Wall clock time and date at job start Mon Mar 30 2020 03:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47090 * 278.71847 * 4 3 2 6 6 O 1.42901 * 109.46850 * 179.97438 * 5 4 3 7 7 C 1.35671 * 116.99781 * 179.97438 * 6 5 4 8 8 C 1.39316 * 119.81769 * 0.25218 * 7 6 5 9 9 C 1.36441 * 120.18282 * 180.25688 * 8 7 6 10 10 C 1.40835 * 119.81132 * 359.46844 * 9 8 7 11 11 C 1.41216 * 120.17483 * 180.29815 * 10 9 8 12 12 H 1.07997 * 120.00438 * 24.54125 * 11 10 9 13 13 C 1.39897 * 119.99576 * 204.53835 * 11 10 9 14 14 N 1.30875 * 120.00270 * 17.93189 * 13 11 10 15 15 Si 1.86801 * 119.99742 * 197.93556 * 13 11 10 16 16 H 1.48504 * 109.47145 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47431 * 120.00060 * 15 13 11 18 18 H 1.48499 * 109.46661 * 240.00011 * 15 13 11 19 19 C 1.40823 * 119.64107 * 0.28458 * 10 9 8 20 20 C 1.36436 * 119.81465 * 359.97438 * 19 10 9 21 21 H 1.09004 * 109.47177 * 81.28093 * 1 2 3 22 22 H 1.09004 * 109.47258 * 201.28053 * 1 2 3 23 23 H 1.09006 * 109.46989 * 321.27773 * 1 2 3 24 24 H 1.08997 * 109.47117 * 158.72310 * 4 3 2 25 25 H 1.09004 * 109.47256 * 38.71508 * 4 3 2 26 26 H 1.08997 * 109.46763 * 60.00246 * 5 4 3 27 27 H 1.08994 * 109.46860 * 300.00181 * 5 4 3 28 28 H 1.07997 * 119.91004 * 0.03109 * 8 7 6 29 29 H 1.08001 * 120.09133 * 179.74824 * 9 8 7 30 30 H 0.97001 * 120.00621 * 179.97438 * 14 13 11 31 31 H 1.08002 * 120.09699 * 180.02562 * 19 10 9 32 32 H 1.08004 * 119.90886 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6282 -0.2164 1.4259 6 8 6.0572 -0.2157 1.4257 7 6 6.6733 -0.3979 2.6207 8 6 5.9110 -0.5796 3.7725 9 6 6.5228 -0.7582 4.9789 10 6 7.9290 -0.7699 5.0559 11 6 8.5702 -0.9605 6.2996 12 1 8.0575 -1.4760 7.0982 13 6 9.8697 -0.4815 6.4972 14 7 10.3613 0.4275 5.6941 15 14 10.9033 -1.1396 7.9072 16 1 10.1225 -2.1517 8.6630 17 1 12.1358 -1.7671 7.3667 18 1 11.2729 -0.0225 8.8132 19 6 8.6921 -0.5907 3.8860 20 6 8.0647 -0.4079 2.6883 21 1 -0.3634 0.1558 -1.0158 22 1 -0.3634 -0.9576 0.3730 23 1 -0.3633 0.8018 0.6429 24 1 4.4805 0.9598 -0.3729 25 1 4.4821 -0.7997 -0.6428 26 1 4.2657 -1.1743 1.7988 27 1 4.2641 0.5851 2.0686 28 1 4.8328 -0.5753 3.7110 29 1 5.9304 -0.8949 5.8716 30 1 11.2622 0.7598 5.8313 31 1 9.7709 -0.5987 3.9365 32 1 8.6485 -0.2707 1.7900 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133193426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:23 Heat of formation + Delta-G solvation = 14.108059 kcal Electronic energy + Delta-G solvation = -14429.548639 eV Core-core repulsion = 11935.036889 eV Total energy + Delta-G solvation = -2494.511751 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.83044 -36.56750 -34.81118 -33.33438 -31.73260 -29.70344 -28.99049 -27.50016 -24.82456 -23.42323 -20.76943 -20.48575 -17.44140 -17.21965 -16.09351 -15.66136 -15.19137 -14.73585 -13.94862 -13.90392 -13.76495 -13.50573 -12.98774 -12.92203 -12.60430 -12.16876 -11.95346 -11.47497 -11.17703 -11.07797 -10.81875 -10.60615 -9.97781 -9.83334 -9.81332 -9.68124 -9.33053 -9.01310 -7.62831 -7.02222 -6.71425 -4.24526 2.58140 2.67429 2.77850 2.96810 3.09628 3.14884 3.21374 3.90175 3.96445 4.53841 4.62987 5.18161 5.27306 5.39551 5.42165 5.50345 5.55400 5.67921 5.85821 5.97043 6.02775 6.11258 6.24824 6.73926 6.99467 7.12597 7.19884 7.47681 7.56965 7.59124 7.81320 8.01823 8.21652 8.45793 8.66262 8.91128 8.99860 10.22996 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.066703 B = 0.004197 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.668526 B = 6670.156682 C = 6994.627970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.198 4.198 3 C -0.176 4.176 4 C -0.005 4.005 5 C 0.074 3.926 6 O -0.329 6.329 7 C -0.008 4.008 8 C -0.167 4.167 9 C -0.198 4.198 10 C 0.088 3.912 11 C -0.463 4.463 12 H 0.077 0.923 13 C 0.075 3.925 14 N -0.799 5.799 15 Si 0.907 3.093 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.134 4.134 20 C -0.119 4.119 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.279 0.721 31 H 0.126 0.874 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.945 -0.663 -6.966 12.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.198 4.198 3 C -0.176 4.176 4 C -0.042 4.042 5 C -0.002 4.002 6 O -0.245 6.245 7 C -0.051 4.051 8 C -0.186 4.186 9 C -0.218 4.218 10 C 0.086 3.914 11 C -0.493 4.493 12 H 0.095 0.905 13 C -0.142 4.142 14 N -0.425 5.425 15 Si 0.731 3.269 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.201 1.201 19 C -0.154 4.154 20 C -0.138 4.138 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.144 0.856 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.647 -0.488 -7.167 12.027 hybrid contribution 0.294 -0.166 0.842 0.907 sum -9.353 -0.654 -6.325 11.309 Atomic orbital electron populations 1.18831 0.84644 1.03023 1.02835 1.22368 0.93885 1.02399 1.01130 1.22070 0.93276 1.00816 1.01470 1.18451 0.83946 1.04237 0.97527 1.22274 0.81493 1.00975 0.95460 1.85758 1.18202 1.90004 1.30532 1.18570 0.91824 1.11570 0.83177 1.20432 0.97238 1.07441 0.93447 1.20576 0.94794 1.11005 0.95398 1.17602 0.90662 0.89856 0.93310 1.19496 0.98330 1.32887 0.98613 0.90515 1.25882 0.98077 0.92934 0.97315 1.69840 1.16464 1.20448 1.35730 0.86289 0.79832 0.79734 0.81010 1.18484 1.19743 1.20092 1.20974 1.00050 1.03916 0.90418 1.19836 0.90464 1.05548 0.97967 0.90347 0.90260 0.90248 0.88750 0.88769 0.92848 0.92820 0.88800 0.88728 0.90980 0.85639 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.30 10.32 34.37 0.35 0.05 16 2 C -0.20 -2.47 14.13 -37.12 -0.52 -3.00 16 3 C -0.18 -2.43 13.34 -37.12 -0.50 -2.92 16 4 C -0.01 -0.07 6.07 -29.52 -0.18 -0.25 16 5 C 0.07 1.24 4.69 37.16 0.17 1.42 16 6 O -0.33 -6.81 10.12 -18.71 -0.19 -7.00 16 7 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 8 C -0.17 -3.88 8.96 -39.83 -0.36 -4.24 16 9 C -0.20 -4.96 9.74 -39.25 -0.38 -5.34 16 10 C 0.09 2.38 5.57 -106.81 -0.60 1.78 16 11 C -0.46 -12.41 9.04 -37.83 -0.34 -12.75 16 12 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 13 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 14 N -0.80 -20.79 10.96 55.55 0.61 -20.18 16 15 Si 0.91 18.77 29.60 -169.99 -5.03 13.74 16 16 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 19 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 20 C -0.12 -2.92 9.92 -39.83 -0.40 -3.32 16 21 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.05 0.88 7.64 -51.93 -0.40 0.49 16 27 H 0.05 0.90 7.66 -51.93 -0.40 0.50 16 28 H 0.09 1.92 6.27 -52.49 -0.33 1.60 16 29 H 0.09 2.22 8.06 -52.49 -0.42 1.79 16 30 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 31 H 0.13 3.37 6.16 -52.49 -0.32 3.05 16 32 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 LS Contribution 285.04 15.07 4.30 4.30 Total: -1.00 -29.01 285.04 -7.70 -36.71 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.96 Total: 3.54 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: -3.43 Total: -31.10 kcal Atomic # 7 Polarization: -20.79 SS G_CDS: 0.61 Total: -20.18 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.19 Total: -7.00 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.01 -7.70 -36.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133193426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.816 kcal (2) G-P(sol) polarization free energy of solvation -29.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds