Wall clock time and date at job start Mon Mar 30 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38311 * 120.86151 * 2 1 4 4 C 1.38385 * 119.33257 * 180.29948 * 3 2 1 5 5 N 1.31983 * 121.13875 * 359.71839 * 4 3 2 6 6 C 1.31618 * 121.90165 * 0.02562 * 5 4 3 7 7 C 1.39860 * 120.52775 * 0.02562 * 6 5 4 8 8 C 1.47419 * 120.58498 * 179.97438 * 7 6 5 9 9 N 1.32446 * 126.27312 * 179.97438 * 8 7 6 10 10 N 1.28521 * 110.13216 * 179.97438 * 9 8 7 11 11 C 1.33276 * 109.75473 * 0.02562 * 10 9 8 12 12 C 1.39746 * 126.53327 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00216 * 180.02562 * 12 11 10 14 14 C 1.40284 * 119.99919 * 359.73826 * 12 11 10 15 15 N 1.30664 * 120.00176 * 0.28271 * 14 12 11 16 16 Si 1.86803 * 119.99882 * 180.28103 * 14 12 11 17 17 H 1.48496 * 109.47491 * 60.00015 * 16 14 12 18 18 H 1.48504 * 109.47032 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46993 * 300.00121 * 16 14 12 20 20 N 1.36928 * 126.27987 * 0.28867 * 8 7 6 21 21 H 0.96999 * 127.13329 * 0.02562 * 20 8 7 22 22 H 1.09001 * 109.47132 * 270.22242 * 1 2 3 23 23 H 1.08994 * 109.47422 * 30.22566 * 1 2 3 24 24 H 1.09000 * 109.46470 * 150.23078 * 1 2 3 25 25 H 1.07998 * 120.33570 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.42497 * 179.74131 * 4 3 2 27 27 H 1.08002 * 119.73320 * 180.02562 * 6 5 4 28 28 H 0.97005 * 120.00023 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2166 1.1873 0.0000 4 6 3.5999 1.1504 -0.0063 5 7 4.2520 0.0029 -0.0068 6 6 3.6243 -1.1539 -0.0018 7 6 2.2265 -1.2037 0.0037 8 6 1.5221 -2.4987 0.0087 9 7 0.2097 -2.6768 0.0146 10 7 -0.0664 -3.9320 0.0172 11 6 1.0619 -4.6414 0.0137 12 6 1.1685 -6.0348 0.0144 13 1 2.1423 -6.5019 0.0117 14 6 0.0107 -6.8268 0.0249 15 7 -1.1675 -6.2617 0.0282 16 14 0.1532 -8.6893 0.0338 17 1 0.8955 -9.1232 1.2446 18 1 -1.2050 -9.2897 0.0437 19 1 0.8824 -9.1358 -1.1803 20 7 2.1046 -3.7379 0.0142 21 1 3.0535 -3.9388 0.0160 22 1 -0.3633 0.0040 1.0277 23 1 -0.3634 0.8879 -0.5173 24 1 -0.3632 -0.8921 -0.5103 25 1 1.6962 2.1336 -0.0004 26 1 4.1554 2.0766 -0.0106 27 1 4.1930 -2.0720 -0.0019 28 1 -1.9681 -6.8094 0.0351 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168220375.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:19 Heat of formation + Delta-G solvation = 73.120990 kcal Electronic energy + Delta-G solvation = -15005.085292 eV Core-core repulsion = 12441.884942 eV Total energy + Delta-G solvation = -2563.200350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.65832 -40.82981 -35.77167 -34.94083 -34.09007 -32.70851 -30.48585 -28.67209 -27.64787 -24.63987 -23.26824 -22.62317 -21.81407 -19.43546 -18.26650 -17.24262 -17.09511 -16.67056 -16.21567 -16.10872 -14.99385 -14.93924 -14.61243 -13.73197 -13.63268 -13.47686 -13.29012 -13.00450 -12.93479 -12.65542 -12.01613 -11.48545 -11.30981 -11.10725 -10.70235 -10.64232 -10.31012 -10.23235 -9.21236 -8.57792 -6.64577 -0.11721 0.29992 1.34267 1.42929 1.58018 1.77786 2.17026 2.45318 2.51757 2.99158 3.32061 3.46623 3.75626 3.86541 3.97287 4.16936 4.56816 4.69155 4.77713 4.85872 4.92287 4.94789 5.18166 5.23000 5.38414 5.49241 5.65722 5.79779 6.20172 6.24523 6.71775 6.99257 7.09481 8.37345 8.64273 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.056683 B = 0.006275 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.855350 B = 4461.063153 C = 4939.769734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.037 4.037 3 C -0.157 4.157 4 C 0.086 3.914 5 N -0.498 5.498 6 C 0.092 3.908 7 C -0.053 4.053 8 C 0.108 3.892 9 N -0.296 5.296 10 N -0.387 5.387 11 C 0.319 3.681 12 C -0.472 4.472 13 H 0.105 0.895 14 C 0.030 3.970 15 N -0.779 5.779 16 Si 1.007 2.993 17 H -0.255 1.255 18 H -0.271 1.271 19 H -0.255 1.255 20 N -0.630 5.630 21 H 0.421 0.579 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.173 0.827 26 H 0.194 0.806 27 H 0.156 0.844 28 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 7.582 -0.108 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.047 4.047 3 C -0.176 4.176 4 C -0.071 4.071 5 N -0.207 5.207 6 C -0.068 4.068 7 C -0.058 4.058 8 C -0.154 4.154 9 N -0.140 5.140 10 N -0.236 5.236 11 C 0.075 3.925 12 C -0.511 4.511 13 H 0.123 0.877 14 C -0.192 4.192 15 N -0.403 5.403 16 Si 0.826 3.174 17 H -0.179 1.179 18 H -0.195 1.195 19 H -0.178 1.178 20 N -0.252 5.252 21 H 0.260 0.740 22 H 0.086 0.914 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.190 0.810 26 H 0.211 0.789 27 H 0.173 0.827 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.822 7.934 -0.102 9.842 hybrid contribution 0.669 -1.337 0.052 1.496 sum 6.491 6.597 -0.050 9.256 Atomic orbital electron populations 1.21051 0.89584 1.04360 1.02884 1.20658 0.97738 0.91788 0.94532 1.22297 0.95471 0.98542 1.01285 1.23406 0.92153 0.96671 0.94895 1.67622 1.41163 0.98649 1.13296 1.22763 0.89684 0.97035 0.97312 1.18734 0.94082 0.89122 1.03890 1.22263 0.90969 0.86048 1.16112 1.74206 1.10845 1.13156 1.15779 1.75555 1.21520 0.95322 1.31177 1.21892 0.82266 0.93272 0.95044 1.18738 0.96258 0.86611 1.49524 0.87659 1.26996 0.93486 1.06905 0.91792 1.70059 0.99580 1.40225 1.30453 0.84889 0.78736 0.73463 0.80314 1.17867 1.19521 1.17847 1.43946 1.09755 1.05303 1.66153 0.73954 0.91370 0.89291 0.90436 0.80957 0.78932 0.82679 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 9.28 71.24 0.66 -3.41 15 2 C -0.04 -1.24 5.96 -19.36 -0.12 -1.35 15 3 C -0.16 -3.80 9.80 22.32 0.22 -3.58 15 4 C 0.09 2.04 11.17 84.70 0.95 2.98 15 5 N -0.50 -14.94 10.34 -194.46 -2.01 -16.95 15 6 C 0.09 3.04 10.89 85.12 0.93 3.97 15 7 C -0.05 -2.04 5.89 -19.98 -0.12 -2.16 15 8 C 0.11 5.12 7.77 135.95 1.06 6.18 15 9 N -0.30 -16.13 8.91 -50.90 -0.45 -16.58 15 10 N -0.39 -23.34 10.49 -55.18 -0.58 -23.92 15 11 C 0.32 17.61 7.71 133.30 1.03 18.64 15 12 C -0.47 -24.50 9.45 23.13 0.22 -24.28 15 13 H 0.11 4.81 7.85 -2.91 -0.02 4.79 15 14 C 0.03 1.51 5.50 85.36 0.47 1.98 15 15 N -0.78 -42.78 11.93 21.89 0.26 -42.52 15 16 Si 1.01 36.60 29.56 68.60 2.03 38.63 15 17 H -0.25 -8.78 7.11 99.48 0.71 -8.08 15 18 H -0.27 -9.51 7.11 99.48 0.71 -8.81 15 19 H -0.25 -8.77 7.11 99.48 0.71 -8.06 15 20 N -0.63 -29.23 6.23 -184.87 -1.15 -30.38 15 21 H 0.42 15.88 8.21 -92.71 -0.76 15.12 15 22 H 0.07 2.28 8.14 -2.39 -0.02 2.26 15 23 H 0.09 2.27 8.10 -2.39 -0.02 2.25 15 24 H 0.08 3.26 5.33 -2.39 -0.01 3.25 15 25 H 0.17 2.77 8.06 -2.91 -0.02 2.75 15 26 H 0.19 2.88 8.06 -2.91 -0.02 2.85 15 27 H 0.16 4.63 7.28 -2.91 -0.02 4.61 15 28 H 0.29 14.22 8.29 -92.70 -0.77 13.46 15 Total: -1.00 -70.20 251.54 3.83 -66.37 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.45 Total: 26.40 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.29 Total: -1.03 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -3.93 Total: -130.36 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -70.20 3.83 -66.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168220375.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.488 kcal (2) G-P(sol) polarization free energy of solvation -70.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds