Wall clock time and date at job start Mon Mar 30 2020 03:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09009 * 110.26773 * 300.70149 * 9 7 2 11 11 C 1.54330 * 110.30098 * 62.76316 * 9 7 2 12 12 C 1.54340 * 102.40237 * 92.53560 * 11 9 7 13 13 C 1.51341 * 105.17040 * 26.36371 * 12 11 9 14 14 C 1.38494 * 130.51831 * 162.92844 * 13 12 11 15 15 C 1.38409 * 120.39450 * 180.13098 * 14 13 12 16 16 C 1.39279 * 120.21502 * 359.93812 * 15 14 13 17 17 C 1.38772 * 118.83498 * 359.69828 * 16 15 14 18 18 C 1.38032 * 121.02089 * 0.52373 * 17 16 15 19 19 C 1.51648 * 107.05554 * 180.80042 * 17 16 15 20 20 C 1.54708 * 101.91157 * 15.41568 * 19 17 16 21 21 O 1.36136 * 129.89684 * 179.44803 * 16 15 14 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.08994 * 110.82736 * 210.76279 * 11 9 7 24 24 H 1.09004 * 110.82086 * 334.31280 * 11 9 7 25 25 H 1.08999 * 110.30504 * 145.28883 * 12 11 9 26 26 H 1.09005 * 110.30537 * 267.34652 * 12 11 9 27 27 H 1.08003 * 119.71801 * 0.04106 * 14 13 12 28 28 H 1.07997 * 119.85946 * 179.97438 * 15 14 13 29 29 H 1.09002 * 110.94461 * 133.57476 * 19 17 16 30 30 H 1.09006 * 110.93867 * 257.22567 * 19 17 16 31 31 H 1.09003 * 110.75042 * 93.05807 * 20 19 17 32 32 H 1.09004 * 110.75088 * 216.22025 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6104 -2.5653 0.8790 11 6 0.4091 -2.6313 -1.2872 12 6 1.3655 -3.3885 -2.2328 13 6 2.2834 -4.1743 -1.3216 14 6 3.1133 -5.2499 -1.5908 15 6 3.8721 -5.8185 -0.5824 16 6 3.8082 -5.3120 0.7134 17 6 2.9786 -4.2292 0.9686 18 6 2.2179 -3.6639 -0.0349 19 6 3.1291 -3.8904 2.4391 20 6 4.4189 -4.6584 2.8133 21 8 4.4510 -5.7184 1.8425 22 1 -0.4850 0.8401 0.0004 23 1 -0.4934 -3.2135 -1.1016 24 1 0.1620 -1.6495 -1.6911 25 1 0.8034 -4.0642 -2.8775 26 1 1.9398 -2.6835 -2.8339 27 1 3.1667 -5.6472 -2.5936 28 1 4.5161 -6.6572 -0.8019 29 1 3.2596 -2.8175 2.5804 30 1 2.2770 -4.2561 3.0123 31 1 5.2938 -4.0160 2.7129 32 1 4.3501 -5.0591 3.8247 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114593383.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:29 Heat of formation + Delta-G solvation = -31.830276 kcal Electronic energy + Delta-G solvation = -15869.949119 eV Core-core repulsion = 13373.445333 eV Total energy + Delta-G solvation = -2496.503786 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.01163 -39.67742 -36.15358 -34.05990 -33.49618 -30.68606 -29.06655 -28.66892 -25.90906 -23.95366 -22.85435 -21.74413 -20.91890 -18.36879 -17.85889 -17.61175 -16.95755 -16.54793 -15.86274 -15.33223 -14.92651 -14.52445 -14.10033 -13.98480 -13.70923 -13.38838 -12.91631 -12.85682 -12.68254 -12.56273 -12.30266 -12.15226 -11.96574 -11.75299 -11.61288 -11.15968 -10.95279 -10.46327 -9.42722 -8.81142 -8.13193 -6.26803 0.46916 0.57134 1.40166 1.40796 1.48922 2.38392 2.42229 2.87556 3.14247 3.59513 3.80996 3.92718 4.05462 4.16337 4.37474 4.48396 4.52769 4.56059 4.64551 4.74621 4.87956 4.94495 5.04001 5.18970 5.30002 5.40290 5.43425 5.45790 5.58683 5.68089 5.81068 5.92541 6.03455 6.28960 6.38050 6.79202 7.40036 8.92279 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.026550 B = 0.009632 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.373190 B = 2906.188272 C = 3541.323671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.019 3.981 3 Si 0.952 3.048 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.043 0.957 9 C 0.078 3.922 10 H -0.004 1.004 11 C -0.100 4.100 12 C -0.060 4.060 13 C -0.141 4.141 14 C -0.075 4.075 15 C -0.153 4.153 16 C 0.082 3.918 17 C -0.190 4.190 18 C -0.040 4.040 19 C -0.111 4.111 20 C 0.057 3.943 21 O -0.317 6.317 22 H 0.263 0.737 23 H 0.038 0.962 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.517 -8.630 0.286 10.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.061 0.939 9 C 0.059 3.941 10 H 0.014 0.986 11 C -0.138 4.138 12 C -0.097 4.097 13 C -0.142 4.142 14 C -0.093 4.093 15 C -0.171 4.171 16 C 0.037 3.963 17 C -0.191 4.191 18 C -0.040 4.040 19 C -0.148 4.148 20 C -0.017 4.017 21 O -0.232 6.232 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.177 0.823 28 H 0.170 0.830 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.474 -8.707 0.354 10.856 hybrid contribution -0.037 1.407 0.329 1.445 sum 6.437 -7.300 0.683 9.757 Atomic orbital electron populations 1.70065 1.07053 1.27527 1.50609 1.25659 0.95645 1.02006 0.94704 0.85701 0.78500 0.79196 0.78847 1.20610 1.19791 1.19679 1.21052 0.92267 0.90712 1.51228 0.93853 1.18239 0.91368 0.90338 0.94113 0.98550 1.22087 0.95917 0.99021 0.96804 1.20864 0.95449 0.96937 0.96470 1.20910 1.00519 0.97611 0.95123 1.20734 0.94419 0.94345 0.99784 1.20450 1.04410 1.04091 0.88188 1.19626 0.93296 0.94636 0.88697 1.20543 1.01570 1.00463 0.96484 1.20553 0.95544 0.94835 0.93058 1.21768 0.99195 1.02031 0.91827 1.23988 0.96930 0.87567 0.93203 1.86715 1.74142 1.39630 1.22737 0.92750 0.94360 0.91900 0.89670 0.91349 0.82343 0.83026 0.90123 0.89532 0.89888 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.30 11.93 21.45 0.26 -52.04 16 2 C 0.02 1.06 5.11 84.66 0.43 1.49 16 3 Si 0.95 43.37 29.54 68.60 2.03 45.40 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.51 -28.64 8.55 25.60 0.22 -28.42 16 8 H 0.04 2.45 7.76 -2.91 -0.02 2.42 16 9 C 0.08 4.06 2.78 -11.61 -0.03 4.03 16 10 H 0.00 -0.21 8.14 -2.38 -0.02 -0.22 16 11 C -0.10 -4.78 6.20 31.50 0.20 -4.59 16 12 C -0.06 -2.38 6.76 30.51 0.21 -2.17 16 13 C -0.14 -5.67 6.15 -19.52 -0.12 -5.79 16 14 C -0.08 -2.44 10.04 22.37 0.22 -2.22 16 15 C -0.15 -4.92 10.08 22.56 0.23 -4.69 16 16 C 0.08 3.01 7.03 22.65 0.16 3.17 16 17 C -0.19 -7.87 6.26 -19.48 -0.12 -7.99 16 18 C -0.04 -1.82 5.41 -19.61 -0.11 -1.93 16 19 C -0.11 -3.89 7.12 30.73 0.22 -3.67 16 20 C 0.06 1.56 8.01 72.56 0.58 2.14 16 21 O -0.32 -10.47 11.11 -95.10 -1.06 -11.53 16 22 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 23 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.06 3.30 6.53 -2.38 -0.02 3.29 16 25 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 26 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 27 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 28 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 29 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.14 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -63.47 267.25 4.42 -59.05 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.11 Total: 9.76 kcal Atomic # 6 Polarization: -52.72 SS G_CDS: 2.08 Total: -50.64 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.26 Total: -52.04 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -1.06 Total: -11.53 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -63.47 4.42 -59.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114593383.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.218 kcal (2) G-P(sol) polarization free energy of solvation -63.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds