Wall clock time and date at job start Mon Mar 30 2020 03:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31185 * 1 3 3 Si 1.86803 * 119.99832 * 2 1 4 4 H 1.48506 * 109.47177 * 269.99812 * 3 2 1 5 5 H 1.48498 * 109.47325 * 30.00418 * 3 2 1 6 6 H 1.48506 * 109.46604 * 150.00098 * 3 2 1 7 7 C 1.39569 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.41162 * 119.99792 * 359.97438 * 7 2 1 10 10 C 1.41865 * 126.61206 * 359.97438 * 9 7 2 11 11 N 1.30243 * 108.41975 * 180.02562 * 10 9 7 12 12 N 1.39857 * 109.59523 * 0.02562 * 11 10 9 13 13 C 1.39814 * 125.76973 * 179.97438 * 12 11 10 14 14 C 1.39359 * 120.85376 * 145.00790 * 13 12 11 15 15 C 1.37980 * 119.07470 * 180.02562 * 14 13 12 16 16 N 1.31954 * 120.83512 * 0.02562 * 15 14 13 17 17 C 1.31944 * 121.88915 * 0.02562 * 16 15 14 18 18 C 1.37983 * 120.83866 * 359.97316 * 17 16 15 19 19 C 1.36047 * 108.45321 * 0.23963 * 12 11 10 20 20 N 1.37699 * 126.62196 * 179.72902 * 19 12 11 21 21 H 0.97003 * 120.00018 * 359.97438 * 1 2 3 22 22 H 1.07999 * 125.78626 * 0.04345 * 10 9 7 23 23 H 1.08003 * 120.46402 * 0.03248 * 14 13 12 24 24 H 1.08007 * 119.58057 * 180.29214 * 15 14 13 25 25 H 1.08000 * 119.58369 * 179.97438 * 17 16 15 26 26 H 1.07996 * 120.46403 * 180.02562 * 18 17 16 27 27 H 0.96994 * 119.99999 * 359.97438 * 20 19 12 28 28 H 0.96995 * 119.99934 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3119 0.0000 0.0000 3 14 2.2458 1.6178 0.0000 4 1 2.4934 2.0465 -1.4001 5 1 1.4433 2.6527 0.7001 6 1 3.5434 1.4401 0.7001 7 6 2.0097 -1.2087 -0.0005 8 1 3.0897 -1.2087 -0.0001 9 6 1.3039 -2.4312 -0.0005 10 6 -0.1053 -2.5945 0.0005 11 7 -0.3718 -3.8694 0.0007 12 7 0.8219 -4.5981 0.0004 13 6 0.9283 -5.9922 0.0010 14 6 1.9596 -6.6305 -0.6853 15 6 2.0293 -8.0084 -0.6606 16 7 1.1357 -8.7190 0.0009 17 6 0.1445 -8.1518 0.6617 18 6 0.0047 -6.7793 0.6861 19 6 1.8619 -3.7210 0.0054 20 7 3.2023 -4.0363 0.0121 21 1 -0.4850 0.8401 0.0004 22 1 -0.8335 -1.7970 0.0007 23 1 2.6942 -6.0548 -1.2289 24 1 2.8280 -8.5113 -1.1857 25 1 -0.5665 -8.7695 1.1902 26 1 -0.8087 -6.3213 1.2293 27 1 3.4820 -4.9650 0.0140 28 1 3.8667 -3.3296 0.0156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087579918.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:42 Heat of formation + Delta-G solvation = 97.107016 kcal Electronic energy + Delta-G solvation = -15106.830710 eV Core-core repulsion = 12544.670472 eV Total energy + Delta-G solvation = -2562.160238 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92657 -40.50944 -35.81345 -35.31051 -34.18529 -32.21177 -30.67656 -29.74087 -26.56523 -24.60197 -24.36181 -21.74502 -21.25939 -19.44012 -18.22974 -17.42796 -17.25050 -16.96014 -16.22124 -16.06216 -15.60065 -15.10474 -14.62376 -14.53788 -14.50651 -13.54452 -12.91545 -12.82447 -12.73490 -12.55208 -11.86482 -11.70493 -11.53075 -10.97097 -10.83534 -10.59550 -10.22159 -9.24505 -8.59715 -8.30257 -5.80205 -0.05585 0.11019 1.38414 1.47878 1.58862 1.61883 1.72591 2.36702 2.37350 2.80386 3.27134 3.54655 3.56220 3.78191 3.90593 4.10262 4.41195 4.58444 4.72770 4.83135 4.95138 5.15604 5.29578 5.59879 5.69094 5.98790 6.13358 6.56502 6.85353 6.92210 6.95099 7.19500 7.25510 7.52098 8.72443 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.059176 B = 0.006507 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.051538 B = 4302.350813 C = 4695.347776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.014 3.986 3 Si 0.987 3.013 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.453 4.453 8 H 0.072 0.928 9 C -0.113 4.113 10 C 0.054 3.946 11 N -0.369 5.369 12 N -0.364 5.364 13 C 0.204 3.796 14 C -0.216 4.216 15 C 0.133 3.867 16 N -0.515 5.515 17 C 0.129 3.871 18 C -0.201 4.201 19 C 0.215 3.785 20 N -0.838 5.838 21 H 0.276 0.724 22 H 0.199 0.801 23 H 0.145 0.855 24 H 0.199 0.801 25 H 0.192 0.808 26 H 0.131 0.869 27 H 0.397 0.603 28 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 -9.776 -0.052 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.191 4.191 3 Si 0.811 3.189 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.091 0.909 9 C -0.127 4.127 10 C -0.130 4.130 11 N -0.192 5.192 12 N -0.148 5.148 13 C 0.102 3.898 14 C -0.240 4.240 15 C -0.023 4.023 16 N -0.225 5.225 17 C -0.027 4.027 18 C -0.224 4.224 19 C -0.005 4.005 20 N -0.392 5.392 21 H 0.086 0.914 22 H 0.215 0.785 23 H 0.163 0.837 24 H 0.216 0.784 25 H 0.209 0.791 26 H 0.149 0.851 27 H 0.228 0.772 28 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.113 -11.344 -0.043 12.067 hybrid contribution 0.867 2.579 0.022 2.721 sum 4.980 -8.765 -0.021 10.081 Atomic orbital electron populations 1.69536 1.08227 1.28669 1.44947 1.26376 0.95665 1.03533 0.93548 0.85105 0.78502 0.76800 0.78538 1.19764 1.20434 1.18630 1.18662 0.93662 0.89545 1.46913 0.90948 1.17844 0.91939 0.90793 1.12132 1.25027 0.98143 0.92233 0.97603 1.76798 1.03076 1.06146 1.33148 1.45312 1.04036 1.02480 1.62978 1.18289 0.96683 0.80208 0.94634 1.22193 1.01394 0.97356 1.03062 1.23135 0.96552 0.88927 0.93712 1.67801 1.04205 1.40913 1.09619 1.23059 0.94839 0.90724 0.94042 1.22106 1.01891 0.95832 1.02538 1.18414 0.82597 0.88821 1.10625 1.40765 1.00373 1.10216 1.87858 0.91350 0.78549 0.83701 0.78433 0.79135 0.85119 0.77199 0.75434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.05 10.32 21.78 0.22 -46.82 15 2 C 0.01 0.73 5.49 85.11 0.47 1.19 15 3 Si 0.99 39.81 29.56 68.60 2.03 41.84 15 4 H -0.27 -10.72 7.11 99.48 0.71 -10.02 15 5 H -0.28 -11.02 7.11 99.48 0.71 -10.31 15 6 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 7 C -0.45 -24.08 9.24 23.31 0.22 -23.86 15 8 H 0.07 3.58 7.36 -2.91 -0.02 3.56 15 9 C -0.11 -6.10 5.96 -21.10 -0.13 -6.23 15 10 C 0.05 2.99 10.89 85.83 0.93 3.92 15 11 N -0.37 -19.11 12.22 -55.99 -0.68 -19.79 15 12 N -0.36 -16.78 3.75 -182.17 -0.68 -17.46 15 13 C 0.20 7.66 6.41 38.41 0.25 7.91 15 14 C -0.22 -6.37 8.52 22.48 0.19 -6.18 15 15 C 0.13 3.18 11.17 84.61 0.95 4.13 15 16 N -0.51 -13.49 10.36 -196.08 -2.03 -15.52 15 17 C 0.13 3.38 11.17 84.62 0.95 4.32 15 18 C -0.20 -6.65 9.87 22.48 0.22 -6.43 15 19 C 0.21 10.03 7.83 132.72 1.04 11.07 15 20 N -0.84 -29.91 8.67 -53.28 -0.46 -30.37 15 21 H 0.28 13.66 8.30 -92.71 -0.77 12.89 15 22 H 0.20 11.17 5.75 -2.91 -0.02 11.16 15 23 H 0.15 3.97 6.43 -2.91 -0.02 3.95 15 24 H 0.20 3.00 8.06 -2.91 -0.02 2.97 15 25 H 0.19 3.52 8.06 -2.91 -0.02 3.49 15 26 H 0.13 4.51 8.06 -2.91 -0.02 4.48 15 27 H 0.40 11.60 6.24 -92.71 -0.58 11.02 15 28 H 0.41 13.75 8.31 -92.71 -0.77 12.97 15 Total: -1.00 -64.90 249.32 3.35 -61.55 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -0.13 Total: 36.74 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 5.08 Total: -10.15 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -3.64 Total: -129.97 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -64.90 3.35 -61.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087579918.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.660 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds