Wall clock time and date at job start Mon Mar 30 2020 03:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09009 * 110.26773 * 300.70149 * 9 7 2 11 11 C 1.54330 * 110.30098 * 62.76316 * 9 7 2 12 12 C 1.54340 * 102.40237 * 92.53560 * 11 9 7 13 13 C 1.51341 * 105.17040 * 26.36371 * 12 11 9 14 14 C 1.38494 * 130.51831 * 162.92844 * 13 12 11 15 15 C 1.38409 * 120.39450 * 180.13098 * 14 13 12 16 16 C 1.39279 * 120.21502 * 359.93812 * 15 14 13 17 17 C 1.38772 * 118.83498 * 359.69828 * 16 15 14 18 18 C 1.38032 * 121.02089 * 0.52373 * 17 16 15 19 19 C 1.51648 * 107.05554 * 180.80042 * 17 16 15 20 20 C 1.54708 * 101.91157 * 15.41568 * 19 17 16 21 21 O 1.36136 * 129.89684 * 179.44803 * 16 15 14 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.08994 * 110.82736 * 210.76279 * 11 9 7 24 24 H 1.09004 * 110.82086 * 334.31280 * 11 9 7 25 25 H 1.08999 * 110.30504 * 145.28883 * 12 11 9 26 26 H 1.09005 * 110.30537 * 267.34652 * 12 11 9 27 27 H 1.08003 * 119.71801 * 0.04106 * 14 13 12 28 28 H 1.07997 * 119.85946 * 179.97438 * 15 14 13 29 29 H 1.09002 * 110.94461 * 133.57476 * 19 17 16 30 30 H 1.09006 * 110.93867 * 257.22567 * 19 17 16 31 31 H 1.09003 * 110.75042 * 93.05807 * 20 19 17 32 32 H 1.09004 * 110.75088 * 216.22025 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6104 -2.5653 0.8790 11 6 0.4091 -2.6313 -1.2872 12 6 1.3655 -3.3885 -2.2328 13 6 2.2834 -4.1743 -1.3216 14 6 3.1133 -5.2499 -1.5908 15 6 3.8721 -5.8185 -0.5824 16 6 3.8082 -5.3120 0.7134 17 6 2.9786 -4.2292 0.9686 18 6 2.2179 -3.6639 -0.0349 19 6 3.1291 -3.8904 2.4391 20 6 4.4189 -4.6584 2.8133 21 8 4.4510 -5.7184 1.8425 22 1 -0.4850 0.8401 0.0004 23 1 -0.4934 -3.2135 -1.1016 24 1 0.1620 -1.6495 -1.6911 25 1 0.8034 -4.0642 -2.8775 26 1 1.9398 -2.6835 -2.8339 27 1 3.1667 -5.6472 -2.5936 28 1 4.5161 -6.6572 -0.8019 29 1 3.2596 -2.8175 2.5804 30 1 2.2770 -4.2561 3.0123 31 1 5.2938 -4.0160 2.7129 32 1 4.3501 -5.0591 3.8247 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114593383.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:29 Heat of formation + Delta-G solvation = -16.655692 kcal Electronic energy + Delta-G solvation = -15869.291100 eV Core-core repulsion = 13373.445333 eV Total energy + Delta-G solvation = -2495.845767 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.58570 -38.12449 -34.47729 -32.16735 -32.03777 -29.16441 -27.46321 -26.95052 -24.04006 -22.58774 -21.26384 -20.23851 -19.20263 -16.53485 -16.39968 -16.01250 -15.58240 -14.62985 -14.27392 -13.76744 -13.38639 -13.08665 -12.52013 -12.29713 -12.06261 -11.93243 -11.28927 -11.10504 -11.04464 -10.89564 -10.73144 -10.44089 -10.19730 -10.11012 -9.87068 -9.42954 -9.12311 -8.41207 -7.85454 -7.31493 -6.07179 -4.13087 1.94991 2.09464 3.27736 3.32652 3.35772 3.72480 4.30396 4.44558 4.97249 5.13585 5.22667 5.34343 5.40131 5.52729 5.72899 5.85772 5.97060 6.08588 6.16527 6.20413 6.31758 6.41658 6.56686 6.82623 6.89924 6.99353 7.08242 7.14636 7.27626 7.46182 7.59745 7.81338 7.84457 7.88475 8.33054 8.88456 9.50676 10.99695 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.026550 B = 0.009632 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.373190 B = 2906.188272 C = 3541.323671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.055 0.945 9 C 0.080 3.920 10 H 0.037 0.963 11 C -0.102 4.102 12 C -0.070 4.070 13 C -0.126 4.126 14 C -0.085 4.085 15 C -0.159 4.159 16 C 0.089 3.911 17 C -0.164 4.164 18 C -0.004 4.004 19 C -0.106 4.106 20 C 0.052 3.948 21 O -0.314 6.314 22 H 0.262 0.738 23 H 0.036 0.964 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 -7.327 0.812 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.212 1.212 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.073 0.927 9 C 0.062 3.938 10 H 0.055 0.945 11 C -0.140 4.140 12 C -0.107 4.107 13 C -0.127 4.127 14 C -0.103 4.103 15 C -0.178 4.178 16 C 0.044 3.956 17 C -0.164 4.164 18 C -0.004 4.004 19 C -0.143 4.143 20 C -0.023 4.023 21 O -0.229 6.229 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.715 -7.398 0.874 8.816 hybrid contribution 0.505 1.052 0.109 1.172 sum 5.220 -6.346 0.983 8.275 Atomic orbital electron populations 1.69951 1.05809 1.26803 1.49999 1.24941 0.94872 0.98928 0.95084 0.86651 0.79612 0.83020 0.78732 1.21217 1.20263 1.20202 1.20875 0.92750 0.89275 1.51163 0.92684 1.18375 0.91019 0.89438 0.95007 0.94541 1.22244 0.95199 0.99861 0.96707 1.20979 0.95980 0.96773 0.96966 1.20755 0.99434 0.96431 0.96039 1.20347 0.96186 0.95934 0.97866 1.19967 1.04944 1.03881 0.89018 1.19362 0.93543 0.95113 0.87557 1.20174 1.01362 0.99616 0.95294 1.20645 0.94231 0.94456 0.91037 1.21693 0.97206 1.02406 0.93022 1.23763 0.98264 0.88155 0.92142 1.86727 1.74549 1.38772 1.22845 0.92792 0.94501 0.89215 0.92890 0.91087 0.86307 0.86460 0.88621 0.89975 0.91116 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 11.93 55.43 0.66 -23.91 16 2 C 0.06 1.71 5.11 -17.82 -0.09 1.62 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.50 -13.48 8.55 -34.44 -0.29 -13.77 16 8 H 0.05 1.50 7.76 -52.49 -0.41 1.09 16 9 C 0.08 1.99 2.78 -91.88 -0.26 1.73 16 10 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 11 C -0.10 -2.36 6.20 -25.33 -0.16 -2.52 16 12 C -0.07 -1.40 6.76 -26.87 -0.18 -1.58 16 13 C -0.13 -2.60 6.15 -104.09 -0.64 -3.25 16 14 C -0.09 -1.53 10.04 -39.42 -0.40 -1.92 16 15 C -0.16 -2.84 10.08 -39.13 -0.39 -3.23 16 16 C 0.09 1.71 7.03 -39.00 -0.27 1.44 16 17 C -0.16 -3.39 6.26 -104.03 -0.65 -4.04 16 18 C 0.00 -0.08 5.41 -104.22 -0.56 -0.64 16 19 C -0.11 -1.85 7.12 -26.52 -0.19 -2.04 16 20 C 0.05 0.76 8.01 38.06 0.30 1.07 16 21 O -0.31 -5.59 11.11 -20.17 -0.22 -5.82 16 22 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.09 2.26 6.53 -51.93 -0.34 1.92 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 28 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 267.25 15.07 4.03 4.03 Total: -1.00 -28.67 267.25 -8.45 -37.12 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.11 Total: -0.09 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -3.78 Total: -27.15 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.66 Total: -23.91 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.22 Total: -5.82 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.67 -8.45 -37.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114593383.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.463 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds