 180.29214 * 15 14 13 25 25 H 1.08000 * 119.58369 * 179.97438 * 17 16 15 26 26 H 1.07996 * 120.46403 * 180.02562 * 18 17 16 27 27 H 0.96994 * 119.99999 * 359.97438 * 20 19 12 28 28 H 0.96995 * 119.99934 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3119 0.0000 0.0000 3 14 2.2458 1.6178 0.0000 4 1 2.4934 2.0465 -1.4001 5 1 1.4433 2.6527 0.7001 6 1 3.5434 1.4401 0.7001 7 6 2.0097 -1.2087 -0.0005 8 1 3.0897 -1.2087 -0.0001 9 6 1.3039 -2.4312 -0.0005 10 6 -0.1053 -2.5945 0.0005 11 7 -0.3718 -3.8694 0.0007 12 7 0.8219 -4.5981 0.0004 13 6 0.9283 -5.9922 0.0010 14 6 1.9596 -6.6305 -0.6853 15 6 2.0293 -8.0084 -0.6606 16 7 1.1357 -8.7190 0.0009 17 6 0.1445 -8.1518 0.6617 18 6 0.0047 -6.7793 0.6861 19 6 1.8619 -3.7210 0.0054 20 7 3.2023 -4.0363 0.0121 21 1 -0.4850 0.8401 0.0004 22 1 -0.8335 -1.7970 0.0007 23 1 2.6942 -6.0548 -1.2289 24 1 2.8280 -8.5113 -1.1857 25 1 -0.5665 -8.7695 1.1902 26 1 -0.8087 -6.3213 1.2293 27 1 3.4820 -4.9650 0.0140 28 1 3.8667 -3.3296 0.0156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087579918.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:43 Heat of formation + Delta-G solvation = 116.006564 kcal Electronic energy + Delta-G solvation = -15106.011164 eV Core-core repulsion = 12544.670472 eV Total energy + Delta-G solvation = -2561.340692 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33915 -39.01237 -34.12936 -33.58723 -32.56880 -30.94620 -29.03183 -27.95004 -24.78024 -23.26548 -22.87781 -19.98537 -19.58845 -17.74052 -16.55855 -15.97365 -15.84723 -15.28511 -14.81592 -14.43554 -14.06984 -13.54667 -13.27176 -13.11705 -12.80500 -11.77126 -11.39756 -11.20659 -11.07955 -10.74068 -10.20539 -10.07059 -9.84063 -9.34847 -9.19160 -8.99739 -8.98665 -7.52975 -6.79990 -6.49327 -3.90369 1.32370 1.39326 3.03162 3.16987 3.19194 3.34607 3.37368 4.07911 4.11966 4.25553 4.63680 4.82386 5.04574 5.25009 5.40909 5.47578 5.73598 5.91359 6.01987 6.24498 6.63147 6.82391 6.89616 7.03523 7.51730 7.71701 7.95029 8.18542 8.45266 8.53419 8.65224 8.97249 9.09510 9.31137 10.51925 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.059176 B = 0.006507 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.051538 B = 4302.350813 C = 4695.347776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.062 3.938 3 Si 0.917 3.083 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.424 4.424 8 H 0.066 0.934 9 C -0.064 4.064 10 C 0.085 3.915 11 N -0.352 5.352 12 N -0.362 5.362 13 C 0.249 3.751 14 C -0.221 4.221 15 C 0.120 3.880 16 N -0.515 5.515 17 C 0.116 3.884 18 C -0.192 4.192 19 C 0.188 3.812 20 N -0.858 5.858 21 H 0.274 0.726 22 H 0.213 0.787 23 H 0.136 0.864 24 H 0.155 0.845 25 H 0.155 0.845 26 H 0.139 0.861 27 H 0.381 0.619 28 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.387 -7.636 0.124 8.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.147 4.147 3 Si 0.743 3.257 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.459 4.459 8 H 0.085 0.915 9 C -0.078 4.078 10 C -0.102 4.102 11 N -0.172 5.172 12 N -0.145 5.145 13 C 0.143 3.857 14 C -0.246 4.246 15 C -0.037 4.037 16 N -0.227 5.227 17 C -0.039 4.039 18 C -0.215 4.215 19 C -0.026 4.026 20 N -0.411 5.411 21 H 0.085 0.915 22 H 0.229 0.771 23 H 0.154 0.846 24 H 0.172 0.828 25 H 0.172 0.828 26 H 0.157 0.843 27 H 0.209 0.791 28 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.271 -9.143 0.133 9.422 hybrid contribution 1.375 2.318 -0.030 2.695 sum 3.646 -6.825 0.103 7.738 Atomic orbital electron populations 1.69416 1.06965 1.27985 1.43840 1.25542 0.94847 1.00428 0.93859 0.86170 0.79773 0.81100 0.78621 1.20080 1.20632 1.19328 1.18403 0.93301 0.88820 1.45400 0.91547 1.17517 0.91564 0.89398 1.09301 1.25249 0.97902 0.91941 0.95097 1.76937 1.01771 1.06455 1.32002 1.45145 1.04912 1.01092 1.63317 1.17720 0.94213 0.81660 0.92102 1.22001 1.02440 0.96334 1.03800 1.22463 0.96335 0.89870 0.94990 1.67639 1.04187 1.40869 1.09964 1.22540 0.94733 0.91669 0.95003 1.21983 1.02411 0.94699 1.02446 1.18162 0.80972 0.89091 1.14425 1.40785 1.02109 1.08785 1.89373 0.91486 0.77148 0.84588 0.82767 0.82756 0.84296 0.79145 0.76387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.71 10.32 55.53 0.57 -21.13 15 2 C 0.06 1.56 5.49 -17.33 -0.10 1.47 15 3 Si 0.92 19.08 29.56 -169.99 -5.02 14.06 15 4 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 7 C -0.42 -11.00 9.24 -37.98 -0.35 -11.35 15 8 H 0.07 1.62 7.36 -52.49 -0.39 1.24 15 9 C -0.06 -1.68 5.96 -106.53 -0.63 -2.31 15 10 C 0.08 2.21 10.89 -16.84 -0.18 2.03 15 11 N -0.35 -8.77 12.22 30.95 0.38 -8.39 15 12 N -0.36 -8.31 3.75 -8.93 -0.03 -8.34 15 13 C 0.25 4.83 6.41 -83.38 -0.53 4.29 15 14 C -0.22 -3.60 8.52 -39.26 -0.33 -3.93 15 15 C 0.12 1.71 11.17 -17.59 -0.20 1.51 15 16 N -0.52 -7.87 10.36 -13.33 -0.14 -8.01 15 17 C 0.12 1.72 11.17 -17.60 -0.20 1.52 15 18 C -0.19 -3.32 9.87 -39.26 -0.39 -3.71 15 19 C 0.19 4.40 7.83 -152.52 -1.19 3.21 15 20 N -0.86 -16.01 8.67 31.81 0.28 -15.74 15 21 H 0.27 6.50 8.30 -40.82 -0.34 6.16 15 22 H 0.21 5.56 5.75 -52.49 -0.30 5.25 15 23 H 0.14 2.09 6.43 -52.48 -0.34 1.75 15 24 H 0.16 1.64 8.06 -52.48 -0.42 1.21 15 25 H 0.16 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.14 2.40 8.06 -52.49 -0.42 1.98 15 27 H 0.38 6.07 6.24 -40.82 -0.25 5.82 15 28 H 0.41 7.07 8.31 -40.82 -0.34 6.73 15 LS Contribution 249.32 15.07 3.76 3.76 Total: -1.00 -29.06 249.32 -6.34 -35.40 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -2.02 Total: 15.67 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -4.11 Total: -7.28 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 1.06 Total: -61.61 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.06 -6.34 -35.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087579918.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.407 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds