Wall clock time and date at job start Mon Mar 30 2020 03:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47090 * 278.71847 * 4 3 2 6 6 O 1.42901 * 109.46850 * 179.97438 * 5 4 3 7 7 C 1.35671 * 116.99781 * 179.97438 * 6 5 4 8 8 C 1.39316 * 119.81769 * 0.25218 * 7 6 5 9 9 C 1.36441 * 120.18282 * 180.25688 * 8 7 6 10 10 C 1.40835 * 119.81132 * 359.46844 * 9 8 7 11 11 C 1.41216 * 120.17483 * 180.29815 * 10 9 8 12 12 H 1.07997 * 120.00438 * 24.54125 * 11 10 9 13 13 C 1.39897 * 119.99576 * 204.53835 * 11 10 9 14 14 N 1.30875 * 120.00270 * 17.93189 * 13 11 10 15 15 Si 1.86801 * 119.99742 * 197.93556 * 13 11 10 16 16 H 1.48504 * 109.47145 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47431 * 120.00060 * 15 13 11 18 18 H 1.48499 * 109.46661 * 240.00011 * 15 13 11 19 19 C 1.40823 * 119.64107 * 0.28458 * 10 9 8 20 20 C 1.36436 * 119.81465 * 359.97438 * 19 10 9 21 21 H 1.09004 * 109.47177 * 81.28093 * 1 2 3 22 22 H 1.09004 * 109.47258 * 201.28053 * 1 2 3 23 23 H 1.09006 * 109.46989 * 321.27773 * 1 2 3 24 24 H 1.08997 * 109.47117 * 158.72310 * 4 3 2 25 25 H 1.09004 * 109.47256 * 38.71508 * 4 3 2 26 26 H 1.08997 * 109.46763 * 60.00246 * 5 4 3 27 27 H 1.08994 * 109.46860 * 300.00181 * 5 4 3 28 28 H 1.07997 * 119.91004 * 0.03109 * 8 7 6 29 29 H 1.08001 * 120.09133 * 179.74824 * 9 8 7 30 30 H 0.97001 * 120.00621 * 179.97438 * 14 13 11 31 31 H 1.08002 * 120.09699 * 180.02562 * 19 10 9 32 32 H 1.08004 * 119.90886 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6282 -0.2164 1.4259 6 8 6.0572 -0.2157 1.4257 7 6 6.6733 -0.3979 2.6207 8 6 5.9110 -0.5796 3.7725 9 6 6.5228 -0.7582 4.9789 10 6 7.9290 -0.7699 5.0559 11 6 8.5702 -0.9605 6.2996 12 1 8.0575 -1.4760 7.0982 13 6 9.8697 -0.4815 6.4972 14 7 10.3613 0.4275 5.6941 15 14 10.9033 -1.1396 7.9072 16 1 10.1225 -2.1517 8.6630 17 1 12.1358 -1.7671 7.3667 18 1 11.2729 -0.0225 8.8132 19 6 8.6921 -0.5907 3.8860 20 6 8.0647 -0.4079 2.6883 21 1 -0.3634 0.1558 -1.0158 22 1 -0.3634 -0.9576 0.3730 23 1 -0.3633 0.8018 0.6429 24 1 4.4805 0.9598 -0.3729 25 1 4.4821 -0.7997 -0.6428 26 1 4.2657 -1.1743 1.7988 27 1 4.2641 0.5851 2.0686 28 1 4.8328 -0.5753 3.7110 29 1 5.9304 -0.8949 5.8716 30 1 11.2622 0.7598 5.8313 31 1 9.7709 -0.5987 3.9365 32 1 8.6485 -0.2707 1.7900 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133193426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:23 Heat of formation + Delta-G solvation = -0.206810 kcal Electronic energy + Delta-G solvation = -14430.169379 eV Core-core repulsion = 11935.036889 eV Total energy + Delta-G solvation = -2495.132490 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.57197 -38.33520 -35.92546 -35.15166 -32.84095 -31.55318 -30.86789 -28.49414 -26.67884 -24.81133 -22.65416 -22.28158 -19.27186 -18.89470 -17.27317 -17.03749 -16.92426 -16.39091 -15.74755 -14.89411 -14.86779 -14.68519 -14.30665 -14.09451 -14.04929 -14.02878 -13.68867 -13.15338 -12.79688 -12.70820 -12.50807 -12.33123 -11.72096 -11.57776 -11.22278 -10.89411 -10.78227 -10.64601 -9.57550 -8.94720 -8.60356 -6.23931 0.93361 1.01152 1.40499 1.51060 1.55834 1.56128 1.71133 2.23282 2.57916 2.71823 3.46721 3.68811 4.00517 4.07197 4.24828 4.35821 4.36424 4.71406 4.75889 4.80133 4.84417 4.90876 4.92934 5.06154 5.09658 5.20811 5.27869 5.56520 5.63965 5.87545 6.04671 6.25317 6.54895 6.63778 6.77452 6.94214 7.07208 8.36557 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.066703 B = 0.004197 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.668526 B = 6670.156682 C = 6994.627970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.186 4.186 3 C -0.222 4.222 4 C 0.005 3.995 5 C 0.070 3.930 6 O -0.333 6.333 7 C -0.003 4.003 8 C -0.166 4.166 9 C -0.210 4.210 10 C 0.056 3.944 11 C -0.499 4.499 12 H 0.076 0.924 13 C 0.034 3.966 14 N -0.830 5.830 15 Si 0.983 3.017 16 H -0.259 1.259 17 H -0.264 1.264 18 H -0.267 1.267 19 C -0.153 4.153 20 C -0.130 4.130 21 H 0.099 0.901 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.123 0.877 29 H 0.105 0.895 30 H 0.288 0.712 31 H 0.113 0.887 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.195 -0.831 -7.196 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.186 4.186 3 C -0.223 4.223 4 C -0.031 4.031 5 C -0.006 4.006 6 O -0.249 6.249 7 C -0.047 4.047 8 C -0.185 4.185 9 C -0.230 4.230 10 C 0.054 3.946 11 C -0.529 4.529 12 H 0.094 0.906 13 C -0.180 4.180 14 N -0.457 5.457 15 Si 0.804 3.196 16 H -0.182 1.182 17 H -0.189 1.189 18 H -0.191 1.191 19 C -0.172 4.172 20 C -0.148 4.148 21 H 0.117 0.883 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.140 0.860 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.920 -0.651 -7.418 13.218 hybrid contribution 0.506 -0.077 0.790 0.941 sum -10.415 -0.728 -6.628 12.367 Atomic orbital electron populations 1.19143 0.81816 1.04392 1.04569 1.23410 0.95183 1.00810 0.99192 1.22232 0.93761 1.02692 1.03576 1.18314 0.84284 1.05049 0.95446 1.22527 0.79101 1.01074 0.97867 1.85753 1.20587 1.89570 1.29004 1.18666 0.91786 1.09958 0.84265 1.20701 0.98765 1.06347 0.92700 1.20802 0.94396 1.11145 0.96633 1.17959 0.91821 0.90940 0.93859 1.19744 0.99895 1.34380 0.98835 0.90621 1.26750 0.98657 0.92538 1.00103 1.69887 1.17219 1.21134 1.37425 0.85144 0.77876 0.79105 0.77464 1.18226 1.18879 1.19144 1.20921 0.99571 1.05512 0.91210 1.20029 0.91471 1.05351 0.97975 0.88308 0.88761 0.88816 0.88023 0.87857 0.92593 0.92866 0.85961 0.87734 0.90127 0.86958 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.56 10.32 70.18 0.72 0.16 16 2 C -0.19 -4.24 14.13 31.12 0.44 -3.80 16 3 C -0.22 -5.79 13.34 31.12 0.42 -5.37 16 4 C 0.01 0.14 6.07 28.79 0.17 0.32 16 5 C 0.07 2.24 4.69 71.98 0.34 2.58 16 6 O -0.33 -13.42 10.12 -89.88 -0.91 -14.33 16 7 C 0.00 -0.14 6.71 22.79 0.15 0.01 16 8 C -0.17 -7.63 8.96 22.11 0.20 -7.43 16 9 C -0.21 -10.60 9.74 22.49 0.22 -10.38 16 10 C 0.06 3.12 5.57 -21.28 -0.12 3.00 16 11 C -0.50 -27.32 9.04 23.40 0.21 -27.11 16 12 H 0.08 3.99 7.91 -2.91 -0.02 3.97 16 13 C 0.03 1.71 5.13 85.24 0.44 2.15 16 14 N -0.83 -43.94 10.96 21.82 0.24 -43.71 16 15 Si 0.98 38.54 29.60 68.60 2.03 40.57 16 16 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 18 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 19 C -0.15 -8.27 8.64 22.48 0.19 -8.07 16 20 C -0.13 -6.39 9.92 22.11 0.22 -6.18 16 21 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 22 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 23 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.06 1.77 7.64 -2.39 -0.02 1.75 16 27 H 0.05 1.71 7.66 -2.39 -0.02 1.69 16 28 H 0.12 4.80 6.27 -2.91 -0.02 4.79 16 29 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 30 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 31 H 0.11 6.27 6.16 -2.91 -0.02 6.25 16 32 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -62.42 285.04 6.08 -56.35 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 1.11 Total: 21.24 kcal Atomic # 6 Polarization: -63.73 SS G_CDS: 3.61 Total: -60.12 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.24 Total: -43.71 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.91 Total: -14.33 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -62.42 6.08 -56.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133193426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.139 kcal (2) G-P(sol) polarization free energy of solvation -62.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds