Wall clock time and date at job start Mon Mar 30 2020 03:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86804 * 119.99525 * 2 1 4 4 H 1.48506 * 109.47237 * 270.00166 * 3 2 1 5 5 H 1.48495 * 109.47385 * 30.00263 * 3 2 1 6 6 H 1.48499 * 109.46819 * 150.00507 * 3 2 1 7 7 C 1.39894 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08011 * 120.00116 * 164.01259 * 7 2 1 9 9 C 1.41042 * 120.00331 * 344.01032 * 7 2 1 10 10 C 1.40655 * 120.27014 * 333.62351 * 9 7 2 11 11 C 1.37995 * 119.77014 * 179.72416 * 10 9 7 12 12 N 1.40261 * 119.83446 * 180.25900 * 11 10 9 13 13 C 1.34701 * 126.84370 * 179.71017 * 12 11 10 14 14 N 1.30870 * 108.03776 * 179.82892 * 13 12 11 15 15 C 1.33246 * 109.84221 * 0.44500 * 14 13 12 16 16 N 1.30766 * 108.99414 * 359.72102 * 15 14 13 17 17 C 1.39522 * 120.33531 * 0.27344 * 11 10 9 18 18 C 1.38033 * 120.56072 * 0.02562 * 17 11 10 19 19 C 1.38758 * 120.21711 * 359.97438 * 18 17 11 20 20 N 1.38753 * 120.16840 * 180.02562 * 19 18 17 21 21 H 0.96997 * 120.00224 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.11582 * 359.97438 * 10 9 7 23 23 H 1.08000 * 125.98375 * 359.96338 * 13 12 11 24 24 H 1.07998 * 125.50725 * 179.72719 * 15 14 13 25 25 H 1.08002 * 119.72073 * 179.97438 * 17 11 10 26 26 H 1.07994 * 119.89035 * 179.97438 * 18 17 11 27 27 H 0.96993 * 120.00187 * 359.97438 * 20 19 18 28 28 H 0.97003 * 119.99802 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0466 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4403 0.6999 7 6 2.0084 -1.2115 -0.0005 8 1 3.0572 -1.2295 -0.2582 9 6 1.3442 -2.4095 0.3354 10 6 0.2148 -2.3831 1.1732 11 6 -0.4306 -3.5609 1.4907 12 7 -1.5602 -3.5355 2.3216 13 6 -2.2972 -4.5921 2.7154 14 7 -3.2589 -4.1509 3.4855 15 6 -3.1758 -2.8259 3.5988 16 7 -2.1519 -2.4027 2.9042 17 6 0.0351 -4.7768 0.9894 18 6 1.1459 -4.8193 0.1710 19 6 1.8125 -3.6491 -0.1629 20 7 2.9286 -3.6929 -0.9861 21 1 -0.4850 0.8400 0.0004 22 1 -0.1486 -1.4440 1.5636 23 1 -2.1234 -5.6231 2.4448 24 1 -3.8458 -2.2021 4.1718 25 1 -0.4773 -5.6926 1.2445 26 1 1.4973 -5.7665 -0.2106 27 1 3.2450 -4.5431 -1.3293 28 1 3.3925 -2.8733 -1.2182 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166389822.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:50 Heat of formation + Delta-G solvation = 95.162587 kcal Electronic energy + Delta-G solvation = -15185.832821 eV Core-core repulsion = 12623.588266 eV Total energy + Delta-G solvation = -2562.244555 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.03701 -39.74618 -36.07453 -35.45661 -33.04701 -32.25291 -31.42033 -28.80003 -27.01319 -24.19412 -23.75425 -21.98944 -21.60931 -19.58733 -18.00541 -17.54137 -17.35624 -16.60007 -16.52771 -16.06209 -15.02411 -14.72957 -14.53319 -14.15894 -13.89755 -13.39040 -13.12793 -13.05663 -12.71206 -12.28664 -12.14557 -12.05078 -11.39766 -11.02781 -10.95519 -10.78039 -10.32632 -9.40471 -8.61239 -8.00333 -6.13864 0.29409 0.97870 1.38589 1.43495 1.51846 1.56882 1.61823 2.03086 2.21807 2.79565 3.46914 3.56723 3.71988 3.86947 4.16079 4.49789 4.58128 5.00329 5.06342 5.15247 5.28942 5.53342 5.61102 5.65756 5.82199 6.00467 6.05237 6.31832 6.60523 6.84789 6.94029 7.15210 7.20614 7.49405 8.40758 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.009686 C = 0.007038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.181392 B = 2890.211710 C = 3977.282067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.030 3.970 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.489 4.489 8 H 0.085 0.915 9 C 0.037 3.963 10 C -0.156 4.156 11 C 0.076 3.924 12 N -0.307 5.307 13 C 0.243 3.757 14 N -0.565 5.565 15 C 0.182 3.818 16 N -0.361 5.361 17 C -0.179 4.179 18 C -0.168 4.168 19 C 0.125 3.875 20 N -0.866 5.866 21 H 0.280 0.720 22 H 0.105 0.895 23 H 0.256 0.744 24 H 0.248 0.752 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.399 0.601 28 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 -6.113 0.542 6.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.183 4.183 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.519 4.519 8 H 0.103 0.897 9 C 0.032 3.968 10 C -0.179 4.179 11 C -0.017 4.017 12 N -0.090 5.090 13 C -0.051 4.051 14 N -0.294 5.294 15 C -0.120 4.120 16 N -0.189 5.189 17 C -0.202 4.202 18 C -0.192 4.192 19 C 0.020 3.980 20 N -0.407 5.407 21 H 0.091 0.909 22 H 0.123 0.877 23 H 0.271 0.729 24 H 0.264 0.736 25 H 0.158 0.842 26 H 0.159 0.841 27 H 0.228 0.772 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.176 -5.400 0.648 5.564 hybrid contribution 0.401 0.962 -0.293 1.083 sum 1.577 -4.437 0.354 4.723 Atomic orbital electron populations 1.69929 1.08979 1.29852 1.37009 1.26654 0.95312 1.04375 0.91991 0.85293 0.79047 0.76602 0.79297 1.18596 1.20465 1.18044 1.19414 0.97501 0.91610 1.43385 0.89675 1.17400 0.93795 0.92415 0.93219 1.20760 0.99799 0.95749 1.01611 1.17657 0.88636 0.96454 0.98941 1.47760 1.21544 1.05105 1.34566 1.26777 0.87930 0.97032 0.93325 1.70558 1.24974 1.11099 1.22721 1.26689 0.95758 0.91452 0.98105 1.78195 1.13710 1.10030 1.16918 1.20220 1.00776 0.94086 1.05081 1.20197 0.98306 0.96433 1.04282 1.18255 0.91471 0.93545 0.94699 1.41848 1.31394 1.11213 1.56248 0.90935 0.87745 0.72860 0.73649 0.84164 0.84086 0.77203 0.77587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.33 10.97 21.82 0.24 -45.09 15 2 C 0.03 1.53 5.16 85.23 0.44 1.97 15 3 Si 0.98 38.71 29.59 68.60 2.03 40.74 15 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 5 H -0.28 -11.09 7.11 99.48 0.71 -10.39 15 6 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 7 C -0.49 -24.90 8.49 23.36 0.20 -24.70 15 8 H 0.09 3.98 6.70 -2.91 -0.02 3.96 15 9 C 0.04 1.91 5.57 -21.18 -0.12 1.79 15 10 C -0.16 -8.34 8.29 22.80 0.19 -8.16 15 11 C 0.08 3.50 6.69 38.04 0.25 3.75 15 12 N -0.31 -13.27 3.82 -191.32 -0.73 -14.00 15 13 C 0.24 8.35 11.97 180.26 2.16 10.51 15 14 N -0.57 -20.00 11.19 -203.73 -2.28 -22.28 15 15 C 0.18 6.58 13.03 180.75 2.35 8.94 15 16 N -0.36 -16.26 12.02 -61.21 -0.74 -16.99 15 17 C -0.18 -6.82 9.47 22.53 0.21 -6.61 15 18 C -0.17 -6.23 9.86 22.35 0.22 -6.01 15 19 C 0.12 5.31 6.79 38.99 0.26 5.58 15 20 N -0.87 -29.45 8.98 -50.36 -0.45 -29.91 15 21 H 0.28 14.30 8.30 -92.71 -0.77 13.53 15 22 H 0.10 6.23 5.88 -2.91 -0.02 6.22 15 23 H 0.26 5.95 7.08 -2.91 -0.02 5.93 15 24 H 0.25 6.48 8.06 -2.91 -0.02 6.46 15 25 H 0.14 4.05 6.77 -2.91 -0.02 4.03 15 26 H 0.14 4.07 8.06 -2.91 -0.02 4.05 15 27 H 0.40 10.46 8.83 -92.71 -0.82 9.64 15 28 H 0.40 13.50 7.05 -92.71 -0.65 12.84 15 Total: -1.00 -66.44 249.92 4.00 -62.44 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.24 Total: 38.03 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 6.18 Total: -12.95 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -3.96 Total: -128.27 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -66.44 4.00 -62.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166389822.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.600 kcal (2) G-P(sol) polarization free energy of solvation -66.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds