Wall clock time and date at job start Mon Mar 30 2020 03:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31237 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47083 * 270.00104 * 3 2 1 5 5 H 1.48497 * 109.46978 * 30.00270 * 3 2 1 6 6 H 1.48497 * 109.46805 * 150.00027 * 3 2 1 7 7 C 1.39013 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99946 * 179.97438 * 7 2 1 9 9 N 1.37614 * 120.00537 * 359.97438 * 7 2 1 10 10 N 1.40620 * 127.42160 * 0.03993 * 9 7 2 11 11 N 1.28932 * 106.66828 * 179.97438 * 10 9 7 12 12 N 1.28401 * 110.32232 * 359.76306 * 11 10 9 13 13 C 1.30732 * 110.67555 * 0.39895 * 12 11 10 14 14 C 1.50709 * 126.40706 * 179.87382 * 13 12 11 15 15 C 1.50693 * 109.47444 * 269.69112 * 14 13 12 16 16 C 1.38233 * 120.00207 * 89.99457 * 15 14 13 17 17 C 1.38234 * 120.00037 * 179.72405 * 16 15 14 18 18 C 1.38234 * 120.00240 * 0.26327 * 17 16 15 19 19 C 1.38238 * 119.99693 * 359.97438 * 18 17 16 20 20 C 1.38234 * 120.00067 * 0.02562 * 19 18 17 21 21 H 0.96997 * 120.00047 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46880 * 149.69094 * 14 13 12 23 23 H 1.09001 * 109.46663 * 29.68978 * 14 13 12 24 24 H 1.08002 * 120.00157 * 0.02562 * 16 15 14 25 25 H 1.07999 * 120.00009 * 180.28389 * 17 16 15 26 26 H 1.07997 * 120.00460 * 180.02562 * 18 17 16 27 27 H 1.08001 * 119.99624 * 180.02562 * 19 18 17 28 28 H 1.07999 * 120.00008 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2463 1.6178 0.0000 4 1 2.4938 2.0465 -1.4001 5 1 1.4438 2.6526 0.7001 6 1 3.5439 1.4402 0.7000 7 6 2.0074 -1.2039 -0.0005 8 1 3.0874 -1.2039 -0.0010 9 7 1.3194 -2.3957 -0.0005 10 7 -0.0750 -2.5775 -0.0008 11 7 -0.2821 -3.8500 -0.0013 12 7 0.8348 -4.4836 -0.0063 13 6 1.8398 -3.6475 -0.0009 14 6 3.3031 -4.0079 -0.0014 15 6 3.7915 -4.1281 1.4191 16 6 3.7291 -5.3457 2.0707 17 6 4.1824 -5.4573 3.3718 18 6 4.6929 -4.3501 4.0233 19 6 4.7508 -3.1314 3.3733 20 6 4.2975 -3.0198 2.0722 21 1 -0.4850 0.8400 0.0004 22 1 3.8685 -3.2305 -0.5154 23 1 3.4428 -4.9589 -0.5154 24 1 3.3308 -6.2109 1.5616 25 1 4.1379 -6.4096 3.8793 26 1 5.0474 -4.4374 5.0397 27 1 5.1501 -2.2665 3.8822 28 1 4.3431 -2.0678 1.5643 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213280335.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:10 Heat of formation + Delta-G solvation = 103.298577 kcal Electronic energy + Delta-G solvation = -15290.963004 eV Core-core repulsion = 12729.071252 eV Total energy + Delta-G solvation = -2561.891752 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.01574 -40.00650 -36.54837 -34.86467 -33.42943 -31.70546 -31.63455 -28.51920 -27.48699 -24.09446 -23.35661 -22.84950 -21.47125 -19.99676 -17.84129 -17.44435 -16.71822 -16.13551 -15.98356 -15.86806 -15.47540 -14.39478 -14.05533 -14.01301 -13.91218 -13.43121 -13.23760 -12.98813 -12.83660 -12.22724 -12.13304 -12.05936 -11.98737 -11.76432 -11.09938 -10.79680 -10.35281 -9.73931 -9.58373 -8.80584 -6.77903 0.45823 0.58271 0.90115 1.36898 1.57079 1.59825 1.96348 1.98360 2.46096 2.82899 2.96511 3.82759 3.97470 4.08235 4.21810 4.25054 4.35742 4.60164 4.67920 4.78268 4.85825 4.93378 5.13359 5.23889 5.31567 5.47812 5.63336 5.66918 5.80915 5.84191 6.19895 6.45675 6.93774 8.20183 8.43609 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.023449 B = 0.010127 C = 0.007715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.818850 B = 2764.343970 C = 3628.512975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.000 4.000 3 Si 1.025 2.975 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.316 4.316 8 H 0.160 0.840 9 N -0.163 5.163 10 N -0.163 5.163 11 N -0.181 5.181 12 N -0.362 5.362 13 C 0.072 3.928 14 C 0.031 3.969 15 C -0.091 4.091 16 C -0.122 4.122 17 C -0.130 4.130 18 C -0.127 4.127 19 C -0.129 4.129 20 C -0.123 4.123 21 H 0.293 0.707 22 H 0.102 0.898 23 H 0.107 0.893 24 H 0.123 0.877 25 H 0.143 0.857 26 H 0.147 0.853 27 H 0.143 0.857 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.285 0.151 4.983 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.217 4.217 3 Si 0.841 3.159 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.155 1.155 7 C -0.456 4.456 8 H 0.177 0.823 9 N 0.056 4.944 10 N -0.148 5.148 11 N -0.171 5.171 12 N -0.225 5.225 13 C -0.195 4.195 14 C -0.010 4.010 15 C -0.092 4.092 16 C -0.140 4.140 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.147 4.147 20 C -0.141 4.141 21 H 0.103 0.897 22 H 0.121 0.879 23 H 0.126 0.874 24 H 0.141 0.859 25 H 0.161 0.839 26 H 0.165 0.835 27 H 0.160 0.840 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.608 -0.215 4.968 13.553 hybrid contribution 0.280 0.991 -0.199 1.049 sum 12.888 0.777 4.769 13.764 Atomic orbital electron populations 1.70264 1.09016 1.31219 1.32285 1.27199 0.96516 1.05040 0.92927 0.84504 0.78749 0.72646 0.80000 1.18174 1.19723 1.15464 1.21185 0.93931 0.79969 1.50492 0.82342 1.47811 1.05192 1.07152 1.34196 1.82912 0.91425 1.09373 1.31119 1.77515 1.19256 1.00259 1.20033 1.73577 0.94740 1.29807 1.24326 1.25150 0.98542 0.81560 1.14288 1.18813 0.83216 1.04171 0.94768 1.19818 0.98962 0.94591 0.95821 1.21264 0.99370 0.97387 0.95945 1.21425 0.98901 1.00039 0.94389 1.21488 0.99595 0.92611 1.00821 1.21431 1.00030 0.98800 0.94424 1.21336 0.98689 0.98059 0.96048 0.89703 0.87935 0.87432 0.85855 0.83936 0.83481 0.83968 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.38 11.93 21.66 0.26 -42.12 15 2 C 0.00 -0.01 5.50 84.97 0.47 0.46 15 3 Si 1.02 33.15 29.55 68.60 2.03 35.17 15 4 H -0.26 -8.00 7.11 99.48 0.71 -7.30 15 5 H -0.27 -8.82 7.11 99.48 0.71 -8.12 15 6 H -0.23 -6.53 7.11 99.48 0.71 -5.83 15 7 C -0.32 -15.12 10.05 83.97 0.84 -14.28 15 8 H 0.16 6.26 6.42 -2.91 -0.02 6.24 15 9 N -0.16 -8.88 3.77 -182.00 -0.69 -9.56 15 10 N -0.16 -10.08 11.90 37.02 0.44 -9.64 15 11 N -0.18 -10.94 13.38 37.02 0.50 -10.44 15 12 N -0.36 -19.89 12.15 -50.00 -0.61 -20.50 15 13 C 0.07 3.52 7.36 137.90 1.01 4.54 15 14 C 0.03 1.10 5.64 29.10 0.16 1.27 15 15 C -0.09 -3.06 5.12 -19.87 -0.10 -3.17 15 16 C -0.12 -3.80 9.70 22.27 0.22 -3.59 15 17 C -0.13 -3.41 10.05 22.27 0.22 -3.19 15 18 C -0.13 -3.10 10.05 22.27 0.22 -2.88 15 19 C -0.13 -3.42 10.05 22.27 0.22 -3.19 15 20 C -0.12 -3.86 9.70 22.27 0.22 -3.64 15 21 H 0.29 13.95 8.30 -92.71 -0.77 13.18 15 22 H 0.10 3.24 7.46 -2.39 -0.02 3.23 15 23 H 0.11 3.44 8.09 -2.39 -0.02 3.43 15 24 H 0.12 3.73 8.06 -2.91 -0.02 3.70 15 25 H 0.14 2.92 8.06 -2.91 -0.02 2.90 15 26 H 0.15 2.60 8.06 -2.91 -0.02 2.57 15 27 H 0.14 2.97 8.06 -2.91 -0.02 2.95 15 28 H 0.13 3.77 7.25 -2.91 -0.02 3.75 15 Total: -1.00 -70.64 256.96 6.60 -64.04 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.18 Total: 20.71 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 3.49 Total: -27.66 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -0.10 Total: -92.26 kcal Atomic # 14 Polarization: 33.15 SS G_CDS: 2.03 Total: 35.17 kcal Total: -70.64 6.60 -64.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213280335.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.341 kcal (2) G-P(sol) polarization free energy of solvation -70.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds