Wall clock time and date at job start Mon Mar 30 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38311 * 120.86151 * 2 1 4 4 C 1.38385 * 119.33257 * 180.29948 * 3 2 1 5 5 N 1.31983 * 121.13875 * 359.71839 * 4 3 2 6 6 C 1.31618 * 121.90165 * 0.02562 * 5 4 3 7 7 C 1.39860 * 120.52775 * 0.02562 * 6 5 4 8 8 C 1.47419 * 120.58498 * 179.97438 * 7 6 5 9 9 N 1.32446 * 126.27312 * 179.97438 * 8 7 6 10 10 N 1.28521 * 110.13216 * 179.97438 * 9 8 7 11 11 C 1.33276 * 109.75473 * 0.02562 * 10 9 8 12 12 C 1.39746 * 126.53327 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00216 * 180.02562 * 12 11 10 14 14 C 1.40284 * 119.99919 * 359.73826 * 12 11 10 15 15 N 1.30664 * 120.00176 * 0.28271 * 14 12 11 16 16 Si 1.86803 * 119.99882 * 180.28103 * 14 12 11 17 17 H 1.48496 * 109.47491 * 60.00015 * 16 14 12 18 18 H 1.48504 * 109.47032 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46993 * 300.00121 * 16 14 12 20 20 N 1.36928 * 126.27987 * 0.28867 * 8 7 6 21 21 H 0.96999 * 127.13329 * 0.02562 * 20 8 7 22 22 H 1.09001 * 109.47132 * 270.22242 * 1 2 3 23 23 H 1.08994 * 109.47422 * 30.22566 * 1 2 3 24 24 H 1.09000 * 109.46470 * 150.23078 * 1 2 3 25 25 H 1.07998 * 120.33570 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.42497 * 179.74131 * 4 3 2 27 27 H 1.08002 * 119.73320 * 180.02562 * 6 5 4 28 28 H 0.97005 * 120.00023 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2166 1.1873 0.0000 4 6 3.5999 1.1504 -0.0063 5 7 4.2520 0.0029 -0.0068 6 6 3.6243 -1.1539 -0.0018 7 6 2.2265 -1.2037 0.0037 8 6 1.5221 -2.4987 0.0087 9 7 0.2097 -2.6768 0.0146 10 7 -0.0664 -3.9320 0.0172 11 6 1.0619 -4.6414 0.0137 12 6 1.1685 -6.0348 0.0144 13 1 2.1423 -6.5019 0.0117 14 6 0.0107 -6.8268 0.0249 15 7 -1.1675 -6.2617 0.0282 16 14 0.1532 -8.6893 0.0338 17 1 0.8955 -9.1232 1.2446 18 1 -1.2050 -9.2897 0.0437 19 1 0.8824 -9.1358 -1.1803 20 7 2.1046 -3.7379 0.0142 21 1 3.0535 -3.9388 0.0160 22 1 -0.3633 0.0040 1.0277 23 1 -0.3634 0.8879 -0.5173 24 1 -0.3632 -0.8921 -0.5103 25 1 1.6962 2.1336 -0.0004 26 1 4.1554 2.0766 -0.0106 27 1 4.1930 -2.0720 -0.0019 28 1 -1.9681 -6.8094 0.0351 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168220375.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:19 Heat of formation + Delta-G solvation = 92.709854 kcal Electronic energy + Delta-G solvation = -15004.235855 eV Core-core repulsion = 12441.884942 eV Total energy + Delta-G solvation = -2562.350913 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85430 -39.45902 -34.05616 -33.47908 -32.31720 -31.17670 -28.77833 -27.28927 -25.86746 -23.14274 -21.83423 -20.86039 -20.08103 -17.72059 -16.53939 -15.92727 -15.59076 -15.21017 -14.61457 -14.37866 -13.46252 -13.38444 -13.21254 -12.33783 -12.24131 -12.16731 -11.64830 -11.38141 -11.33788 -11.10789 -10.51568 -9.81721 -9.57528 -9.28315 -9.24012 -9.05152 -8.96529 -8.54267 -7.43519 -6.80092 -4.73160 1.25389 1.62050 2.89384 2.99366 3.01643 3.40264 3.76705 4.11789 4.22812 4.53176 4.72879 5.09159 5.20628 5.21850 5.30641 5.49030 5.80735 5.94255 6.08507 6.26678 6.32269 6.58808 6.70219 6.93107 6.98151 7.03221 7.22526 7.34464 7.99105 8.04177 8.29717 8.55724 8.84719 10.11672 10.50459 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.056683 B = 0.006275 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.855350 B = 4461.063153 C = 4939.769734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.032 4.032 3 C -0.167 4.167 4 C 0.067 3.933 5 N -0.484 5.484 6 C 0.083 3.917 7 C -0.009 4.009 8 C 0.081 3.919 9 N -0.255 5.255 10 N -0.330 5.330 11 C 0.345 3.655 12 C -0.442 4.442 13 H 0.087 0.913 14 C 0.077 3.923 15 N -0.728 5.728 16 Si 0.924 3.076 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.264 1.264 20 N -0.639 5.639 21 H 0.405 0.595 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.114 0.886 25 H 0.130 0.870 26 H 0.148 0.852 27 H 0.145 0.855 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.815 5.947 -0.090 7.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.042 4.042 3 C -0.187 4.187 4 C -0.090 4.090 5 N -0.193 5.193 6 C -0.077 4.077 7 C -0.015 4.015 8 C -0.177 4.177 9 N -0.102 5.102 10 N -0.181 5.181 11 C 0.104 3.896 12 C -0.481 4.481 13 H 0.105 0.895 14 C -0.150 4.150 15 N -0.350 5.350 16 Si 0.747 3.253 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.188 1.188 20 N -0.259 5.259 21 H 0.242 0.758 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.132 0.868 25 H 0.148 0.852 26 H 0.166 0.834 27 H 0.162 0.838 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.793 6.269 -0.084 7.327 hybrid contribution 1.108 -1.248 0.053 1.669 sum 4.900 5.021 -0.031 7.016 Atomic orbital electron populations 1.21140 0.89435 1.04486 1.03112 1.20368 0.97472 0.91148 0.95254 1.21888 0.95341 0.98236 1.03191 1.22551 0.91689 0.95906 0.98900 1.67475 1.41013 0.98296 1.12469 1.22597 0.90538 0.95865 0.98746 1.18585 0.93039 0.90050 0.99791 1.21518 0.91261 0.84702 1.20206 1.74218 1.09312 1.13886 1.12833 1.75681 1.19767 0.94148 1.28490 1.21516 0.81747 0.92296 0.93998 1.18235 0.94883 0.86639 1.48341 0.89474 1.25865 0.94396 1.01548 0.93206 1.69917 0.98498 1.37963 1.28643 0.86120 0.78604 0.80654 0.79898 1.18839 1.19939 1.18831 1.43967 1.09245 1.05804 1.66927 0.75835 0.91068 0.92766 0.86796 0.85175 0.83444 0.83764 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.28 36.01 0.33 -1.80 15 2 C -0.03 -0.57 5.96 -103.84 -0.62 -1.19 15 3 C -0.17 -2.42 9.80 -39.50 -0.39 -2.80 15 4 C 0.07 0.97 11.17 -17.43 -0.19 0.77 15 5 N -0.48 -8.13 10.34 -12.82 -0.13 -8.27 15 6 C 0.08 1.46 10.89 -17.04 -0.19 1.27 15 7 C -0.01 -0.18 5.89 -104.80 -0.62 -0.80 15 8 C 0.08 1.86 7.77 -153.56 -1.19 0.66 15 9 N -0.26 -6.61 8.91 32.56 0.29 -6.32 15 10 N -0.33 -9.40 10.49 31.21 0.33 -9.07 15 11 C 0.35 9.12 7.71 -155.04 -1.20 7.93 15 12 C -0.44 -11.11 9.45 -38.25 -0.36 -11.47 15 13 H 0.09 1.97 7.85 -52.49 -0.41 1.55 15 14 C 0.08 1.87 5.50 -17.28 -0.10 1.77 15 15 N -0.73 -19.02 11.93 55.57 0.66 -18.36 15 16 Si 0.92 17.65 29.56 -169.99 -5.03 12.63 15 17 H -0.26 -4.95 7.11 56.52 0.40 -4.54 15 18 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 19 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 20 N -0.64 -14.42 6.23 -9.78 -0.06 -14.48 15 21 H 0.41 7.56 8.21 -40.82 -0.34 7.22 15 22 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 23 H 0.05 0.76 8.10 -51.93 -0.42 0.34 15 24 H 0.11 2.32 5.33 -51.93 -0.28 2.05 15 25 H 0.13 1.47 8.06 -52.49 -0.42 1.04 15 26 H 0.15 1.62 8.06 -52.48 -0.42 1.20 15 27 H 0.15 2.26 7.28 -52.49 -0.38 1.88 15 28 H 0.28 6.67 8.29 -40.82 -0.34 6.33 15 LS Contribution 251.54 15.07 3.79 3.79 Total: -1.00 -30.29 251.54 -6.89 -37.18 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -2.23 Total: 8.56 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -4.51 Total: -5.65 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 1.09 Total: -56.50 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.29 -6.89 -37.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168220375.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.892 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds