Wall clock time and date at job start Mon Mar 30 2020 03:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.29009 * 126.55057 * 2 1 4 4 N 1.28647 * 109.15782 * 180.27102 * 3 2 1 5 5 N 1.28811 * 109.83125 * 359.75873 * 4 3 2 6 6 C 1.32217 * 107.86775 * 359.97438 * 5 4 3 7 7 C 1.47585 * 126.87797 * 179.97438 * 6 5 4 8 8 C 1.40082 * 119.88982 * 159.38981 * 7 6 5 9 9 C 1.36213 * 120.10550 * 180.02562 * 8 7 6 10 10 C 1.40964 * 119.88946 * 359.97172 * 9 8 7 11 11 C 1.40979 * 120.10106 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00181 * 340.59563 * 11 10 9 13 13 C 1.40062 * 119.99613 * 160.87582 * 11 10 9 14 14 N 1.30750 * 120.00525 * 323.90195 * 13 11 10 15 15 Si 1.86807 * 119.99797 * 143.90016 * 13 11 10 16 16 H 1.48506 * 109.46777 * 94.98598 * 15 13 11 17 17 H 1.48493 * 109.47376 * 214.98318 * 15 13 11 18 18 H 1.48495 * 109.47267 * 334.99066 * 15 13 11 19 19 C 1.40961 * 119.79289 * 0.27904 * 10 9 8 20 20 C 1.36211 * 119.88744 * 359.43565 * 19 10 9 21 21 H 1.09005 * 109.46836 * 265.22586 * 1 2 3 22 22 H 1.08995 * 109.46988 * 25.22043 * 1 2 3 23 23 H 1.08995 * 109.47443 * 145.22277 * 1 2 3 24 24 H 1.07994 * 119.94838 * 359.97438 * 8 7 6 25 25 H 1.07999 * 120.05372 * 179.97438 * 9 8 7 26 26 H 0.97004 * 120.00659 * 180.02562 * 14 13 11 27 27 H 1.07996 * 120.05518 * 179.70881 * 19 10 9 28 28 H 1.07992 * 119.94160 * 180.27295 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2332 1.0364 0.0000 4 7 3.4609 0.6518 -0.0057 5 7 3.5157 -0.6351 -0.0045 6 6 2.2757 -1.0940 0.0029 7 6 1.8548 -2.5085 0.0064 8 6 0.5686 -2.8530 0.4415 9 6 0.1757 -4.1573 0.4471 10 6 1.0656 -5.1608 0.0135 11 6 0.6635 -6.5120 0.0169 12 1 -0.1737 -6.8248 0.6233 13 6 1.3533 -7.4499 -0.7617 14 7 1.8252 -7.1077 -1.9321 15 14 1.5993 -9.1899 -0.1279 16 1 0.5246 -10.0666 -0.6589 17 1 2.9201 -9.6984 -0.5774 18 1 1.5485 -9.1880 1.3561 19 6 2.3607 -4.8097 -0.4184 20 6 2.7424 -3.5022 -0.4258 21 1 -0.3633 -0.0855 1.0242 22 1 -0.3633 0.9297 -0.4379 23 1 -0.3634 -0.8440 -0.5861 24 1 -0.1123 -2.0835 0.7738 25 1 -0.8160 -4.4220 0.7831 26 1 2.3027 -7.7573 -2.4715 27 1 3.0475 -5.5756 -0.7470 28 1 3.7329 -3.2317 -0.7607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214968864.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:20 Heat of formation + Delta-G solvation = 126.145408 kcal Electronic energy + Delta-G solvation = -14985.734371 eV Core-core repulsion = 12424.833332 eV Total energy + Delta-G solvation = -2560.901039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.19493 -37.85736 -35.08040 -34.28339 -32.18012 -29.97108 -29.59902 -28.04328 -25.86592 -22.90319 -22.40311 -20.97885 -20.43498 -17.78789 -16.87023 -16.51207 -15.76000 -15.40742 -14.42076 -13.85405 -13.42116 -13.28414 -12.86366 -12.55842 -12.30679 -11.90690 -11.69266 -11.47270 -11.42044 -11.17171 -10.84635 -10.48219 -10.27272 -10.11125 -9.78887 -9.61239 -9.24223 -7.89728 -7.73003 -7.33463 -4.70077 1.59536 2.44519 2.61984 2.76341 2.84723 2.87583 2.93398 3.29961 3.59484 4.16089 4.72454 4.98347 5.11067 5.30585 5.38093 5.51312 5.83231 6.12582 6.17795 6.39764 6.58592 6.65499 6.81409 6.90496 6.92756 7.24961 7.49357 7.64798 7.76345 7.83862 8.19065 8.42080 8.56777 9.34269 9.55509 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.056254 B = 0.006132 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.621364 B = 4565.225530 C = 4883.483095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.339 5.339 3 N -0.132 5.132 4 N -0.087 5.087 5 N -0.337 5.337 6 C 0.289 3.711 7 C -0.212 4.212 8 C -0.054 4.054 9 C -0.232 4.232 10 C 0.125 3.875 11 C -0.433 4.433 12 H 0.092 0.908 13 C 0.086 3.914 14 N -0.735 5.735 15 Si 0.903 3.097 16 H -0.265 1.265 17 H -0.269 1.269 18 H -0.253 1.253 19 C -0.193 4.193 20 C -0.029 4.029 21 H 0.088 0.912 22 H 0.096 0.904 23 H 0.106 0.894 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.293 0.707 27 H 0.110 0.890 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 1.111 1.546 5.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.140 5.140 3 N -0.118 5.118 4 N -0.082 5.082 5 N -0.189 5.189 6 C 0.020 3.980 7 C -0.219 4.219 8 C -0.074 4.074 9 C -0.252 4.252 10 C 0.121 3.879 11 C -0.459 4.459 12 H 0.110 0.890 13 C -0.142 4.142 14 N -0.354 5.354 15 Si 0.725 3.275 16 H -0.190 1.190 17 H -0.194 1.194 18 H -0.176 1.176 19 C -0.213 4.213 20 C -0.049 4.049 21 H 0.106 0.894 22 H 0.114 0.886 23 H 0.124 0.876 24 H 0.113 0.887 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.128 0.872 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.726 2.192 1.293 4.512 hybrid contribution -0.735 -1.314 0.126 1.511 sum -4.460 0.878 1.420 4.762 Atomic orbital electron populations 1.22336 0.72833 1.05761 1.04580 1.48400 1.09757 1.04334 1.51474 1.78542 0.98055 1.13159 1.21996 1.78258 1.09927 1.05253 1.14712 1.75372 1.17539 1.02166 1.23787 1.24549 0.85270 0.91670 0.96474 1.16688 0.97784 0.84305 1.23119 1.20432 0.93400 0.96279 0.97310 1.20524 0.99361 0.92058 1.13268 1.17701 0.90781 0.92458 0.86975 1.19827 1.12948 0.92274 1.20854 0.89041 1.26181 0.92550 1.02430 0.93049 1.69876 1.20992 1.38154 1.06422 0.86367 0.79147 0.80427 0.81566 1.18979 1.19355 1.17580 1.20719 0.96870 0.94557 1.09110 1.20333 0.96883 0.92358 0.95359 0.89406 0.88554 0.87556 0.88723 0.88136 0.89543 0.87215 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 9.63 59.84 0.58 1.65 15 2 N -0.34 -6.18 3.79 -65.43 -0.25 -6.43 15 3 N -0.13 -2.63 13.27 60.35 0.80 -1.83 15 4 N -0.09 -1.92 13.40 60.35 0.81 -1.12 15 5 N -0.34 -7.71 12.24 32.42 0.40 -7.31 15 6 C 0.29 6.11 7.75 -154.41 -1.20 4.91 15 7 C -0.21 -4.57 5.88 -104.71 -0.62 -5.18 15 8 C -0.05 -1.06 8.56 -39.62 -0.34 -1.40 15 9 C -0.23 -4.92 9.73 -39.28 -0.38 -5.30 15 10 C 0.12 2.92 5.60 -106.80 -0.60 2.33 15 11 C -0.43 -9.91 8.92 -37.86 -0.34 -10.25 15 12 H 0.09 1.97 8.04 -52.49 -0.42 1.55 15 13 C 0.09 1.84 4.69 -17.33 -0.08 1.76 15 14 N -0.73 -16.47 11.87 55.55 0.66 -15.81 15 15 Si 0.90 15.90 29.68 -169.99 -5.04 10.85 15 16 H -0.26 -4.57 7.11 56.52 0.40 -4.16 15 17 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15 18 H -0.25 -4.49 7.11 56.52 0.40 -4.09 15 19 C -0.19 -4.56 8.77 -39.28 -0.34 -4.90 15 20 C -0.03 -0.66 9.64 -39.62 -0.38 -1.04 15 21 H 0.09 0.90 7.72 -51.93 -0.40 0.50 15 22 H 0.10 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.11 1.26 6.55 -51.93 -0.34 0.92 15 24 H 0.09 1.50 5.09 -52.49 -0.27 1.24 15 25 H 0.10 1.93 8.06 -52.49 -0.42 1.51 15 26 H 0.29 5.84 8.29 -40.82 -0.34 5.50 15 27 H 0.11 2.62 6.47 -52.49 -0.34 2.28 15 28 H 0.10 2.25 7.99 -52.49 -0.42 1.83 15 LS Contribution 251.11 15.07 3.78 3.78 Total: -1.00 -27.26 251.11 -4.71 -31.97 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -2.17 Total: 3.31 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -3.70 Total: -17.42 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 2.42 Total: -32.49 kcal Atomic # 14 Polarization: 15.90 SS G_CDS: -5.04 Total: 10.85 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.26 -4.71 -31.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214968864.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.114 kcal (2) G-P(sol) polarization free energy of solvation -27.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds