Wall clock time and date at job start Mon Mar 30 2020 03:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31237 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47083 * 270.00104 * 3 2 1 5 5 H 1.48497 * 109.46978 * 30.00270 * 3 2 1 6 6 H 1.48497 * 109.46805 * 150.00027 * 3 2 1 7 7 C 1.39013 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99946 * 179.97438 * 7 2 1 9 9 N 1.37614 * 120.00537 * 359.97438 * 7 2 1 10 10 N 1.40620 * 127.42160 * 0.03993 * 9 7 2 11 11 N 1.28932 * 106.66828 * 179.97438 * 10 9 7 12 12 N 1.28401 * 110.32232 * 359.76306 * 11 10 9 13 13 C 1.30732 * 110.67555 * 0.39895 * 12 11 10 14 14 C 1.50709 * 126.40706 * 179.87382 * 13 12 11 15 15 C 1.50693 * 109.47444 * 269.69112 * 14 13 12 16 16 C 1.38233 * 120.00207 * 89.99457 * 15 14 13 17 17 C 1.38234 * 120.00037 * 179.72405 * 16 15 14 18 18 C 1.38234 * 120.00240 * 0.26327 * 17 16 15 19 19 C 1.38238 * 119.99693 * 359.97438 * 18 17 16 20 20 C 1.38234 * 120.00067 * 0.02562 * 19 18 17 21 21 H 0.96997 * 120.00047 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46880 * 149.69094 * 14 13 12 23 23 H 1.09001 * 109.46663 * 29.68978 * 14 13 12 24 24 H 1.08002 * 120.00157 * 0.02562 * 16 15 14 25 25 H 1.07999 * 120.00009 * 180.28389 * 17 16 15 26 26 H 1.07997 * 120.00460 * 180.02562 * 18 17 16 27 27 H 1.08001 * 119.99624 * 180.02562 * 19 18 17 28 28 H 1.07999 * 120.00008 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2463 1.6178 0.0000 4 1 2.4938 2.0465 -1.4001 5 1 1.4438 2.6526 0.7001 6 1 3.5439 1.4402 0.7000 7 6 2.0074 -1.2039 -0.0005 8 1 3.0874 -1.2039 -0.0010 9 7 1.3194 -2.3957 -0.0005 10 7 -0.0750 -2.5775 -0.0008 11 7 -0.2821 -3.8500 -0.0013 12 7 0.8348 -4.4836 -0.0063 13 6 1.8398 -3.6475 -0.0009 14 6 3.3031 -4.0079 -0.0014 15 6 3.7915 -4.1281 1.4191 16 6 3.7291 -5.3457 2.0707 17 6 4.1824 -5.4573 3.3718 18 6 4.6929 -4.3501 4.0233 19 6 4.7508 -3.1314 3.3733 20 6 4.2975 -3.0198 2.0722 21 1 -0.4850 0.8400 0.0004 22 1 3.8685 -3.2305 -0.5154 23 1 3.4428 -4.9589 -0.5154 24 1 3.3308 -6.2109 1.5616 25 1 4.1379 -6.4096 3.8793 26 1 5.0474 -4.4374 5.0397 27 1 5.1501 -2.2665 3.8822 28 1 4.3431 -2.0678 1.5643 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213280335.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:10 Heat of formation + Delta-G solvation = 122.846708 kcal Electronic energy + Delta-G solvation = -15290.115334 eV Core-core repulsion = 12729.071252 eV Total energy + Delta-G solvation = -2561.044081 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.02033 -38.81517 -34.64454 -33.32910 -31.55110 -30.54571 -29.88550 -26.83316 -25.76321 -22.33661 -21.95845 -21.38669 -19.77257 -18.08822 -16.53259 -15.70093 -15.05015 -14.77318 -14.53912 -14.40773 -13.78004 -13.11558 -12.74422 -12.43510 -12.25847 -12.12332 -11.59662 -11.48780 -11.05390 -10.84847 -10.62792 -10.58794 -10.40369 -10.17159 -9.05039 -8.92286 -8.57662 -8.45078 -8.23575 -6.98404 -4.83442 1.66798 1.74863 2.68882 2.86276 2.93411 3.13049 3.55077 3.96985 4.11024 4.36395 4.63802 5.16661 5.20913 5.31190 5.47582 5.53033 5.76400 5.83886 5.97817 6.16018 6.30934 6.34350 6.51685 6.74266 6.78588 6.81830 6.99102 7.18596 7.34622 7.51536 7.71963 8.33248 8.84240 9.99229 10.49277 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.023449 B = 0.010127 C = 0.007715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.818850 B = 2764.343970 C = 3628.512975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.048 3.952 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.305 4.305 8 H 0.126 0.874 9 N -0.153 5.153 10 N -0.113 5.113 11 N -0.148 5.148 12 N -0.349 5.349 13 C 0.074 3.926 14 C 0.026 3.974 15 C -0.069 4.069 16 C -0.104 4.104 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.124 4.124 20 C -0.106 4.106 21 H 0.286 0.714 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.123 0.877 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.450 -1.032 3.863 12.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.174 4.174 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.444 4.444 8 H 0.144 0.856 9 N 0.066 4.934 10 N -0.098 5.098 11 N -0.139 5.139 12 N -0.212 5.212 13 C -0.194 4.194 14 C -0.014 4.014 15 C -0.070 4.070 16 C -0.122 4.122 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.142 4.142 20 C -0.124 4.124 21 H 0.097 0.903 22 H 0.103 0.897 23 H 0.110 0.890 24 H 0.141 0.859 25 H 0.135 0.865 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.784 -1.337 3.850 10.598 hybrid contribution 1.097 1.353 0.103 1.745 sum 10.880 0.016 3.952 11.576 Atomic orbital electron populations 1.70115 1.06546 1.29567 1.31711 1.25820 0.95849 1.00998 0.94684 0.85694 0.79562 0.78852 0.79512 1.19002 1.19584 1.18194 1.20198 0.92286 0.80265 1.51622 0.85621 1.47522 1.05766 1.05677 1.34407 1.83009 0.89293 1.09096 1.28402 1.77588 1.18102 1.00055 1.18105 1.73702 0.94447 1.28882 1.24126 1.24171 0.96684 0.82599 1.15904 1.18600 0.86846 1.02859 0.93107 1.19844 0.97321 0.93563 0.96264 1.21080 0.98740 0.97596 0.94829 1.21067 0.99831 0.98468 0.95070 1.21056 1.00962 0.93297 0.99505 1.21077 1.00682 0.97404 0.95049 1.21172 0.97988 0.98291 0.94971 0.90313 0.89697 0.89008 0.85852 0.86497 0.86709 0.86449 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.70 11.93 55.50 0.66 -19.04 15 2 C 0.05 1.13 5.50 -17.52 -0.10 1.04 15 3 Si 0.94 17.14 29.55 -169.99 -5.02 12.11 15 4 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 6 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15 7 C -0.30 -7.42 10.05 -14.67 -0.15 -7.57 15 8 H 0.13 2.64 6.42 -52.49 -0.34 2.30 15 9 N -0.15 -4.12 3.77 -8.88 -0.03 -4.15 15 10 N -0.11 -3.36 11.90 60.35 0.72 -2.65 15 11 N -0.15 -4.31 13.38 60.35 0.81 -3.50 15 12 N -0.35 -9.34 12.15 32.84 0.40 -8.94 15 13 C 0.07 1.80 7.36 -154.74 -1.14 0.66 15 14 C 0.03 0.49 5.64 -29.03 -0.16 0.32 15 15 C -0.07 -1.20 5.12 -104.63 -0.54 -1.74 15 16 C -0.10 -1.70 9.70 -39.58 -0.38 -2.08 15 17 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 15 18 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 15 19 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 15 20 C -0.11 -1.77 9.70 -39.58 -0.38 -2.15 15 21 H 0.29 6.74 8.30 -40.82 -0.34 6.40 15 22 H 0.08 1.41 7.46 -51.93 -0.39 1.03 15 23 H 0.09 1.50 8.09 -51.93 -0.42 1.08 15 24 H 0.12 1.89 8.06 -52.49 -0.42 1.47 15 25 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 26 H 0.11 1.28 8.06 -52.49 -0.42 0.86 15 27 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 28 H 0.12 2.01 7.25 -52.49 -0.38 1.63 15 LS Contribution 256.96 15.07 3.87 3.87 Total: -1.00 -31.60 256.96 -4.99 -36.59 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -2.35 Total: 3.87 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -4.04 Total: -18.17 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 2.55 Total: -38.27 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.02 Total: 12.11 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.60 -4.99 -36.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213280335.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.439 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds